FvH4_7g19111

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000252
Physical Location & Seq
Reverse (-)
15861319 .. 15862864
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19111.t1

Sequence Viewer

Length: 1203 bp
ATGGCCGGCGTTCCAGAGAAATACATTTTAAAGCGATGGAAAGCAAGTGTAAAAAGAAGTCATAGCAAAGTGAAGATAAGCTATGGCAATTGGATTGCCAAGCCTGAAACACAAAGGAATGATAAGATGTGCAATTTGTTCTGTGAGGTGGCAGACTTAGCAGATGACAATGAGGAAGACTATAACATGGTGATGGGGATATTGAATGACCTGAAAGTGAAACTGACTCAAAGTAAAGTTGATTGCGAAAGGAAAGGAGATGATATGAAGTTGGTTGAGAAGACATCAGATGATGAAAAACTTTCAGAGAATGGTTGCAAAATACTTGATCCATTATCTGCTCGAAGTAAAGGTCTTCCTCCAGTAAATCGAAAGCAATCTACGACTGAGCAGATTATTAGAAGAAGAAAAGAATTTGAAGCTGCAAAAGCATGTAATGACAAATACAAACTCCAGGATTTTGAAATACTGAATAACACCAGTGATGTCTTTGGGACGCAAGAAAGCACTCTACTTCAGGCATCTCAAGTTTGTACCAAGTTGCCATATGCCAAAACTAATACGTACACAAATCAATTTCCAAAAGGATATCATCAGTATATTGCATCCCAAACTGATGTAACAGCAGATGGTAATTGTGGATATAGAGTCGTAGCTGAGGCGATGGGATTTGGTCAAAAAGCTTGGCGTAATGTCCGAAAAGATCTGTTGCAAGAGTTACAAAGTATGCCTTCCTTATATAAAGATCTTATATATGGCCCCAAACGGTATGAGGAGTTTAAGCATGCACTTAATTTTGATAAGACTGGTTATGCAAAGAAAGAGTATTGGATGAGTATGCCGGATATGGGGTATCTAATTTCCACGTACTATAAGGTGATCGTGATCTATTTATCCAATGCACAATGTCTTACTCTCCTTCCTTTGATGTTGCCTTCTGAGTTGCATGACCTTGAGTTACCTGAGATTGCCATAGGATTTGTCAAGATTGGGAATAAAGGGCATTTTGTACAGGTGAATTTGTCATCAGGGTTGGTACCTATACCTCCAATTTCAAGTGAGTGGCACAAGAATAATGATGAAACTGCAGAACACTTGTACCTTAGATACCAAGCCCGTGAAGAGAAATTCAAACAAGTGCTCCCGAGTGCCCATGTTGCTGGTGTCACAAAAATTATGGATCTTGATGATGACTCGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

401

Amino Acids

45.68

Weight (kDa)

7.54

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1036
AccB1I GGYRCC 1 cut(s) 1036
AclWI GGATC 2 cut(s) 323, 1188
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 413, 1018, 1127
AcuI CTGAAG 1 cut(s) 500
AfaI GTAC 6 cut(s) 535, 566, 869, 1011, 1038, 1100
AfiI CCNNNNNNNGG 1 cut(s) 848
AgsI TTSAA 5 cut(s) 205, 419, 464, 1056, 1132
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 4 cut(s) 81, 422, 656, 683
AluI AGCT 4 cut(s) 81, 422, 656, 683
Alw21I GWGCWC 1 cut(s) 1143
AlwI GGATC 2 cut(s) 323, 1188
Ama87I CYCGRG 1 cut(s) 1144
AoxI GGCC 2 cut(s) 3, 757
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 3 cut(s) 413, 1018, 1127
ArsI GACNNNNNNTTYG 2 cut(s) 337, 369
Asp718I GGTACC 1 cut(s) 1036
AspS9I GGNCC 1 cut(s) 758
AsuHPI GGTGA 3 cut(s) 202, 889, 1027
AvaI CYCGRG 1 cut(s) 1144
BaeGI GKGCMC 1 cut(s) 1153
BaeI ACNNNNGTAYC 2 cut(s) 1082, 1115
BanI GGYRCC 1 cut(s) 1036
BbsI GAAGAC 3 cut(s) 183, 287, 347
Bbv12I GWGCWC 1 cut(s) 1143
BbvCI CCTCAGC 1 cut(s) 657
BbvI GCAGC 1 cut(s) 409
BccI CCATC 4 cut(s) 30, 187, 623, 658
BciT130I CCWGG 1 cut(s) 455
BfmI CTRYAG 1 cut(s) 1086
BglII AGATCT 2 cut(s) 703, 745
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme1390I CCNGG 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 1144
BmgT120I GGNCC 1 cut(s) 758
BmiI GGNNCC 2 cut(s) 760, 1038
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 2 cut(s) 530, 614
BpiI GAAGAC 3 cut(s) 183, 287, 347
BpmI CTGGAG 2 cut(s) 345, 437
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 2 cut(s) 510, 974
BsaAI YACGTR 2 cut(s) 564, 867
BsaBI GATNNNNATC 1 cut(s) 884
BsaXI ACNNNNNCTCC 2 cut(s) 1125, 1155
Bsc4I CCNNNNNNNGG 1 cut(s) 848
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 3 cut(s) 362, 480, 811
Bse8I GATNNNNATC 1 cut(s) 884
BseBI CCWGG 1 cut(s) 455
BseGI GGATG 2 cut(s) 605, 837
BseJI GATNNNNATC 1 cut(s) 884
BseLI CCNNNNNNNGG 1 cut(s) 848
BseMII CTCAG 4 cut(s) 378, 648, 930, 954
BseNI ACTGG 3 cut(s) 362, 480, 811
BseRI GAGGAG 1 cut(s) 788
BseSI GKGCMC 1 cut(s) 1153
BseXI GCAGC 1 cut(s) 409
BshFI GGCC 2 cut(s) 5, 759
BshNI GGYRCC 1 cut(s) 1036
BsiHKAI GWGCWC 1 cut(s) 1143
BsiHKCI CYCGRG 1 cut(s) 1144
BsiSI CCGG 2 cut(s) 6, 842
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 1 cut(s) 848
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 2 cut(s) 5, 759
BsoBI CYCGRG 1 cut(s) 1144
Bsp1286I GDGCHC 2 cut(s) 1143, 1153
Bsp1407I TGTACA 1 cut(s) 1009
Bsp143I GATC 6 cut(s) 328, 703, 745, 879, 885, 1180
BspANI GGCC 2 cut(s) 5, 759
BspCNI CTCAG 4 cut(s) 379, 649, 931, 955
BspLI GGNNCC 2 cut(s) 760, 1038
BspMAI CTGCAG 1 cut(s) 1090
BspPI GGATC 2 cut(s) 323, 1188
BspT107I GGYRCC 1 cut(s) 1036
BsrFI RCCGGY 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 1009
BsrI ACTGG 3 cut(s) 362, 480, 811
BssAI RCCGGY 1 cut(s) 5
BssMI GATC 6 cut(s) 328, 703, 745, 879, 885, 1180
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 1 cut(s) 768
Bst6I CTCTTC 1 cut(s) 1116
BstAUI TGTACA 1 cut(s) 1009
BstBAI YACGTR 2 cut(s) 564, 867
BstC8I GCNNGC 2 cut(s) 7, 786
BstDEI CTNAG 6 cut(s) 157, 387, 657, 939, 963, 1103
BstF5I GGATG 2 cut(s) 605, 837
BstKTI GATC 6 cut(s) 331, 706, 748, 882, 888, 1183
BstMBI GATC 6 cut(s) 328, 703, 745, 879, 885, 1180
BstMWI GCNNNNNNNGC 3 cut(s) 158, 428, 1157
BstNI CCWGG 1 cut(s) 455
BstNSI RCATGY 2 cut(s) 435, 788
BstSCI CCNGG 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 1086
BstSLI GKGCMC 1 cut(s) 1153
BstSNI TACGTA 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 409
BstV2I GAAGAC 3 cut(s) 183, 287, 347
BstX2I RGATCY 3 cut(s) 703, 745, 1180
BstXI CCANNNNNNTGG 1 cut(s) 1160
BstYI RGATCY 3 cut(s) 703, 745, 1180
BsuRI GGCC 2 cut(s) 5, 759
BtgZI GCGATG 2 cut(s) 49, 677
BtsCI GGATG 2 cut(s) 605, 837
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 2 cut(s) 7, 786
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 1 cut(s) 758
CseI GACGC 1 cut(s) 505
Csp6I GTAC 6 cut(s) 534, 565, 868, 1010, 1037, 1099
CviAII CATG 6 cut(s) 187, 432, 785, 947, 1154, 1200
CviJI RGCY 8 cut(s) 5, 81, 103, 422, 656, 683, 759, 1115
CviKI_1 RGCY 8 cut(s) 5, 81, 103, 422, 656, 683, 759, 1115
CviQI GTAC 6 cut(s) 534, 565, 868, 1010, 1037, 1099
DdeI CTNAG 6 cut(s) 157, 387, 657, 939, 963, 1103
DpnI GATC 6 cut(s) 330, 705, 747, 881, 887, 1182
DpnII GATC 6 cut(s) 328, 703, 745, 879, 885, 1180
DraI TTTAAA 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1116
EarI CTCTTC 1 cut(s) 1116
Eco105I TACGTA 1 cut(s) 564
Eco32I GATATC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 1144
EcoRII CCWGG 1 cut(s) 453
EcoRV GATATC 1 cut(s) 590
FaeI CATG 6 cut(s) 190, 435, 788, 950, 1157, 1203
FalI AAGNNNNNCTT 2 cut(s) 715, 747
FaqI GGGAC 1 cut(s) 508
FatI CATG 6 cut(s) 186, 431, 784, 946, 1153, 1199
FauNDI CATATG 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 2 cut(s) 592, 844
Fsp4HI GCNGC 1 cut(s) 423
GluI GCNGC 1 cut(s) 423
GsuI CTGGAG 2 cut(s) 345, 437
HaeIII GGCC 2 cut(s) 5, 759
HapII CCGG 2 cut(s) 6, 842
HgaI GACGC 1 cut(s) 505
Hin1II CATG 6 cut(s) 190, 435, 788, 950, 1157, 1203
HindIII AAGCTT 1 cut(s) 681
HinfI GANTC 3 cut(s) 226, 648, 1193
HpaII CCGG 2 cut(s) 6, 842
HphI GGTGA 3 cut(s) 202, 889, 1027
Hpy166II GTNNAC 1 cut(s) 567
Hpy188I TCNGA 4 cut(s) 289, 307, 698, 940
Hpy188III TCNNGA 5 cut(s) 14, 883, 985, 1144, 1184
Hpy8I GTNNAC 1 cut(s) 567
HpyAV CCTTC 3 cut(s) 741, 929, 945
HpyCH4III ACNGT 1 cut(s) 768
HpyCH4IV ACGT 2 cut(s) 563, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 428, 1157
HpyF3I CTNAG 6 cut(s) 157, 387, 657, 939, 963, 1103
HpySE526I ACGT 2 cut(s) 563, 866
Hsp92II CATG 6 cut(s) 190, 435, 788, 950, 1157, 1203
KpnI GGTACC 1 cut(s) 1040
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 6 cut(s) 328, 703, 745, 879, 885, 1180
LmnI GCTCC 1 cut(s) 1146
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 2 cut(s) 530, 614
MaeII ACGT 2 cut(s) 563, 866
MaeIII GTNAC 4 cut(s) 619, 717, 957, 1165
MalI GATC 6 cut(s) 330, 705, 747, 881, 887, 1182
MboI GATC 6 cut(s) 328, 703, 745, 879, 885, 1180
MboII GAAGA 7 cut(s) 85, 188, 292, 347, 414, 417, 1133
MfeI CAATTG 1 cut(s) 88
MflI RGATCY 3 cut(s) 703, 745, 1180
MhlI GDGCHC 2 cut(s) 1143, 1153
MlyI GAGTC 3 cut(s) 220, 657, 1187
MnlI CCTC 6 cut(s) 139, 166, 369, 652, 766, 1056
MroNI GCCGGC 1 cut(s) 5
MseI TTAA 3 cut(s) 29, 780, 792
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 2 cut(s) 6, 842
MspR9I CCNGG 1 cut(s) 455
MunI CAATTG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 3 cut(s) 158, 428, 1157
NaeI GCCGGC 1 cut(s) 7
NdeI CATATG 1 cut(s) 547
NdeII GATC 6 cut(s) 328, 703, 745, 879, 885, 1180
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 6 cut(s) 190, 435, 788, 950, 1157, 1203
NlaIV GGNNCC 2 cut(s) 760, 1038
NmeAIII GCCGAG 1 cut(s) 1175
NmuCI GTSAC 1 cut(s) 1165
NspI RCATGY 2 cut(s) 435, 788
PaeI GCATGC 1 cut(s) 788
PdiI GCCGGC 1 cut(s) 7
PfoI TCCNGGA 1 cut(s) 453
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 3 cut(s) 220, 656, 1187
PpsI GAGTC 3 cut(s) 220, 656, 1187
Ppu21I YACGTR 2 cut(s) 564, 867
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 760, 1038
PspPI GGNCC 1 cut(s) 758
PstI CTGCAG 1 cut(s) 1090
PsuI RGATCY 3 cut(s) 703, 745, 1180
RsaI GTAC 6 cut(s) 535, 566, 869, 1011, 1038, 1100
RsaNI GTAC 6 cut(s) 534, 565, 868, 1010, 1037, 1099
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 3 cut(s) 29, 780, 792
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 6 cut(s) 328, 703, 745, 879, 885, 1180
Sau96I GGNCC 1 cut(s) 758
SchI GAGTC 3 cut(s) 220, 657, 1187
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 2 cut(s) 1143, 1153
SfaNI GCATC 2 cut(s) 530, 614
SfcI CTRYAG 1 cut(s) 1086
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 525, 953
SmoI CTYRAG 2 cut(s) 525, 953
SnaBI TACGTA 1 cut(s) 564
SphI GCATGC 1 cut(s) 788
StyD4I CCNGG 1 cut(s) 453
TaaI ACNGT 1 cut(s) 768
TaiI ACGT 2 cut(s) 566, 869
TaqI TCGA 2 cut(s) 343, 370
TatI WGTACW 1 cut(s) 1009
Tru1I TTAA 3 cut(s) 29, 780, 792
Tru9I TTAA 3 cut(s) 29, 780, 792
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 1165
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 1165
TspDTI ATGAA 3 cut(s) 281, 309, 1095
TspRI CASTG 1 cut(s) 487
XapI RAATTY 3 cut(s) 413, 1018, 1127
XceI RCATGY 2 cut(s) 435, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.