Rw5G023130

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000252
Physical Location & Seq
Forward (+)
32637025 .. 32637697
673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G023130.1

Sequence Viewer

Length: 528 bp
ATGGGATTTGGTCAAAAAGCGTGGCGTAATATACGGAAAGATCTGTTGCAAGAACTACAAAGCATGCCTTCCTTATATAAAGATCTTATATACGGGCCTAGACGATATTCTGAGCTTGAGCATGCACTTAATTTTAATATGAATGGTTATGCAAAGAAAGAGTATTGGATGAGCATGCCAGATATGGGGTATCTAATTGCCACATATTATAAAGTGGTGGTGATCCATTTATCTAATGTACAATGTCATGACGTTGAGTTACCTGAGATTGCCATTGACTTTGTCAAGATAGGGAATAAAGGGAATTTTGTACAGGTAAATTTGTCATCAGGGTTGATTCCTATACCACCAATTTCAAGTGAGTGGCACATGCACAATGATGAAACTACACAACACTTGTACCTTAGATACCAAGCTCGTGAAGAGCAATTCAAACAAGTATTTTGGAGTGCGGATACTGTTTGTGCAACAAAAACAGAAAGAGAAATTATGGATCTTGACCGTGATTCATTACATGAAAAGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

175

Amino Acids

20.58

Weight (kDa)

5.96

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AciI CCGC 1 cut(s) 452
AclWI GGATC 2 cut(s) 217, 501
AcsI RAATTY 2 cut(s) 304, 319
AfaI GTAC 3 cut(s) 240, 312, 401
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 2 cut(s) 357, 433
AluBI AGCT 2 cut(s) 115, 416
AluI AGCT 2 cut(s) 115, 416
AlwI GGATC 2 cut(s) 217, 501
AoxI GGCC 1 cut(s) 95
ApoI RAATTY 2 cut(s) 304, 319
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 232
BaeI ACNNNNGTAYC 2 cut(s) 383, 416
BauI CACGAG 1 cut(s) 417
BciVI GTATCC 1 cut(s) 448
BfaI CTAG 2 cut(s) 99, 526
BfuI GTATCC 1 cut(s) 448
BglII AGATCT 2 cut(s) 40, 82
BmgT120I GGNCC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMII CTCAG 2 cut(s) 102, 255
BshFI GGCC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 185
BsnI GGCC 1 cut(s) 97
Bsp1407I TGTACA 2 cut(s) 238, 310
Bsp143I GATC 4 cut(s) 40, 82, 222, 493
BspACI CCGC 1 cut(s) 452
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 103, 256
BspHI TCATGA 1 cut(s) 247
BspPI GGATC 2 cut(s) 217, 501
BspQI GCTCTTC 1 cut(s) 417
BsrGI TGTACA 2 cut(s) 238, 310
BssMI GATC 4 cut(s) 40, 82, 222, 493
BssSI CACGAG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 417
Bst4CI ACNGT 2 cut(s) 460, 503
Bst6I CTCTTC 1 cut(s) 417
BstAUI TGTACA 2 cut(s) 238, 310
BstC8I GCNNGC 3 cut(s) 65, 123, 176
BstDEI CTNAG 3 cut(s) 111, 264, 404
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 4 cut(s) 43, 85, 225, 496
BstMBI GATC 4 cut(s) 40, 82, 222, 493
BstNSI RCATGY 4 cut(s) 67, 125, 178, 373
BstX2I RGATCY 3 cut(s) 40, 82, 493
BstYI RGATCY 3 cut(s) 40, 82, 493
BsuI GTATCC 1 cut(s) 448
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 174
Cac8I GCNNGC 3 cut(s) 65, 123, 176
CciI TCATGA 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 3 cut(s) 239, 311, 400
CspCI CAANNNNNGTGG 1 cut(s) 37
CviAII CATG 6 cut(s) 64, 122, 175, 248, 370, 515
CviJI RGCY 3 cut(s) 97, 115, 416
CviKI_1 RGCY 3 cut(s) 97, 115, 416
CviQI GTAC 3 cut(s) 239, 311, 400
DdeI CTNAG 3 cut(s) 111, 264, 404
DpnI GATC 4 cut(s) 42, 84, 224, 495
DpnII GATC 4 cut(s) 40, 82, 222, 493
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
FaeI CATG 6 cut(s) 67, 125, 178, 251, 373, 518
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FatI CATG 6 cut(s) 63, 121, 174, 247, 369, 514
FokI GGATG 1 cut(s) 181
FspBI CTAG 2 cut(s) 99, 526
HaeIII GGCC 1 cut(s) 97
Hin1II CATG 6 cut(s) 67, 125, 178, 251, 373, 518
HinfI GANTC 2 cut(s) 337, 506
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 4 cut(s) 248, 286, 419, 497
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 2 cut(s) 460, 503
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 5 cut(s) 49, 125, 152, 373, 467
HpyF3I CTNAG 3 cut(s) 111, 264, 404
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 6 cut(s) 67, 125, 178, 251, 373, 518
Kzo9I GATC 4 cut(s) 40, 82, 222, 493
LguI GCTCTTC 1 cut(s) 417
LpnPI CCDG 4 cut(s) 192, 276, 299, 315
MaeI CTAG 2 cut(s) 99, 526
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 258
MalI GATC 4 cut(s) 42, 84, 224, 495
MboI GATC 4 cut(s) 40, 82, 222, 493
MboII GAAGA 1 cut(s) 434
MflI RGATCY 3 cut(s) 40, 82, 493
MluCI AATT 7 cut(s) 130, 195, 304, 319, 351, 428, 486
MseI TTAA 2 cut(s) 129, 135
MslI CAYNNNNRTG 1 cut(s) 378
NdeII GATC 4 cut(s) 40, 82, 222, 493
NlaIII CATG 6 cut(s) 67, 125, 178, 251, 373, 518
NspI RCATGY 4 cut(s) 67, 125, 178, 373
PaeI GCATGC 3 cut(s) 67, 125, 178
PagI TCATGA 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 337, 506
PflFI GACNNNGTC 1 cut(s) 281
PsiI TTATAA 1 cut(s) 210
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 3 cut(s) 40, 82, 493
PsyI GACNNNGTC 1 cut(s) 281
RsaI GTAC 3 cut(s) 240, 312, 401
RsaNI GTAC 3 cut(s) 239, 311, 400
RseI CAYNNNNRTG 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 2 cut(s) 129, 135
Sau3AI GATC 4 cut(s) 40, 82, 222, 493
Sau96I GGNCC 1 cut(s) 95
SetI ASST 6 cut(s) 117, 255, 265, 318, 405, 418
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SphI GCATGC 3 cut(s) 67, 125, 178
Sse9I AATT 7 cut(s) 130, 195, 304, 319, 351, 428, 486
SsiI CCGC 1 cut(s) 452
SspMI CTAG 2 cut(s) 99, 526
TaaI ACNGT 2 cut(s) 460, 503
TaiI ACGT 1 cut(s) 255
TasI AATT 7 cut(s) 130, 195, 304, 319, 351, 428, 486
TatI WGTACW 2 cut(s) 238, 310
TfiI GAWTC 2 cut(s) 337, 506
Tru1I TTAA 2 cut(s) 129, 135
Tru9I TTAA 2 cut(s) 129, 135
TspDTI ATGAA 3 cut(s) 155, 396, 498
TspGWI ACGGA 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 281
XapI RAATTY 2 cut(s) 304, 319
XceI RCATGY 4 cut(s) 67, 125, 178, 373
XspI CTAG 2 cut(s) 99, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.