Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000252

Physical Location & Seq

Genomic Coordinates Reverse (-)

55419213 .. 55422066

Gene Structure 2854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG372600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGGATGAAGTTTCTCTCAACACGGAGCCAGCGGGCGAGGATGATGCTGATGGGTATGAGATTGAAGGAGACTGTGCAATGACAGAGTTTGTAAGTCAAACTGGCATTATGCAAGGAGAGAATCCTCTCCCTCCTTCAGCTGGAATGGAGTTTGATTCTTATGAGGATGTATATTACTTCTACAATTGCTATGCTAAGCAACAGGGGTTCGGGGTTAGAGTGAGTAATACGTGGTATAGAAAGAGCAAGGAAAGGTACAGAGGAAAGCTTAGCTGCAGTAGTGCAGGTTTCAAAAAGAAGAGTGAAGCTAATCGCCCAAGGCCAGAGACTAGAACCGGTTGTCCAGCAATGGTGAAGTTCAGGTTAATGGAATCCAACAGGTGGAGAATTATTGAAGTTGAGCTCGAGCACAACCATTTGATCAGTCCAGCAAGTGGCAAATTTTATAAATCACACAAGAGCATAGGTGGTGGAACCAAAAGATCATTGCAGTTGGATAGTGCTGAAGAAGTACAAAAGATAAGGCTATTCCGAACGGTGATTATTGATTCTGAGGGTAACAGAAGCATAGATGTTGACGAAGGAGAATCTGGTAATAAAGTTGACTACTCCAATCAATTGAAGCTTAAAGAAGGAGATGCCAAAGCTGTTCAGAATTTCTTTTCTCGCTTGCAATTGATGGATCCAGACTTCTTTTATGTAGTGGATCTAAATGAGAAAGGATGCTTGAGAAATTTGTTTTGGGCTGATGCGAGGAGTAGGGTTGCTTACACTTATTTCAGTGACATAGTTGCCATTGACACTACATGCTTGGAAAACAAATTTGAAGTCCCATTGGTCTCATTCAGTGGAGTCAATCACCATGGACAATCTGTGCTGCTGGGTTGTGCTTTACTTGCAAGTGGGACTATTGAATCCTATACATGGTTGTTTAGAGCTTGGCTTACATGCATATTGGGACGTCCTCCACAAGCCATCATAACTGACCAATGCAGAACATTACAAACTGCTATTGCTGATGTTTTCCCTAGAGCTTCTCATTGTCTTTGCTTGTCTCAAATAATGCACAAGATTCCAGAAAATTTGGGAGGTTCATTTGAGTATGAGGCAATTAAAGCAGCTTTTATTAGAGCAGTTTACTACTCTTTGAGGGTGGAGGAATTTGAAGCAGCCTGGGAGGATATGGTCCAGCGTCATGGAATTAGAGATCATAAATGGCTTCAAGCATTATATGATGATCGAAAGCGGTGGGTTCCAGTATATTTGAAGGATATATTTTTGGCAGGAATGTTTCCTATGCAACCAAATGAGGTTGTCTCTTCATTTTCTGAAGAATTTCTGGTTAAAAGTACTCCTCTGAAGGAATTTCTAGATAAGTATGATCAAGCTCTGCAGACTCATCATCAGCTGGAAGCCTTGGCAGATTTGGATTCAAGAAACTCAAGTTATATGTTCAAATCGGGAAGTCATTTTGAGTTGCAACTCTCGGAACTGTACACTAATGACATCTTAAGGAAGTTTGGAAAGGAGGTAGAGGGGATGTACTCTTGTTTTAGCACAAGACAATTAAATGTCGATGGGCCAGTCATTACATATACAGTGAAGGAACAAACTGAAGTTGATGGAAATAGCAGAGAGATGAGAGATTATGAGGTTTTGTATAATCCATCTGAGATGGAGGTCCTTTGCGTCTGTGGTATGTTCAACTTGAAAGGATATTTATGCAGGCATGCGCTCTCCATCCTAAACCAAAATGGCATGCAGGAGATTCCAGCTCAATACATTCTTTCACGATGGAGAAAAGATGTTAAGCGCAGTTATGTTTATGATCACAGCTGCAGTGGCATTGATATTAATAACCCAGTTCACAGGTACGATCATCTGTATAAATGCATCGTGCAGGTTGTGGAGGAAGGGAGGAAATCACAAGACCGTTACAAGATTGCATTGCAGGAATTGGATGGGATATTGAACAAGCTTTGTATTACCGAAGATTGTGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

668

Amino Acids

76.66

Weight (kDa)

5.59

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	60 - 141	1.1e-21	FAR1 DNA-binding domain
MULE	PF10551	264 - 357	8.2e-27	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80010
fragaria_vesca	FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica	MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica	Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis	pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis	RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata	RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora	Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa	Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha	Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana	Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AatII	GACGTC	1 cut(s)	964
Acc36I	ACCTGC	2 cut(s)	275, 1891
AccB7I	CCANNNNNTGG	2 cut(s)	381, 434
AciI	CCGC	2 cut(s)	32, 1246
AclWI	GGATC	3 cut(s)	677, 690, 714
AcsI	RAATTY	8 cut(s)	440, 655, 733, 821, 1081, 1160, 1334, 1364
AcuI	CTGAAG	5 cut(s)	120, 525, 1350, 1379, 1635
AcyI	GRCGYC	1 cut(s)	961
AfaI	GTAC	6 cut(s)	257, 513, 1351, 1496, 1544, 1874
AfiI	CCNNNNNNNGG	4 cut(s)	140, 381, 434, 924
AflII	CTTAAG	1 cut(s)	1510
AgeI	ACCGGT	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	1172
AjuI	GAANNNNNNNTTGG	2 cut(s)	724, 756
AloI	GAACNNNNNNTCC	2 cut(s)	325, 357
Alw21I	GWGCWC	2 cut(s)	405, 411
Alw26I	GTCTC	5 cut(s)	63, 320, 844, 1059, 1321
AlwI	GGATC	3 cut(s)	677, 690, 714
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	2 cut(s)	320, 1580
ApeKI	GCWGC	5 cut(s)	273, 877, 1118, 1169, 1836
ApoI	RAATTY	8 cut(s)	440, 655, 733, 821, 1081, 1160, 1334, 1364
ArsI	GACNNNNNNTTYG	2 cut(s)	813, 845
AseI	ATTAAT	1 cut(s)	1854
AsiGI	ACCGGT	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	1335
AspLEI	GCGC	2 cut(s)	1735, 1815
AspS9I	GGNCC	3 cut(s)	1186, 1580, 1681
AsuHPI	GGTGA	3 cut(s)	364, 550, 851
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	2 cut(s)	1186, 1681
BamHI	GGATCC	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	405
Bbv12I	GWGCWC	2 cut(s)	405, 411
BbvI	GCAGC	5 cut(s)	260, 864, 1130, 1181, 1823
BcgI	CGANNNNNNTGC	3 cut(s)	26, 60, 1979
BciT130I	CCWGG	1 cut(s)	1174
BclI	TGATCA	3 cut(s)	420, 1381, 1828
BcoDI	GTCTC	5 cut(s)	63, 320, 844, 1059, 1321
BfaI	CTAG	3 cut(s)	330, 1029, 1370
BfmI	CTRYAG	3 cut(s)	274, 1391, 1837
BfrI	CTTAAG	1 cut(s)	1510
BfuAI	ACCTGC	2 cut(s)	275, 1891
BisI	GCNGC	5 cut(s)	274, 878, 1119, 1170, 1837
BlpI	GCTNAGC	2 cut(s)	195, 269
BlsI	GCNGC	5 cut(s)	275, 879, 1120, 1171, 1838
BmcAI	AGTACT	1 cut(s)	1351
Bme1390I	CCNGG	1 cut(s)	1174
Bme18I	GGWCC	2 cut(s)	1186, 1681
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	3 cut(s)	1186, 1580, 1681
BmiI	GGNNCC	4 cut(s)	27, 475, 684, 1254
BmrFI	CCNGG	1 cut(s)	1174
BmrI	ACTGGG	1 cut(s)	1856
BmsI	GCATC	5 cut(s)	34, 628, 713, 739, 1902
BmuI	ACTGGG	1 cut(s)	1856
BplI	GAGNNNNNCTC	2 cut(s)	1301, 1333
Bpu1102I	GCTNAGC	2 cut(s)	195, 269
BpuEI	CTTGAG	2 cut(s)	748, 1426
BsaAI	YACGTR	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	961
BsaI	GGTCTC	1 cut(s)	844
BsaJI	CCNNGG	4 cut(s)	317, 862, 1173, 1416
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	4 cut(s)	140, 381, 434, 924
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	4 cut(s)	106, 1256, 1583, 1862
Bse3DI	GCAATG	4 cut(s)	84, 354, 485, 1946
BseBI	CCWGG	1 cut(s)	1174
BseDI	CCNNGG	4 cut(s)	317, 862, 1173, 1416
BseGI	GGATG	7 cut(s)	10, 46, 172, 728, 1545, 1740, 1966
BseLI	CCNNNNNNNGG	4 cut(s)	140, 381, 434, 924
BseMI	GCAATG	4 cut(s)	84, 354, 485, 1946
BseMII	CTCAG	2 cut(s)	543, 1662
BseNI	ACTGG	4 cut(s)	106, 1256, 1583, 1862
BseRI	GAGGAG	2 cut(s)	769, 1344
BseXI	GCAGC	5 cut(s)	260, 864, 1130, 1181, 1823
BseYI	CCCAGC	1 cut(s)	880
BsgI	GTGCAG	2 cut(s)	303, 1919
BshFI	GGCC	2 cut(s)	322, 1582
BshTI	ACCGGT	1 cut(s)	335
BsiHKAI	GWGCWC	2 cut(s)	405, 411
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	3 cut(s)	815, 919, 972
BslI	CCNNNNNNNGG	4 cut(s)	140, 381, 434, 924
BsmAI	GTCTC	5 cut(s)	63, 320, 844, 1059, 1321
BsmFI	GGGAC	3 cut(s)	815, 919, 972
BsnI	GGCC	2 cut(s)	322, 1582
Bso31I	GGTCTC	1 cut(s)	844
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	405, 411
Bsp1407I	TGTACA	1 cut(s)	1494
Bsp143I	GATC	9 cut(s)	420, 482, 682, 706, 1207, 1237, 1381, 1828, 1876
Bsp1720I	GCTNAGC	2 cut(s)	195, 269
Bsp19I	CCATGG	1 cut(s)	862
BspACI	CCGC	2 cut(s)	32, 1246
BspANI	GGCC	2 cut(s)	322, 1582
BspCNI	CTCAG	2 cut(s)	544, 1663
BspLI	GGNNCC	4 cut(s)	27, 475, 684, 1254
BspMAI	CTGCAG	3 cut(s)	278, 1395, 1841
BspMI	ACCTGC	2 cut(s)	275, 1891
BspPI	GGATC	3 cut(s)	677, 690, 714
BspTI	CTTAAG	1 cut(s)	1510
BspTNI	GGTCTC	1 cut(s)	844
BsrDI	GCAATG	4 cut(s)	84, 354, 485, 1946
BsrFI	RCCGGY	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	1494
BsrI	ACTGG	4 cut(s)	106, 1256, 1583, 1862
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	4 cut(s)	317, 862, 1173, 1416
BssMI	GATC	9 cut(s)	420, 482, 682, 706, 1207, 1237, 1381, 1828, 1876
BssNI	GRCGYC	1 cut(s)	961
BssT1I	CCWWGG	3 cut(s)	317, 862, 1416
Bst2UI	CCWGG	1 cut(s)	1174
Bst4CI	ACNGT	5 cut(s)	74, 538, 1494, 1600, 1934
Bst6I	CTCTTC	2 cut(s)	293, 1324
BstACI	GRCGYC	1 cut(s)	961
BstAFI	CTTAAG	1 cut(s)	1510
BstAUI	TGTACA	1 cut(s)	1494
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	6 cut(s)	30, 34, 671, 1727, 1731, 1760
BstDEI	CTNAG	4 cut(s)	195, 269, 552, 1671
BstDSI	CCRYGG	1 cut(s)	862
BstF5I	GGATG	7 cut(s)	10, 46, 172, 728, 1545, 1740, 1966
BstHHI	GCGC	2 cut(s)	1735, 1815
BstKTI	GATC	9 cut(s)	423, 485, 685, 709, 1210, 1240, 1384, 1831, 1879
BstMAI	GTCTC	5 cut(s)	63, 320, 844, 1059, 1321
BstMBI	GATC	9 cut(s)	420, 482, 682, 706, 1207, 1237, 1381, 1828, 1876
BstMWI	GCNNNNNNNGC	3 cut(s)	896, 1115, 1842
BstNI	CCWGG	1 cut(s)	1174
BstNSI	RCATGY	4 cut(s)	810, 951, 1733, 1762
BstSCI	CCNGG	1 cut(s)	1172
BstSFI	CTRYAG	3 cut(s)	274, 1391, 1837
BstV1I	GCAGC	5 cut(s)	260, 864, 1130, 1181, 1823
BstX2I	RGATCY	2 cut(s)	682, 706
BstXI	CCANNNNNNTGG	1 cut(s)	1196
BstYI	RGATCY	2 cut(s)	682, 706
BsuRI	GGCC	2 cut(s)	322, 1582
BtgI	CCRYGG	1 cut(s)	862
BtsCI	GGATG	7 cut(s)	10, 46, 172, 728, 1545, 1740, 1966
BtsI	GCAGTG	1 cut(s)	1846
BtsIMutI	CAGTG	4 cut(s)	787, 853, 1605, 1846
BveI	ACCTGC	2 cut(s)	275, 1891
Cac8I	GCNNGC	6 cut(s)	30, 34, 671, 1727, 1731, 1760
CfoI	GCGC	2 cut(s)	1735, 1815
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	3 cut(s)	1186, 1580, 1681
CseI	GACGC	2 cut(s)	1181, 1678
Csp6I	GTAC	6 cut(s)	256, 512, 1350, 1495, 1543, 1873
CspAI	ACCGGT	1 cut(s)	335
CviAII	CATG	7 cut(s)	807, 863, 924, 948, 1196, 1730, 1759
CviQI	GTAC	6 cut(s)	256, 512, 1350, 1495, 1543, 1873
DdeI	CTNAG	4 cut(s)	195, 269, 552, 1671
DpnI	GATC	9 cut(s)	422, 484, 684, 708, 1209, 1239, 1383, 1830, 1878
DpnII	GATC	9 cut(s)	420, 482, 682, 706, 1207, 1237, 1381, 1828, 1876
Eam1104I	CTCTTC	2 cut(s)	293, 1324
EarI	CTCTTC	2 cut(s)	293, 1324
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	3 cut(s)	317, 862, 1416
Eco24I	GRGCYC	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	844
Eco47I	GGWCC	2 cut(s)	1186, 1681
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	5 cut(s)	120, 525, 1350, 1379, 1635
Eco88I	CYCGRG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	1681
EcoRII	CCWGG	1 cut(s)	1172
EcoT14I	CCWWGG	3 cut(s)	317, 862, 1416
EcoT22I	ATGCAT	2 cut(s)	953, 1895
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	3 cut(s)	317, 862, 1416
FaeI	CATG	7 cut(s)	810, 866, 927, 951, 1199, 1733, 1762
FaqI	GGGAC	3 cut(s)	815, 919, 972
FatI	CATG	7 cut(s)	806, 862, 923, 947, 1195, 1729, 1758
FauI	CCCGC	1 cut(s)	25
FbaI	TGATCA	3 cut(s)	420, 1381, 1828
Fnu4HI	GCNGC	5 cut(s)	274, 878, 1119, 1170, 1837
FokI	GGATG	7 cut(s)	17, 53, 179, 735, 1552, 1727, 1973
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	5 cut(s)	274, 878, 1119, 1170, 1837
FspBI	CTAG	3 cut(s)	330, 1029, 1370
GlaI	GCGC	2 cut(s)	1734, 1814
GluI	GCNGC	5 cut(s)	274, 878, 1119, 1170, 1837
GsaI	CCCAGC	1 cut(s)	884
HaeIII	GGCC	2 cut(s)	322, 1582
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	2 cut(s)	1181, 1678
HhaI	GCGC	2 cut(s)	1735, 1815
Hin1I	GRCGYC	1 cut(s)	961
Hin1II	CATG	7 cut(s)	810, 866, 927, 951, 1199, 1733, 1762
Hin6I	GCGC	2 cut(s)	1733, 1813
HinP1I	GCGC	2 cut(s)	1733, 1813
HincII	GTYRAC	2 cut(s)	577, 604
HindII	GTYRAC	2 cut(s)	577, 604
HindIII	AAGCTT	3 cut(s)	266, 623, 1976
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	3 cut(s)	364, 550, 851
Hpy166II	GTNNAC	5 cut(s)	577, 604, 1138, 1497, 1867
Hpy188I	TCNGA	7 cut(s)	533, 553, 654, 1330, 1359, 1489, 1672
Hpy188III	TCNNGA	6 cut(s)	686, 1076, 1370, 1434, 1461, 1791
Hpy8I	GTNNAC	5 cut(s)	577, 604, 1138, 1497, 1867
HpyAV	CCTTC	8 cut(s)	59, 144, 575, 626, 1261, 1354, 1597, 1907
HpyCH4III	ACNGT	5 cut(s)	74, 538, 1494, 1600, 1934
HpyCH4IV	ACGT	2 cut(s)	230, 961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	896, 1115, 1842
HpyF3I	CTNAG	4 cut(s)	195, 269, 552, 1671
HpySE526I	ACGT	2 cut(s)	230, 961
Hsp92I	GRCGYC	1 cut(s)	961
Hsp92II	CATG	7 cut(s)	810, 866, 927, 951, 1199, 1733, 1762
HspAI	GCGC	2 cut(s)	1733, 1813
Ksp22I	TGATCA	3 cut(s)	420, 1381, 1828
Kzo9I	GATC	9 cut(s)	420, 482, 682, 706, 1207, 1237, 1381, 1828, 1876
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	5 cut(s)	260, 864, 1130, 1181, 1823
LweI	GCATC	5 cut(s)	34, 628, 713, 739, 1902
MaeI	CTAG	3 cut(s)	330, 1029, 1370
MaeII	ACGT	2 cut(s)	230, 961
MaeIII	GTNAC	3 cut(s)	557, 782, 1934
MalI	GATC	9 cut(s)	422, 484, 684, 708, 1209, 1239, 1383, 1830, 1878
MboI	GATC	9 cut(s)	420, 482, 682, 706, 1207, 1237, 1381, 1828, 1876
MboII	GAAGA	5 cut(s)	310, 518, 1311, 1343, 2003
MfeI	CAATTG	3 cut(s)	184, 617, 674
MflI	RGATCY	2 cut(s)	682, 706
MhlI	GDGCHC	2 cut(s)	405, 411
MlyI	GAGTC	2 cut(s)	861, 1390
MmeI	TCCRAC	2 cut(s)	399, 474
Mph1103I	ATGCAT	2 cut(s)	953, 1895
MroXI	GAANNNNTTC	1 cut(s)	1335
MseI	TTAA	8 cut(s)	365, 627, 1113, 1344, 1511, 1568, 1809, 1854
MspA1I	CMGCKG	4 cut(s)	32, 140, 1408, 1836
MspCI	CTTAAG	1 cut(s)	1510
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	1174
MunI	CAATTG	3 cut(s)	184, 617, 674
MvaI	CCWGG	1 cut(s)	1174
MwoI	GCNNNNNNNGC	3 cut(s)	896, 1115, 1842
NcoI	CCATGG	1 cut(s)	862
NdeII	GATC	9 cut(s)	420, 482, 682, 706, 1207, 1237, 1381, 1828, 1876
NlaIII	CATG	7 cut(s)	810, 866, 927, 951, 1199, 1733, 1762
NlaIV	GGNNCC	4 cut(s)	27, 475, 684, 1254
NmuCI	GTSAC	1 cut(s)	782
NsiI	ATGCAT	2 cut(s)	953, 1895
NspI	RCATGY	4 cut(s)	810, 951, 1733, 1762
PaeI	GCATGC	2 cut(s)	1733, 1762
PaeR7I	CTCGAG	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	1335
PfeI	GAWTC	9 cut(s)	121, 155, 371, 548, 587, 914, 1072, 1430, 1768
PflMI	CCANNNNNTGG	2 cut(s)	381, 434
PinAI	ACCGGT	1 cut(s)	335
PkrI	GCNGC	5 cut(s)	275, 879, 1120, 1171, 1838
PleI	GAGTC	2 cut(s)	860, 1390
PpsI	GAGTC	2 cut(s)	860, 1390
Ppu21I	YACGTR	1 cut(s)	231
PpuMI	RGGWCCY	1 cut(s)	1681
PshBI	ATTAAT	1 cut(s)	1854
PsiI	TTATAA	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	1681
Psp6I	CCWGG	1 cut(s)	1172
PspFI	CCCAGC	1 cut(s)	880
PspGI	CCWGG	1 cut(s)	1172
PspN4I	GGNNCC	4 cut(s)	27, 475, 684, 1254
PspPI	GGNCC	3 cut(s)	1186, 1580, 1681
PspPPI	RGGWCCY	1 cut(s)	1681
PspXI	VCTCGAGB	1 cut(s)	404
PstI	CTGCAG	3 cut(s)	278, 1395, 1841
PsuI	RGATCY	2 cut(s)	682, 706
PvuII	CAGCTG	3 cut(s)	140, 1408, 1836
RsaI	GTAC	6 cut(s)	257, 513, 1351, 1496, 1544, 1874
RsaNI	GTAC	6 cut(s)	256, 512, 1350, 1495, 1543, 1873
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	8 cut(s)	365, 627, 1113, 1344, 1511, 1568, 1809, 1854
SatI	GCNGC	5 cut(s)	274, 878, 1119, 1170, 1837
Sau3AI	GATC	9 cut(s)	420, 482, 682, 706, 1207, 1237, 1381, 1828, 1876
Sau96I	GGNCC	3 cut(s)	1186, 1580, 1681
ScaI	AGTACT	1 cut(s)	1351
SchI	GAGTC	2 cut(s)	861, 1390
ScrFI	CCNGG	1 cut(s)	1174
SduI	GDGCHC	2 cut(s)	405, 411
SfaNI	GCATC	5 cut(s)	34, 628, 713, 739, 1902
SfcI	CTRYAG	3 cut(s)	274, 1391, 1837
Sfr274I	CTCGAG	1 cut(s)	404
SinI	GGWCC	2 cut(s)	1186, 1681
SlaI	CTCGAG	1 cut(s)	404
SmlI	CTYRAG	4 cut(s)	404, 727, 1441, 1510
SmoI	CTYRAG	4 cut(s)	404, 727, 1441, 1510
SphI	GCATGC	2 cut(s)	1733, 1762
SsiI	CCGC	2 cut(s)	32, 1246
SspMI	CTAG	3 cut(s)	330, 1029, 1370
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	1172
StyI	CCWWGG	3 cut(s)	317, 862, 1416
TaaI	ACNGT	5 cut(s)	74, 538, 1494, 1600, 1934
TaiI	ACGT	2 cut(s)	233, 964
TaqI	TCGA	3 cut(s)	405, 1240, 1575
TatI	WGTACW	4 cut(s)	511, 1349, 1494, 1542
TfiI	GAWTC	9 cut(s)	121, 155, 371, 548, 587, 914, 1072, 1430, 1768
Tru1I	TTAA	8 cut(s)	365, 627, 1113, 1344, 1511, 1568, 1809, 1854
Tru9I	TTAA	8 cut(s)	365, 627, 1113, 1344, 1511, 1568, 1809, 1854
TscAI	CASTG	4 cut(s)	787, 853, 1605, 1846
TseFI	GTSAC	1 cut(s)	782
TseI	GCWGC	5 cut(s)	273, 877, 1118, 1169, 1836
Tsp45I	GTSAC	1 cut(s)	782
TspDTI	ATGAA	3 cut(s)	21, 1083, 1311
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	4 cut(s)	787, 853, 1605, 1846
Van91I	CCANNNNNTGG	2 cut(s)	381, 434
Vha464I	CTTAAG	1 cut(s)	1510
VpaK11BI	GGWCC	2 cut(s)	1186, 1681
VspI	ATTAAT	1 cut(s)	1854
XapI	RAATTY	8 cut(s)	440, 655, 733, 821, 1081, 1160, 1334, 1364
XbaI	TCTAGA	1 cut(s)	1369
XceI	RCATGY	4 cut(s)	810, 951, 1733, 1762
XhoI	CTCGAG	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	1335
XspI	CTAG	3 cut(s)	330, 1029, 1370
ZraI	GACGTC	1 cut(s)	962
ZrmI	AGTACT	1 cut(s)	1351
Zsp2I	ATGCAT	2 cut(s)	953, 1895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.