Prupe.2G013600_v2.0.a1

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000252
Physical Location & Seq
Forward (+)
1197266 .. 1198442
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G013600.1

Sequence Viewer

Length: 1122 bp
ATGTCTTCGAGTAGCTTTACGAGTTCATATATTAATCAAGAAGAAGACGGGGTTCAAATGGAAAAGAATGATGGTGAAGCAGTAAGTGAGGAGCCTGAATTGGAGAATAGAGAGAATGTGGAAGAGCCTCGAGTTGGGATGACTTTTAACAACATTGATGATATAGTTGTCTATTATAGAGAATATGGGAAGCAATTAGGGTTTCCCGTGAGGAAGAGAACATCACAAAAGGGAGATGAGGGAGAATTGAAATATGTGACTATTTCATGTGGTCGAGAAGGCAAATATAAAAGTAAATCAAGTAATGTCCTAAAGCCACATCCAAGTATAAAAATTGGTTGCAAAGCTAGAGTAAGAGCAAGTATAATCTTAGATGGAAGGTGGCAGATCAACTCTATCAACCTTGATCATAACCATGATATGAGTCCAACCAAGGCTCGTTATTTTCGATGTCATCGGACAATAAGTTCATATATGAAAAGGAGGATTGAGTTAAATGATAGAGCTGGAATAAGGTTAAACAAGAGCTATAATTCATTAGTGGTTGAAGCTGGGGGCCATGAGAACATCTCCTTTTTGGAAAAGGATTGTAGAAATTATATTGAAAATGTGAGACGATTACGGCTTGGGGAAGGCGATGCTACTGCAATCCAAACTTATTTTCTGAATATGCAAGCTCAAAATTCAAATTTCTTCTATGCAATTGATTTAGATCAAGATGGTCGGTTAAGAAATGTATTTTGGGCAGATGCAAGAAGTAGGGCGGCATATAAGGAATTTGGAGATGTTGTTACATTTGATACAACCTACTTGACGAATAAGTATGACATGCCATTTGCTCCATTTGTGGGGGATATTGATGCTTTTATTTGGTTGTTTAAGTCTTGGCTCACATGTATGCATGAGCACGCTCCTAGGGGAATAATTACTGATCAAGATAAAGCCATGAAAAATGCCATTGAGATTATTTTTCCTAATACTAGACATCGTTGGTGCTTGTGGCACATAATGAACAAGTTTCCTAGTAAGTTGAACCGTTACAAGCAATATGAAGCTATCATGTATGCCTTGCAAAGTATTGTGTATGGCTCATTGGAGAAGGTTGAGTTTGAAGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

374

Amino Acids

43.41

Weight (kDa)

7.62

Isoelectric Point (pI)

58.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 764
AcsI RAATTY 3 cut(s) 682, 688, 776
AfiI CCNNNNNNNGG 2 cut(s) 134, 848
AflIII ACRYGT 1 cut(s) 893
AgsI TTSAA 7 cut(s) 56, 250, 548, 605, 687, 1033, 1112
AjuI GAANNNNNNNTTGG 4 cut(s) 645, 677, 724, 756
AloI GAACNNNNNNTCC 2 cut(s) 451, 483
AluBI AGCT 7 cut(s) 15, 347, 506, 528, 551, 677, 1055
AluI AGCT 7 cut(s) 15, 347, 506, 528, 551, 677, 1055
Alw21I GWGCWC 1 cut(s) 909
Alw26I GTCTC 1 cut(s) 607
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 1 cut(s) 556
ApoI RAATTY 3 cut(s) 682, 688, 776
ArsI GACNNNNNNTTYG 2 cut(s) 818, 850
AseI ATTAAT 1 cut(s) 33
AspA2I CCTAGG 1 cut(s) 914
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 129
AvrII CCTAGG 1 cut(s) 914
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 909
BccI CCATC 3 cut(s) 65, 368, 713
BceAI ACGGC 1 cut(s) 638
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BclI TGATCA 2 cut(s) 406, 931
BcoDI GTCTC 1 cut(s) 607
BfaI CTAG 4 cut(s) 348, 915, 981, 1023
BisI GCNGC 1 cut(s) 765
BlnI CCTAGG 1 cut(s) 914
BlsI GCNGC 1 cut(s) 766
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 2 cut(s) 93, 557
BmsI GCATC 3 cut(s) 628, 739, 850
BpiI GAAGAC 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 554, 586
BsaBI GATNNNNATC 1 cut(s) 711
BsaJI CCNNGG 2 cut(s) 432, 914
BsaXI ACNNNNNCTCC 2 cut(s) 774, 804
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 848
Bse8I GATNNNNATC 1 cut(s) 711
BseDI CCNNGG 2 cut(s) 432, 914
BseGI GGATG 2 cut(s) 144, 319
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 2 cut(s) 134, 848
BseRI GAGGAG 1 cut(s) 104
BseYI CCCAGC 1 cut(s) 551
BshFI GGCC 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 909
BsiHKCI CYCGRG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 134, 848
BsmAI GTCTC 1 cut(s) 607
BsmBI CGTCTC 1 cut(s) 607
BsnI GGCC 1 cut(s) 558
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 909
Bsp143I GATC 4 cut(s) 387, 406, 712, 931
BspACI CCGC 1 cut(s) 764
BspANI GGCC 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 93, 557
BspQI GCTCTTC 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 432, 914
BssMI GATC 4 cut(s) 387, 406, 712, 931
BssT1I CCWWGG 2 cut(s) 432, 914
Bst4CI ACNGT 1 cut(s) 1037
Bst6I CTCTTC 2 cut(s) 117, 209
BstC8I GCNNGC 2 cut(s) 675, 909
BstDEI CTNAG 1 cut(s) 370
BstF5I GGATG 2 cut(s) 144, 319
BstKTI GATC 4 cut(s) 390, 409, 715, 934
BstMAI GTCTC 1 cut(s) 607
BstMBI GATC 4 cut(s) 387, 406, 712, 931
BstNSI RCATGY 2 cut(s) 832, 897
BstV2I GAAGAC 1 cut(s) 51
BsuRI GGCC 1 cut(s) 558
BtgZI GCGATG 1 cut(s) 651
BtsCI GGATG 2 cut(s) 144, 319
Cac8I GCNNGC 2 cut(s) 675, 909
Cfr13I GGNCC 1 cut(s) 556
CviAII CATG 8 cut(s) 267, 416, 560, 829, 894, 902, 946, 1060
DdeI CTNAG 1 cut(s) 370
DpnI GATC 4 cut(s) 389, 408, 714, 933
DpnII GATC 4 cut(s) 387, 406, 712, 931
Eam1104I CTCTTC 2 cut(s) 117, 209
EarI CTCTTC 2 cut(s) 117, 209
Eco130I CCWWGG 2 cut(s) 432, 914
Eco88I CYCGRG 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 432, 914
EcoT22I ATGCAT 1 cut(s) 903
ErhI CCWWGG 2 cut(s) 432, 914
Esp3I CGTCTC 1 cut(s) 607
FaeI CATG 8 cut(s) 270, 419, 563, 832, 897, 905, 949, 1063
FatI CATG 8 cut(s) 266, 415, 559, 828, 893, 901, 945, 1059
FbaI TGATCA 2 cut(s) 406, 931
Fnu4HI GCNGC 1 cut(s) 765
FokI GGATG 2 cut(s) 151, 306
Fsp4HI GCNGC 1 cut(s) 765
FspBI CTAG 4 cut(s) 348, 915, 981, 1023
GluI GCNGC 1 cut(s) 765
GsaI CCCAGC 1 cut(s) 555
HaeIII GGCC 1 cut(s) 558
Hin1II CATG 8 cut(s) 270, 419, 563, 832, 897, 905, 949, 1063
HinfI GANTC 1 cut(s) 424
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 459, 666
Hpy188III TCNNGA 4 cut(s) 38, 275, 716, 935
HpyAV CCTTC 5 cut(s) 272, 372, 626, 1093, 1109
HpyCH4III ACNGT 1 cut(s) 1037
HpyCH4V TGCA 7 cut(s) 342, 647, 673, 701, 752, 901, 1072
HpyF3I CTNAG 1 cut(s) 370
Hsp92II CATG 8 cut(s) 270, 419, 563, 832, 897, 905, 949, 1063
Ksp22I TGATCA 2 cut(s) 406, 931
Kzo9I GATC 4 cut(s) 387, 406, 712, 931
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 3 cut(s) 91, 844, 916
LpnPI CCDG 3 cut(s) 108, 492, 537
LweI GCATC 3 cut(s) 628, 739, 850
MaeI CTAG 4 cut(s) 348, 915, 981, 1023
MaeIII GTNAC 3 cut(s) 256, 790, 1037
MalI GATC 4 cut(s) 389, 408, 714, 933
MboI GATC 4 cut(s) 387, 406, 712, 931
MboII GAAGA 5 cut(s) 53, 56, 134, 226, 685
MfeI CAATTG 1 cut(s) 702
MhlI GDGCHC 1 cut(s) 909
MlyI GAGTC 1 cut(s) 433
MmeI TCCRAC 1 cut(s) 452
MnlI CCTC 5 cut(s) 82, 138, 204, 232, 477
Mph1103I ATGCAT 1 cut(s) 903
MseI TTAA 6 cut(s) 33, 147, 494, 518, 728, 879
MslI CAYNNNNRTG 2 cut(s) 414, 896
MunI CAATTG 1 cut(s) 702
NdeII GATC 4 cut(s) 387, 406, 712, 931
NlaIII CATG 8 cut(s) 270, 419, 563, 832, 897, 905, 949, 1063
NlaIV GGNNCC 2 cut(s) 93, 557
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 903
NspI RCATGY 2 cut(s) 832, 897
PaeR7I CTCGAG 1 cut(s) 129
PciI ACATGT 1 cut(s) 893
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 445
PkrI GCNGC 1 cut(s) 766
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
PscI ACATGT 1 cut(s) 893
PshBI ATTAAT 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 551
PspN4I GGNNCC 2 cut(s) 93, 557
PspPI GGNCC 1 cut(s) 556
PspXI VCTCGAGB 1 cut(s) 129
RseI CAYNNNNRTG 2 cut(s) 414, 896
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 6 cut(s) 33, 147, 494, 518, 728, 879
SatI GCNGC 1 cut(s) 765
Sau3AI GATC 4 cut(s) 387, 406, 712, 931
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 1 cut(s) 433
SduI GDGCHC 1 cut(s) 909
SfaNI GCATC 3 cut(s) 628, 739, 850
Sfr274I CTCGAG 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 414, 896
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SsiI CCGC 1 cut(s) 764
SspMI CTAG 4 cut(s) 348, 915, 981, 1023
StyI CCWWGG 2 cut(s) 432, 914
TaaI ACNGT 1 cut(s) 1037
TaqI TCGA 4 cut(s) 8, 130, 274, 448
TauI GCSGC 1 cut(s) 767
Tru1I TTAA 6 cut(s) 33, 147, 494, 518, 728, 879
Tru9I TTAA 6 cut(s) 33, 147, 494, 518, 728, 879
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 8 cut(s) 15, 255, 459, 491, 525, 962, 1025, 1065
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 3 cut(s) 682, 688, 776
XceI RCATGY 2 cut(s) 832, 897
XhoI CTCGAG 1 cut(s) 129
XmaJI CCTAGG 1 cut(s) 914
XspI CTAG 4 cut(s) 348, 915, 981, 1023
Zsp2I ATGCAT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.