Rmu_sc0001719.1_g000011

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001719.1
OG0000252
Physical Location & Seq
Forward (+)
47454 .. 48350
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001719.1_g000011.1.cds

Sequence Viewer

Length: 780 bp
atgagaaattttcttgataaggtaaggcgtctacgaccagaggagggagatgctgctgctattcaaaagtattttctgaaaatgcaagctgacaactccaatttcttttatataatggatataaatgagtgtcgactaaggaatgtgttttgggcagatgcaagaagtagagccgcttacgaggaatgtggtgatgttgtgacatttgacactacatacttaacaaataagaatgacatgccatttgcaccttttgtaggtgtcaatcatcatgggcaatcaatattactaggatgtggattgatttctaatgacgatacagatacgtttacatggtggtgcttgtggcatataatgaagaaggttccggagaaattgaaaggctacaaagagaaatacgagcctatcgagttttctattcaaaatattgtttacgattcactaaattgtgatgaatttgaagatcgttggaaggtgttcattgaacagtataaccttcagaacaatgaatggttattgggattatatgaggagaggctaagatgggtacctagttttgtgaaagacactttctggacaggcatgtctataactcaacgtagcgagagcatgaatgcattctttgatgggtatgtaaactcaaagactacattgaagcagtttgtggagcaatatgagaatgttttacgagataaagttgagaaagagaatcttgcagattttcagtctttcaattcaaagattatgtgtttcacaatgtataatattgagaaacaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

259

Amino Acids

30.92

Weight (kDa)

5.1

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 583
Acc65I GGTACC 1 cut(s) 547
AccB1I GGYRCC 1 cut(s) 547
AccI GTMKAC 2 cut(s) 31, 133
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 1 cut(s) 174
AcsI RAATTY 2 cut(s) 7, 455
AcuI CTGAAG 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 28
AfaI GTAC 1 cut(s) 549
AfiI CCNNNNNNNGG 2 cut(s) 44, 257
AgsI TTSAA 8 cut(s) 65, 379, 422, 461, 485, 655, 733, 738
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Aor13HI TCCGGA 1 cut(s) 367
ApeKI GCWGC 2 cut(s) 53, 56
ApoI RAATTY 2 cut(s) 7, 455
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
Asp700I GAANNNNTTC 2 cut(s) 476, 617
Asp718I GGTACC 1 cut(s) 547
AsuHPI GGTGA 1 cut(s) 203
BanI GGYRCC 1 cut(s) 547
BbvI GCAGC 2 cut(s) 40, 43
BccI CCATC 2 cut(s) 537, 620
BfaI CTAG 2 cut(s) 290, 552
BisI GCNGC 3 cut(s) 54, 57, 174
BlsI GCNGC 3 cut(s) 55, 58, 175
BmiI GGNNCC 2 cut(s) 366, 549
BmsI GCATC 2 cut(s) 40, 148
BsaHI GRCGYC 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 257
BseAI TCCGGA 1 cut(s) 367
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 2 cut(s) 44, 257
BseRI GAGGAG 2 cut(s) 56, 545
BseXI GCAGC 2 cut(s) 40, 43
BshNI GGYRCC 1 cut(s) 547
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 2 cut(s) 44, 257
BsmI GAATGC 2 cut(s) 617, 619
Bsp13I TCCGGA 1 cut(s) 367
Bsp143I GATC 1 cut(s) 463
BspACI CCGC 1 cut(s) 174
BspEI TCCGGA 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 366, 549
BspT107I GGYRCC 1 cut(s) 547
BssMI GATC 1 cut(s) 463
BssNI GRCGYC 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 489
BstACI GRCGYC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 137, 539
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 299
BstKTI GATC 1 cut(s) 466
BstMBI GATC 1 cut(s) 463
BstNSI RCATGY 2 cut(s) 241, 586
BstV1I GCAGC 2 cut(s) 40, 43
BtsCI GGATG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 87
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 548
CviAII CATG 5 cut(s) 238, 272, 333, 583, 610
CviJI RGCY 5 cut(s) 89, 173, 384, 403, 538
CviKI_1 RGCY 5 cut(s) 89, 173, 384, 403, 538
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 2 cut(s) 137, 539
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
DrdI GACNNNNNNGTC 1 cut(s) 583
DseDI GACNNNNNNGTC 1 cut(s) 583
Eco57I CTGAAG 1 cut(s) 482
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 619
FaeI CATG 5 cut(s) 241, 275, 336, 586, 613
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FatI CATG 5 cut(s) 237, 271, 332, 582, 609
FblI GTMKAC 2 cut(s) 31, 133
Fnu4HI GCNGC 3 cut(s) 54, 57, 174
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 3 cut(s) 54, 57, 174
FspBI CTAG 2 cut(s) 290, 552
GluI GCNGC 3 cut(s) 54, 57, 174
HapII CCGG 1 cut(s) 368
HgaI GACGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 5 cut(s) 241, 275, 336, 586, 613
HincII GTYRAC 1 cut(s) 134
HindII GTYRAC 1 cut(s) 134
HinfI GANTC 2 cut(s) 437, 709
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 5 cut(s) 32, 134, 330, 433, 637
Hpy188I TCNGA 2 cut(s) 78, 501
Hpy188III TCNNGA 3 cut(s) 14, 368, 574
Hpy8I GTNNAC 5 cut(s) 32, 134, 330, 433, 637
HpyAV CCTTC 3 cut(s) 355, 466, 506
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4IV ACGT 2 cut(s) 326, 598
HpyCH4V TGCA 5 cut(s) 85, 161, 248, 617, 716
HpyF3I CTNAG 2 cut(s) 137, 539
HpySE526I ACGT 2 cut(s) 326, 598
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 5 cut(s) 241, 275, 336, 586, 613
Kpn2I TCCGGA 1 cut(s) 367
KpnI GGTACC 1 cut(s) 551
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 1 cut(s) 667
LpnPI CCDG 4 cut(s) 51, 381, 559, 564
Lsp1109I GCAGC 2 cut(s) 40, 43
LweI GCATC 2 cut(s) 40, 148
MaeI CTAG 2 cut(s) 290, 552
MaeII ACGT 2 cut(s) 326, 598
MaeIII GTNAC 1 cut(s) 199
MalI GATC 1 cut(s) 465
MboI GATC 1 cut(s) 463
MboII GAAGA 2 cut(s) 370, 473
MluCI AATT 6 cut(s) 7, 100, 374, 445, 455, 733
MmeI TCCRAC 1 cut(s) 449
MnlI CCTC 5 cut(s) 34, 37, 175, 523, 528
Mph1103I ATGCAT 1 cut(s) 619
MroI TCCGGA 1 cut(s) 367
MroXI GAANNNNTTC 2 cut(s) 476, 617
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 337
MspI CCGG 1 cut(s) 368
Mva1269I GAATGC 2 cut(s) 617, 619
NdeII GATC 1 cut(s) 463
NlaIII CATG 5 cut(s) 241, 275, 336, 586, 613
NlaIV GGNNCC 2 cut(s) 366, 549
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 2 cut(s) 241, 586
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PctI GAATGC 2 cut(s) 617, 619
PdmI GAANNNNTTC 2 cut(s) 476, 617
PfeI GAWTC 2 cut(s) 437, 709
PkrI GCNGC 3 cut(s) 55, 58, 175
PspN4I GGNNCC 2 cut(s) 366, 549
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
RseI CAYNNNNRTG 1 cut(s) 337
SalI GTCGAC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 3 cut(s) 54, 57, 174
Sau3AI GATC 1 cut(s) 463
SfaNI GCATC 2 cut(s) 40, 148
SmiMI CAYNNNNRTG 1 cut(s) 337
Sse9I AATT 6 cut(s) 7, 100, 374, 445, 455, 733
SsiI CCGC 1 cut(s) 174
SspI AATATT 3 cut(s) 285, 427, 766
SspMI CTAG 2 cut(s) 290, 552
TaaI ACNGT 1 cut(s) 489
TaiI ACGT 2 cut(s) 329, 601
TaqI TCGA 2 cut(s) 133, 408
TasI AATT 6 cut(s) 7, 100, 374, 445, 455, 733
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 2 cut(s) 437, 709
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 2 cut(s) 53, 56
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 5 cut(s) 371, 468, 469, 522, 626
XagI CCTNNNNNAGG 1 cut(s) 255
XapI RAATTY 2 cut(s) 7, 455
XceI RCATGY 2 cut(s) 241, 586
XmiI GTMKAC 2 cut(s) 31, 133
XmnI GAANNNNTTC 2 cut(s) 476, 617
XspI CTAG 2 cut(s) 290, 552
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.