Rh7DG479900

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000252
Physical Location & Seq
Reverse (-)
68497285 .. 68505669
8385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG479900.1

Sequence Viewer

Length: 1215 bp
ATGTCTACAACTCAGCATAGCGAGAGCATGAATGCATTCTTTGATGGGTATGTAAACTCAAAGACTACACTAAAGCAGTTTGTGGAGCAATATGAGAATGCTTTACGAGATAAAGTTGAGAAAGAGAATCTTGCAGATTTTCAGTCTTTCAATTCAAAGATTCCTTGTTTCACAATGTACAATATTGAGAAGCAATATCATGATGCTTACACAAATACAAAGTTCAAAGAGTTTCAGAAAGAGTTAGAAGGAAAGATGCATTGCGGCATATCATCATCTGAAAGGAATGATACAATTATAGATATAACTGTGGATGAAGATGTAAAGATTGGTACAGAAATGAGACCAGTCCCGTTCATAGTTCATTTCAATGAGGACAGAGGAATATTATGTCGGCATGCAATTGTGGTTCTAATTCATAAAAATATGGCCGGCGTTCCAGAGAAATACATTTTAAAACGATGGACAGCAAGTGTAAAACGAAGTCATAGCAAAGTGAAAATAAGCTATGGCAATTGGACTGCCAAGCCTGAAACACAAAGAAATGATAAGATGTATAATTTGTTTTATGAGGTGGCAGACTTAGCAAATAGCAAAGAAGAAGATTGTAACATGGTGATGGGGATATCAAATGATCTGAAAATGAAATTGACTCAAAGTTTCATATGTGGTTTCCGAATGGGGTTTCGATTAGAGTTCCAAAAGGTGGAACGGTCCAGATCATCGTCGCCGTCCACCTCCAGCAGCTCTCTCTACCTCTCCAAGTGCCTCCTCCGAGGCACCGTCGTTCTCCAGGTCCTCTACGGTCACATCCGCTTCCCTAACTCCAACGACAACGAGAAATCGATAGAGTTGGTGATAATTGGTGAAGATGGGGGATTGTATAGTCTATATGTGAGCAGCCTGTGTGTGGCACCATTAAAGACATTGCCGTCCTACCATGGAATGATAGATTCCGAACTCGAAACTGTCAGCACAAATGCTACTCCTTTTGGAGAGGAGAACTTGCTTTCTTCTTCAGAGTTAACGCAAGCACAGGAGATTGATTTCATTCTATGCTTTCTGCTTTTCAACGTTCCCTTCACTCTTTTACTCAATTTGCAACAGATAGCTACACGGATGTCTACTGCTTTAAGCATGGGGAATAACCATGAGTATGATATGGCAGTTAAAGTTGAAAAGGTCGTCCTCCAATCAACCGAAAACAATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

404

Amino Acids

46.05

Weight (kDa)

5.87

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 931
AccB1I GGYRCC 2 cut(s) 779, 913
AccB7I CCANNNNNTGG 1 cut(s) 706
AccI GTMKAC 2 cut(s) 5, 1124
AciI CCGC 2 cut(s) 264, 814
AclI AACGTT 1 cut(s) 1074
AcoI YGGCCR 1 cut(s) 429
AcuI CTGAAG 1 cut(s) 1002
AfaI GTAC 2 cut(s) 179, 334
AfiI CCNNNNNNNGG 2 cut(s) 706, 910
AgsI TTSAA 6 cut(s) 151, 156, 226, 370, 1072, 1178
AjnI CCWGG 1 cut(s) 792
AluBI AGCT 3 cut(s) 507, 747, 1112
AluI AGCT 3 cut(s) 507, 747, 1112
Alw26I GTCTC 1 cut(s) 337
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 744, 900
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 714, 796
AsuHPI GGTGA 3 cut(s) 628, 868, 878
AvaII GGWCC 2 cut(s) 714, 796
BanI GGYRCC 2 cut(s) 779, 913
BbvI GCAGC 2 cut(s) 756, 912
BccI CCATC 4 cut(s) 38, 456, 613, 866
BceAI ACGGC 2 cut(s) 715, 916
BciT130I CCWGG 1 cut(s) 794
BcoDI GTCTC 1 cut(s) 337
BisI GCNGC 3 cut(s) 265, 745, 901
BlsI GCNGC 3 cut(s) 266, 746, 902
Bme1390I CCNGG 1 cut(s) 794
Bme18I GGWCC 2 cut(s) 714, 796
BmgT120I GGNCC 2 cut(s) 714, 796
BmiI GGNNCC 2 cut(s) 781, 915
BmrFI CCNGG 1 cut(s) 794
BmsI GCATC 2 cut(s) 193, 246
BpmI CTGGAG 2 cut(s) 724, 776
Bsa29I ATCGAT 1 cut(s) 845
BsaI GGTCTC 1 cut(s) 337
BsaJI CCNNGG 2 cut(s) 775, 940
Bsc4I CCNNNNNNNGG 2 cut(s) 706, 910
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 2 cut(s) 259, 926
BseBI CCWGG 1 cut(s) 794
BseCI ATCGAT 1 cut(s) 845
BseDI CCNNGG 2 cut(s) 775, 940
BseGI GGATG 3 cut(s) 319, 810, 1125
BseLI CCNNNNNNNGG 2 cut(s) 706, 910
BseMI GCAATG 2 cut(s) 259, 926
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 347
BseRI GAGGAG 2 cut(s) 761, 1013
BseXI GCAGC 2 cut(s) 756, 912
BshFI GGCC 1 cut(s) 431
BshNI GGYRCC 2 cut(s) 779, 913
BshVI ATCGAT 1 cut(s) 845
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 706, 910
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 335
BsmI GAATGC 3 cut(s) 35, 37, 103
BsnI GGCC 1 cut(s) 431
Bso31I GGTCTC 1 cut(s) 337
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 2 cut(s) 634, 719
Bsp19I CCATGG 1 cut(s) 940
BspACI CCGC 2 cut(s) 264, 814
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 1 cut(s) 25
BspDI ATCGAT 1 cut(s) 845
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 781, 915
BspT107I GGYRCC 2 cut(s) 779, 913
BspTNI GGTCTC 1 cut(s) 337
BsrDI GCAATG 2 cut(s) 259, 926
BsrFI RCCGGY 1 cut(s) 431
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 347
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 2 cut(s) 775, 940
BssMI GATC 2 cut(s) 634, 719
BssT1I CCWWGG 1 cut(s) 940
Bst2UI CCWGG 1 cut(s) 794
Bst4CI ACNGT 5 cut(s) 310, 714, 784, 806, 970
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 3 cut(s) 399, 433, 1032
BstDEI CTNAG 2 cut(s) 12, 583
BstDSI CCRYGG 1 cut(s) 940
BstF5I GGATG 3 cut(s) 319, 810, 1125
BstKTI GATC 2 cut(s) 637, 722
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 2 cut(s) 634, 719
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstNI CCWGG 1 cut(s) 794
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 792
BstV1I GCAGC 2 cut(s) 756, 912
Bsu15I ATCGAT 1 cut(s) 845
BsuRI GGCC 1 cut(s) 431
BsuTUI ATCGAT 1 cut(s) 845
BtgI CCRYGG 1 cut(s) 940
BtsCI GGATG 3 cut(s) 319, 810, 1125
Cac8I GCNNGC 3 cut(s) 399, 433, 1032
CciI TCATGA 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 2 cut(s) 714, 796
ClaI ATCGAT 1 cut(s) 845
Csp6I GTAC 2 cut(s) 178, 333
CviAII CATG 7 cut(s) 28, 200, 398, 613, 941, 1138, 1151
CviJI RGCY 6 cut(s) 431, 507, 529, 747, 903, 1112
CviKI_1 RGCY 6 cut(s) 431, 507, 529, 747, 903, 1112
CviQI GTAC 2 cut(s) 178, 333
DdeI CTNAG 2 cut(s) 12, 583
DpnI GATC 2 cut(s) 636, 721
DpnII GATC 2 cut(s) 634, 719
DraI TTTAAA 1 cut(s) 456
DrdI GACNNNNNNGTC 1 cut(s) 931
DseDI GACNNNNNNGTC 1 cut(s) 931
EaeI YGGCCR 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 940
Eco31I GGTCTC 1 cut(s) 337
Eco32I GATATC 1 cut(s) 627
Eco47I GGWCC 2 cut(s) 714, 796
Eco57I CTGAAG 1 cut(s) 1002
EcoO109I RGGNCCY 1 cut(s) 796
EcoRII CCWGG 1 cut(s) 792
EcoRV GATATC 1 cut(s) 627
EcoT14I CCWWGG 1 cut(s) 940
EcoT22I ATGCAT 2 cut(s) 37, 261
ErhI CCWWGG 1 cut(s) 940
FaeI CATG 7 cut(s) 31, 203, 401, 616, 944, 1141, 1154
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 1 cut(s) 335
FatI CATG 7 cut(s) 27, 199, 397, 612, 940, 1137, 1150
FauNDI CATATG 1 cut(s) 665
FblI GTMKAC 2 cut(s) 5, 1124
Fnu4HI GCNGC 3 cut(s) 265, 745, 901
FokI GGATG 3 cut(s) 326, 797, 1132
Fsp4HI GCNGC 3 cut(s) 265, 745, 901
GluI GCNGC 3 cut(s) 265, 745, 901
GsuI CTGGAG 2 cut(s) 724, 776
HaeIII GGCC 1 cut(s) 431
HapII CCGG 1 cut(s) 432
Hin1II CATG 7 cut(s) 31, 203, 401, 616, 944, 1141, 1154
HincII GTYRAC 1 cut(s) 1026
HindII GTYRAC 1 cut(s) 1026
HinfI GANTC 4 cut(s) 127, 160, 652, 953
HpaI GTTAAC 1 cut(s) 1026
HpaII CCGG 1 cut(s) 432
HphI GGTGA 3 cut(s) 628, 868, 878
Hpy166II GTNNAC 5 cut(s) 6, 55, 735, 1026, 1125
Hpy188I TCNGA 7 cut(s) 237, 280, 639, 677, 776, 958, 1021
Hpy188III TCNNGA 3 cut(s) 200, 440, 717
Hpy8I GTNNAC 5 cut(s) 6, 55, 735, 1026, 1125
Hpy99I CGWCG 2 cut(s) 730, 788
HpyAV CCTTC 2 cut(s) 242, 1090
HpyCH4III ACNGT 5 cut(s) 310, 714, 784, 806, 970
HpyCH4IV ACGT 1 cut(s) 1074
HpyCH4V TGCA 5 cut(s) 35, 134, 259, 401, 1102
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
HpyF3I CTNAG 2 cut(s) 12, 583
HpySE526I ACGT 1 cut(s) 1074
Hsp92II CATG 7 cut(s) 31, 203, 401, 616, 944, 1141, 1154
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
KspAI GTTAAC 1 cut(s) 1026
Kzo9I GATC 2 cut(s) 634, 719
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 2 cut(s) 756, 912
LweI GCATC 2 cut(s) 193, 246
MaeII ACGT 1 cut(s) 1074
MaeIII GTNAC 2 cut(s) 608, 806
MalI GATC 2 cut(s) 636, 721
MboI GATC 2 cut(s) 634, 719
MboII GAAGA 6 cut(s) 329, 611, 614, 881, 1005, 1008
MfeI CAATTG 2 cut(s) 402, 514
MluCI AATT 9 cut(s) 151, 294, 402, 414, 514, 559, 647, 861, 1096
MlyI GAGTC 1 cut(s) 646
MmeI TCCRAC 1 cut(s) 852
Mph1103I ATGCAT 2 cut(s) 37, 261
MroNI GCCGGC 1 cut(s) 431
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 5 cut(s) 455, 920, 1025, 1133, 1170
MslI CAYNNNNRTG 3 cut(s) 369, 617, 1155
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 794
MunI CAATTG 2 cut(s) 402, 514
Mva1269I GAATGC 3 cut(s) 35, 37, 103
MvaI CCWGG 1 cut(s) 794
MwoI GCNNNNNNNGC 1 cut(s) 584
NaeI GCCGGC 1 cut(s) 433
NcoI CCATGG 1 cut(s) 940
NdeI CATATG 1 cut(s) 665
NdeII GATC 2 cut(s) 634, 719
NgoMIV GCCGGC 1 cut(s) 431
NlaIII CATG 7 cut(s) 31, 203, 401, 616, 944, 1141, 1154
NlaIV GGNNCC 2 cut(s) 781, 915
NmuCI GTSAC 1 cut(s) 806
NsiI ATGCAT 2 cut(s) 37, 261
NspI RCATGY 1 cut(s) 401
PaeI GCATGC 1 cut(s) 401
PagI TCATGA 1 cut(s) 199
PctI GAATGC 3 cut(s) 35, 37, 103
PdiI GCCGGC 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 3 cut(s) 127, 160, 953
PflMI CCANNNNNTGG 1 cut(s) 706
PkrI GCNGC 3 cut(s) 266, 746, 902
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PpuMI RGGWCCY 1 cut(s) 796
Psp1406I AACGTT 1 cut(s) 1074
Psp5II RGGWCCY 1 cut(s) 796
Psp6I CCWGG 1 cut(s) 792
PspGI CCWGG 1 cut(s) 792
PspN4I GGNNCC 2 cut(s) 781, 915
PspPI GGNCC 2 cut(s) 714, 796
PspPPI RGGWCCY 1 cut(s) 796
RsaI GTAC 2 cut(s) 179, 334
RsaNI GTAC 2 cut(s) 178, 333
RseI CAYNNNNRTG 3 cut(s) 369, 617, 1155
SaqAI TTAA 5 cut(s) 455, 920, 1025, 1133, 1170
SatI GCNGC 3 cut(s) 265, 745, 901
Sau3AI GATC 2 cut(s) 634, 719
Sau96I GGNCC 2 cut(s) 714, 796
SchI GAGTC 1 cut(s) 646
ScrFI CCNGG 1 cut(s) 794
SfaNI GCATC 2 cut(s) 193, 246
SinI GGWCC 2 cut(s) 714, 796
SmiMI CAYNNNNRTG 3 cut(s) 369, 617, 1155
SphI GCATGC 1 cut(s) 401
Sse9I AATT 9 cut(s) 151, 294, 402, 414, 514, 559, 647, 861, 1096
SsiI CCGC 2 cut(s) 264, 814
SspI AATATT 2 cut(s) 184, 387
StyD4I CCNGG 1 cut(s) 792
StyI CCWWGG 1 cut(s) 940
TaaI ACNGT 5 cut(s) 310, 714, 784, 806, 970
TaiI ACGT 1 cut(s) 1077
TaqI TCGA 3 cut(s) 688, 845, 963
TasI AATT 9 cut(s) 151, 294, 402, 414, 514, 559, 647, 861, 1096
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 3 cut(s) 127, 160, 953
Tru1I TTAA 5 cut(s) 455, 920, 1025, 1133, 1170
Tru9I TTAA 5 cut(s) 455, 920, 1025, 1133, 1170
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 2 cut(s) 744, 900
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 8 cut(s) 44, 330, 346, 353, 407, 652, 659, 1039
TspGWI ACGGA 1 cut(s) 1132
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 2 cut(s) 714, 796
XceI RCATGY 1 cut(s) 401
XmiI GTMKAC 2 cut(s) 5, 1124
XmnI GAANNNNTTC 1 cut(s) 35
Zsp2I ATGCAT 2 cut(s) 37, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.