Rh6BG208100

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000252
Physical Location & Seq
Forward (+)
39178485 .. 39178895
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG208100.1

Sequence Viewer

Length: 411 bp
ATGGCCGGCGTTCCAGAGAAATACATTTTAAAACGATGGACAGCAAGTGTAAAAAGAAGTCATAGAAAAGTGAAAATAAGCTATGGCAATTGGACTGCCAAGCCTGAAGCACAGAGAAATGATAAGATGTGTAATTTGTTTTATGAGATAGCAGACTTAGCAGATGGCAAAGAAGAAGATTGTAACATGGTGATGGGGATATTAAATGATCTGAAAATGAAGCTGACTCAAAGTAAAGTTGATTGCGAAAGGAAAGGAGATAATATTGAGTTGGTTGAGAAGACAAAACTTGATGGAAAACTTTTCGAGAATGGTTGTGAAATACTTGATCCATTATCTGTTGGAAGTAAAGGTCGTCCTCAGGGTAAATTTGTTATCAAGGTTGATTCCTATACCACCAATTTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

136

Amino Acids

15.48

Weight (kDa)

8.99

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 406
AluBI AGCT 2 cut(s) 81, 223
AluI AGCT 2 cut(s) 81, 223
AlwI GGATC 1 cut(s) 323
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 202
AxyI CCTNAGG 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 287
BccI CCATC 4 cut(s) 30, 158, 187, 287
BpiI GAAGAC 1 cut(s) 287
Bse118I RCCGGY 1 cut(s) 5
Bse21I CCTNAGG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 374
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 6
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 208, 328
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 373
BspPI GGATC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssMI GATC 2 cut(s) 208, 328
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 157, 360
BstKTI GATC 2 cut(s) 211, 331
BstMBI GATC 2 cut(s) 208, 328
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 287
Bsu36I CCTNAGG 1 cut(s) 360
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 5
CviAII CATG 1 cut(s) 187
CviJI RGCY 4 cut(s) 5, 81, 103, 223
CviKI_1 RGCY 4 cut(s) 5, 81, 103, 223
DdeI CTNAG 2 cut(s) 157, 360
DpnI GATC 2 cut(s) 210, 330
DpnII GATC 2 cut(s) 208, 328
DraI TTTAAA 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 126
Eco81I CCTNAGG 1 cut(s) 360
FaeI CATG 1 cut(s) 190
FaiI YATR 5 cut(s) 63, 84, 144, 188, 393
FatI CATG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 6
Hin1II CATG 1 cut(s) 190
HinfI GANTC 2 cut(s) 226, 386
HpaII CCGG 1 cut(s) 6
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 2 cut(s) 14, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 157, 360
Hsp92II CATG 1 cut(s) 190
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 2 cut(s) 208, 328
LpnPI CCDG 4 cut(s) 19, 27, 117, 347
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 210, 330
MboI GATC 2 cut(s) 208, 328
MboII GAAGA 3 cut(s) 185, 188, 292
MfeI CAATTG 1 cut(s) 88
MluCI AATT 4 cut(s) 88, 133, 368, 400
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 1 cut(s) 369
MroNI GCCGGC 1 cut(s) 5
MseI TTAA 2 cut(s) 29, 203
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 1 cut(s) 6
MunI CAATTG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 158
NaeI GCCGGC 1 cut(s) 7
NdeII GATC 2 cut(s) 208, 328
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 190
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 386
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 2 cut(s) 29, 203
Sau3AI GATC 2 cut(s) 208, 328
SchI GAGTC 1 cut(s) 220
SetI ASST 4 cut(s) 83, 225, 355, 384
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 4 cut(s) 88, 133, 368, 400
SspI AATATT 1 cut(s) 265
TaqI TCGA 1 cut(s) 306
TasI AATT 4 cut(s) 88, 133, 368, 400
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 29, 203
Tru9I TTAA 2 cut(s) 29, 203
TspDTI ATGAA 1 cut(s) 233
XapI RAATTY 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.