Rmu_ssc0000291.1_g000012

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000291.1
OG0000252
Physical Location & Seq
Forward (+)
60086 .. 61168
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000291.1_g000012.1.cds

Sequence Viewer

Length: 444 bp
atgcagaagaattttgatgacattaaggaattagcatacgattctgaagataagtgcatgattgttatgacttggttgcacaacctaaaagatgaactatccaaacatgattccaagaacactggtgcttgtagtggtgctgaaccaacgcctggctcacctatcaatagatctgggagtgacgttgatggtacttcaaatccaggtcaacatatacttactccattgtatttcaagaatccaaagttagttccatggaggctacggagggcatggtctaactgtttttctttcacccgtaggatccattttcgagtctctcatactttccgggagggaaacacggtagctgatgctcttgctaatcatggtgcgctcaatgtgggttatagctggtgggatgaccttccatcctttattgctggtcattatagatttcggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

147

Amino Acids

16.78

Weight (kDa)

8.48

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AclWI GGATC 2 cut(s) 298, 311
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 2 cut(s) 198, 235
AjnI CCWGG 2 cut(s) 151, 202
AluBI AGCT 2 cut(s) 350, 393
AluI AGCT 2 cut(s) 350, 393
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 2 cut(s) 298, 311
ApoI RAATTY 1 cut(s) 10
AspLEI GCGC 1 cut(s) 376
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 150, 286
BamHI GGATCC 1 cut(s) 303
BccI CCATC 2 cut(s) 182, 418
BciT130I CCWGG 2 cut(s) 153, 204
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 322
BglII AGATCT 1 cut(s) 170
Bme1390I CCNGG 3 cut(s) 153, 204, 332
BmiI GGNNCC 1 cut(s) 305
BmrFI CCNGG 3 cut(s) 153, 204, 332
BmsI GCATC 1 cut(s) 343
BpuMI CCSGG 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 127
BseBI CCWGG 2 cut(s) 153, 204
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 2 cut(s) 406, 410
BseLI CCNNNNNNNGG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 170, 303
Bsp19I CCATGG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 305
BspPI GGATC 2 cut(s) 298, 311
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 170, 303
BssT1I CCWWGG 1 cut(s) 254
Bst2UI CCWGG 2 cut(s) 153, 204
Bst4CI ACNGT 2 cut(s) 284, 346
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 406, 410
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 2 cut(s) 173, 306
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 2 cut(s) 170, 303
BstNI CCWGG 2 cut(s) 153, 204
BstSCI CCNGG 3 cut(s) 151, 202, 330
BstX2I RGATCY 2 cut(s) 170, 303
BstYI RGATCY 2 cut(s) 170, 303
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 2 cut(s) 406, 410
BtsIMutI CAGTG 1 cut(s) 120
CfoI GCGC 1 cut(s) 376
Csp6I GTAC 1 cut(s) 192
CviAII CATG 5 cut(s) 58, 107, 255, 273, 368
CviJI RGCY 4 cut(s) 156, 262, 350, 393
CviKI_1 RGCY 4 cut(s) 156, 262, 350, 393
CviQI GTAC 1 cut(s) 192
DpnI GATC 2 cut(s) 172, 305
DpnII GATC 2 cut(s) 170, 303
Eco130I CCWWGG 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 66
EcoRII CCWGG 2 cut(s) 151, 202
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 5 cut(s) 61, 110, 258, 276, 371
FatI CATG 5 cut(s) 57, 106, 254, 272, 367
FokI GGATG 2 cut(s) 397, 413
GlaI GCGC 1 cut(s) 375
HapII CCGG 1 cut(s) 331
HhaI GCGC 1 cut(s) 376
Hin1II CATG 5 cut(s) 61, 110, 258, 276, 371
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HincII GTYRAC 1 cut(s) 209
HindII GTYRAC 1 cut(s) 209
HinfI GANTC 4 cut(s) 41, 110, 238, 315
HpaII CCGG 1 cut(s) 331
HphI GGTGA 2 cut(s) 150, 286
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 2 cut(s) 284, 346
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 4, 57, 79
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 5 cut(s) 61, 110, 258, 276, 371
HspAI GCGC 1 cut(s) 374
Kzo9I GATC 2 cut(s) 170, 303
LpnPI CCDG 9 cut(s) 108, 138, 159, 165, 189, 216, 344, 379, 408
LweI GCATC 1 cut(s) 343
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 172, 305
MboI GATC 2 cut(s) 170, 303
MboII GAAGA 2 cut(s) 19, 59
MflI RGATCY 2 cut(s) 170, 303
MluCI AATT 2 cut(s) 10, 29
MlyI GAGTC 1 cut(s) 324
MnlI CCTC 3 cut(s) 252, 261, 328
MseI TTAA 1 cut(s) 24
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 3 cut(s) 153, 204, 332
MvaI CCWGG 2 cut(s) 153, 204
NciI CCSGG 1 cut(s) 332
NcoI CCATGG 1 cut(s) 254
NdeII GATC 2 cut(s) 170, 303
NlaIII CATG 5 cut(s) 61, 110, 258, 276, 371
NlaIV GGNNCC 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 41, 110, 238
PflMI CCANNNNNTGG 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 330
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 151, 202
PspGI CCWGG 2 cut(s) 151, 202
PspN4I GGNNCC 1 cut(s) 305
PsuI RGATCY 2 cut(s) 170, 303
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 2 cut(s) 170, 303
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 3 cut(s) 153, 204, 332
SetI ASST 7 cut(s) 87, 163, 186, 208, 352, 395, 408
SfaNI GCATC 1 cut(s) 343
Sse9I AATT 2 cut(s) 10, 29
StyD4I CCNGG 3 cut(s) 151, 202, 330
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 284, 346
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 313
TasI AATT 2 cut(s) 10, 29
TfiI GAWTC 3 cut(s) 41, 110, 238
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.