Rh6CG164000

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000252
Physical Location & Seq
Reverse (-)
22301192 .. 22302050
859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG164000.1

Sequence Viewer

Length: 447 bp
ATGGAACAATCGTCCAACGATTCAGAGGACATTATTCTCACTAATGATGAAGGAACAGTGGATGATTCATTAAAGAGCTTAGAGGATGATCAAGAAAATGAGGAGGAAGAAATTATTCTCACTAATGACCAAGAAAAATTTAAAAGTAAGTCAAGTAACTCTCTAAAGCCGCATCCAAGTGTGAAGACCGATTGCAAGGCACTTATTAGACTTGATAAATCCCTTGATGGAAAGTGGAAAATCAATTCTACAAAGCTTGAGCATAACCATGGTTTGAGTCCAAGAAAATCTCGTTATTTCCCAGTCAATCGTGAATTAAGTTCATCAATAAAAAGAAGGCTTGAACTAAATGATGTTGCTAGAATAGGGTTAAACAAGAGTTTTAACTCAATTGTTGTTGAAGCTCAGGGATATGAGAATGTACCATTTTTAGAAAAGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

148

Amino Acids

16.85

Weight (kDa)

5.06

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 48 - 93 2e-08 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 1 cut(s) 423
AgsI TTSAA 2 cut(s) 344, 401
AluBI AGCT 3 cut(s) 78, 256, 404
AluI AGCT 3 cut(s) 78, 256, 404
ApoI RAATTY 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 191
BccI CCATC 1 cut(s) 221
BclI TGATCA 1 cut(s) 88
BfaI CTAG 1 cut(s) 360
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 2 cut(s) 181, 430
BmuI ACTGGG 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 4 cut(s) 67, 91, 172, 445
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 116
Bsp143I GATC 1 cut(s) 88
Bsp19I CCATGG 1 cut(s) 268
BspACI CCGC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 418
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 79, 405
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 4 cut(s) 67, 91, 172, 445
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 4 cut(s) 67, 91, 172, 445
BtsIMutI CAGTG 1 cut(s) 63
Csp6I GTAC 1 cut(s) 422
CviAII CATG 1 cut(s) 269
CviJI RGCY 5 cut(s) 78, 169, 256, 340, 404
CviKI_1 RGCY 5 cut(s) 78, 169, 256, 340, 404
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 2 cut(s) 79, 405
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 1 cut(s) 272
FaiI YATR 3 cut(s) 264, 270, 414
FatI CATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 3 cut(s) 74, 98, 159
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 1 cut(s) 360
GluI GCNGC 1 cut(s) 170
Hin1II CATG 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 3 cut(s) 20, 65, 277
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 92, 311
HpyAV CCTTC 2 cut(s) 44, 330
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 195
HpyF3I CTNAG 2 cut(s) 79, 405
Hsp92II CATG 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 2 cut(s) 315, 392
LweI GCATC 2 cut(s) 181, 430
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 119, 196
MfeI CAATTG 1 cut(s) 390
MluCI AATT 5 cut(s) 111, 137, 244, 314, 390
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 4 cut(s) 19, 76, 94, 97
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 5 cut(s) 71, 141, 317, 371, 384
MslI CAYNNNNRTG 2 cut(s) 177, 267
MunI CAATTG 1 cut(s) 390
NcoI CCATGG 1 cut(s) 268
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 20, 65
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
RseI CAYNNNNRTG 2 cut(s) 177, 267
SaqAI TTAA 5 cut(s) 71, 141, 317, 371, 384
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 1 cut(s) 88
SchI GAGTC 1 cut(s) 286
SetI ASST 3 cut(s) 80, 258, 406
SfaNI GCATC 2 cut(s) 181, 430
SmiMI CAYNNNNRTG 2 cut(s) 177, 267
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 5 cut(s) 111, 137, 244, 314, 390
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 58
TaqII GACCGA 1 cut(s) 203
TasI AATT 5 cut(s) 111, 137, 244, 314, 390
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 2 cut(s) 20, 65
Tru1I TTAA 5 cut(s) 71, 141, 317, 371, 384
Tru9I TTAA 5 cut(s) 71, 141, 317, 371, 384
TscAI CASTG 1 cut(s) 63
TspDTI ATGAA 3 cut(s) 57, 63, 312
TspRI CASTG 1 cut(s) 63
XapI RAATTY 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.