Rw7G041860

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000252
Physical Location & Seq
Reverse (-)
65444127 .. 65448307
4181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041860.1

Sequence Viewer

Length: 1197 bp
ATGCCATTTGCACCTTTTGTAAGTGTCAATCATCATGGGCAATCAATATTACTAGGATGTGGATTGATTTCTCATAAGGATACATATATAGCAATTGAGATTGTCTTTCCTAATACACGACATAGGTGGTGCTTGTGGCATATAATGAAGAAGGTTCCAGAGAAATTGAAAGGCTACAAAGAGAAATACGAATCTATCAAGTTTTCTTTTCAAAATATTGTTTACGATTCACTAAATTGTGATGAATTTGAAGATCGTTGGAAGATGTTCATTGAAAAGTATAACCTACATAACAATGAATGGTTATTGGGATTATATGAGGAAAGGAGAAGATGGGTACCTAGTTTTGTGAAAGACACTTTCTGGGCAGGCATGTCTACAACTCAGCGTAGTGAGAGCTTGAATGCATTCTTTGATAGGTATGTAAACTCAAAGACTACACTAAAGCAATTTGTGGAGCAATATGAGAATGCTTTACAAGATAAAGTTGAGAAAGAGAATCTTGCAGATTTTCAGTCTTTCAATTCAATGATTATGTGTTTCACAATGTACAATATTGAGAAACAATATCATGATGCTTACACAAATACAAAGTTCAAAGAGTTTCAAAAAGAGTTAAAAGGAAAGATGCATTGCGGCATATCATCATCTGAAAGGAATGAGAAATACATTTTAAAACGATGGACAGCAAGTGTAAAACGAAGTCATAGCAAAGTGAAAATAAGATATGGCAATTGGACTGCCAAGCCTGAAACACAAAGAAATGATAAGATGTGTAATTTGTTTTATGTGGTGGCAGACTTAGCAGATGGCAAAGAAGAAGATTGTAACATGGTGGTGGAGATATTAAATGATTTGAAAATGAAAACTCAAAGTAAAGTTGATTGTGAAAGGAAAGGAGATAATACTGACTTGGTAATTAAGAAGACAAAGCTTGATGGAAAACTTTCAAAGAATGGTTGCAAAGTACTTGATCCATTATCTGTTCAAAGTAAAGGTCGTCCTCCAATCAACCGAAAACAATCTACGACCGAGCAAATTATTCGAAAAAGAAAAGAAAGTGAAGCTGCAAAAATATCTAGTGTTATTGGGGACCCGGTATTCCGACCCGGTCGGAACTTGCATCTCCGGCGACCTCTTCCAGTGAAACCAGCCCAGAACGACTCGTTGCTTGAGACTCATAGGTATGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

398

Amino Acids

46.75

Weight (kDa)

9.34

Isoelectric Point (pI)

59.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 377
AciI CCGC 1 cut(s) 636
AclWI GGATC 1 cut(s) 968
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 3 cut(s) 339, 551, 969
AluBI AGCT 4 cut(s) 399, 934, 1067, 1193
AluI AGCT 4 cut(s) 399, 934, 1067, 1193
Alw26I GTCTC 1 cut(s) 1169
AlwI GGATC 1 cut(s) 968
ApeKI GCWGC 2 cut(s) 1067, 1190
ApoI RAATTY 1 cut(s) 245
ArsI GACNNNNNNTTYG 2 cut(s) 982, 1014
Asp700I GAANNNNTTC 3 cut(s) 266, 407, 946
Asp718I GGTACC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 1093
AsuC2I CCSGG 2 cut(s) 1097, 1110
AsuII TTCGAA 1 cut(s) 1045
AvaII GGWCC 1 cut(s) 1093
BanI GGYRCC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 932
BbvI GCAGC 1 cut(s) 1054
BccI CCATC 4 cut(s) 327, 675, 803, 932
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BciVI GTATCC 1 cut(s) 73
BcnI CCSGG 2 cut(s) 1097, 1110
BcoDI GTCTC 1 cut(s) 1169
BfaI CTAG 3 cut(s) 53, 342, 1080
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 3 cut(s) 637, 1068, 1191
BlsI GCNGC 3 cut(s) 638, 1069, 1192
BmcAI AGTACT 1 cut(s) 969
Bme1390I CCNGG 2 cut(s) 1097, 1110
Bme18I GGWCC 1 cut(s) 1093
BmgT120I GGNCC 1 cut(s) 1093
BmiI GGNNCC 4 cut(s) 156, 339, 1094, 1095
BmrFI CCNGG 2 cut(s) 1097, 1110
BmsI GCATC 3 cut(s) 565, 618, 1132
BpiI GAAGAC 1 cut(s) 932
Bpu14I TTCGAA 1 cut(s) 1045
BpuEI CTTGAG 1 cut(s) 1193
BpuMI CCSGG 2 cut(s) 1097, 1110
Bse1I ACTGG 1 cut(s) 1142
Bse3DI GCAATG 1 cut(s) 631
BseGI GGATG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 1142
BseXI GCAGC 1 cut(s) 1054
Bsh1285I CGRYCG 2 cut(s) 1032, 1114
BshNI GGYRCC 1 cut(s) 337
BsiEI CGRYCG 2 cut(s) 1032, 1114
BsiSI CCGG 3 cut(s) 1097, 1110, 1129
BslFI GGGAC 1 cut(s) 1106
BsmAI GTCTC 1 cut(s) 1169
BsmFI GGGAC 1 cut(s) 1106
BsmI GAATGC 3 cut(s) 407, 409, 475
Bsp119I TTCGAA 1 cut(s) 1045
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 2 cut(s) 253, 973
BspACI CCGC 1 cut(s) 636
BspCNI CTCAG 1 cut(s) 397
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 4 cut(s) 156, 339, 1094, 1095
BspPI GGATC 1 cut(s) 968
BspT104I TTCGAA 1 cut(s) 1045
BspT107I GGYRCC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 631
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 1 cut(s) 1142
BssMI GATC 2 cut(s) 253, 973
Bst6I CTCTTC 1 cut(s) 1143
BstAUI TGTACA 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 1045
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 384, 802
BstF5I GGATG 1 cut(s) 62
BstKTI GATC 2 cut(s) 256, 976
BstMAI GTCTC 1 cut(s) 1169
BstMBI GATC 2 cut(s) 253, 973
BstMCI CGRYCG 2 cut(s) 1032, 1114
BstMWI GCNNNNNNNGC 2 cut(s) 803, 1129
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 1095, 1108
BstV1I GCAGC 1 cut(s) 1054
BstV2I GAAGAC 1 cut(s) 932
BsuI GTATCC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 1149
Cac8I GCNNGC 1 cut(s) 370
CciI TCATGA 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 1093
Csp6I GTAC 3 cut(s) 338, 550, 968
CviAII CATG 4 cut(s) 35, 373, 572, 832
CviJI RGCY 7 cut(s) 174, 399, 748, 934, 1067, 1154, 1193
CviKI_1 RGCY 7 cut(s) 174, 399, 748, 934, 1067, 1154, 1193
CviQI GTAC 3 cut(s) 338, 550, 968
DdeI CTNAG 2 cut(s) 384, 802
DpnI GATC 2 cut(s) 255, 975
DpnII GATC 2 cut(s) 253, 973
DraI TTTAAA 1 cut(s) 675
Eam1104I CTCTTC 1 cut(s) 1143
EarI CTCTTC 1 cut(s) 1143
Eco47I GGWCC 1 cut(s) 1093
EcoO109I RGGNCCY 1 cut(s) 1093
EcoT22I ATGCAT 2 cut(s) 409, 633
FaeI CATG 4 cut(s) 38, 376, 575, 835
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 1 cut(s) 1106
FatI CATG 4 cut(s) 34, 372, 571, 831
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 3 cut(s) 637, 1068, 1191
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 637, 1068, 1191
FspBI CTAG 3 cut(s) 53, 342, 1080
GluI GCNGC 3 cut(s) 637, 1068, 1191
HapII CCGG 3 cut(s) 1097, 1110, 1129
Hin1II CATG 4 cut(s) 38, 376, 575, 835
HindIII AAGCTT 1 cut(s) 932
HinfI GANTC 5 cut(s) 191, 227, 499, 1163, 1177
HpaII CCGG 3 cut(s) 1097, 1110, 1129
Hpy166II GTNNAC 3 cut(s) 223, 378, 427
Hpy188I TCNGA 3 cut(s) 652, 1106, 1116
Hpy188III TCNNGA 2 cut(s) 158, 572
Hpy8I GTNNAC 3 cut(s) 223, 378, 427
HpyAV CCTTC 1 cut(s) 145
HpyCH4V TGCA 8 cut(s) 11, 407, 506, 631, 963, 1070, 1123, 1190
HpyF10VI GCNNNNNNNGC 2 cut(s) 803, 1129
HpyF3I CTNAG 2 cut(s) 384, 802
Hsp92II CATG 4 cut(s) 38, 376, 575, 835
KflI GGGWCCC 1 cut(s) 1093
KpnI GGTACC 1 cut(s) 341
Kzo9I GATC 2 cut(s) 253, 973
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 1 cut(s) 1054
LweI GCATC 3 cut(s) 565, 618, 1132
MaeI CTAG 3 cut(s) 53, 342, 1080
MaeIII GTNAC 1 cut(s) 827
MalI GATC 2 cut(s) 255, 975
MboI GATC 2 cut(s) 253, 973
MboII GAAGA 8 cut(s) 160, 263, 274, 342, 830, 833, 937, 1130
MfeI CAATTG 2 cut(s) 93, 733
MlyI GAGTC 2 cut(s) 1157, 1171
MmeI TCCRAC 3 cut(s) 239, 1094, 1129
MnlI CCTC 3 cut(s) 313, 1014, 1146
Mph1103I ATGCAT 2 cut(s) 409, 633
MroXI GAANNNNTTC 3 cut(s) 266, 407, 946
MseI TTAA 5 cut(s) 617, 674, 848, 921, 1195
MslI CAYNNNNRTG 3 cut(s) 294, 836, 1185
MspI CCGG 3 cut(s) 1097, 1110, 1129
MspR9I CCNGG 2 cut(s) 1097, 1110
MunI CAATTG 2 cut(s) 93, 733
Mva1269I GAATGC 3 cut(s) 407, 409, 475
MwoI GCNNNNNNNGC 2 cut(s) 803, 1129
NciI CCSGG 2 cut(s) 1097, 1110
NdeII GATC 2 cut(s) 253, 973
NlaIII CATG 4 cut(s) 38, 376, 575, 835
NlaIV GGNNCC 4 cut(s) 156, 339, 1094, 1095
NsiI ATGCAT 2 cut(s) 409, 633
NspI RCATGY 1 cut(s) 376
NspV TTCGAA 1 cut(s) 1045
PagI TCATGA 1 cut(s) 571
PctI GAATGC 3 cut(s) 407, 409, 475
PdmI GAANNNNTTC 3 cut(s) 266, 407, 946
PfeI GAWTC 3 cut(s) 191, 227, 499
PflFI GACNNNGTC 1 cut(s) 1110
PkrI GCNGC 3 cut(s) 638, 1069, 1192
PleI GAGTC 2 cut(s) 1157, 1171
PpsI GAGTC 2 cut(s) 1157, 1171
PpuMI RGGWCCY 1 cut(s) 1093
Psp5II RGGWCCY 1 cut(s) 1093
PspN4I GGNNCC 4 cut(s) 156, 339, 1094, 1095
PspPI GGNCC 1 cut(s) 1093
PspPPI RGGWCCY 1 cut(s) 1093
PsyI GACNNNGTC 1 cut(s) 1110
RsaI GTAC 3 cut(s) 339, 551, 969
RsaNI GTAC 3 cut(s) 338, 550, 968
RseI CAYNNNNRTG 3 cut(s) 294, 836, 1185
SaqAI TTAA 5 cut(s) 617, 674, 848, 921, 1195
SatI GCNGC 3 cut(s) 637, 1068, 1191
Sau3AI GATC 2 cut(s) 253, 973
Sau96I GGNCC 1 cut(s) 1093
ScaI AGTACT 1 cut(s) 969
SchI GAGTC 2 cut(s) 1157, 1171
ScrFI CCNGG 2 cut(s) 1097, 1110
SfaNI GCATC 3 cut(s) 565, 618, 1132
SfuI TTCGAA 1 cut(s) 1045
SinI GGWCC 1 cut(s) 1093
SmiMI CAYNNNNRTG 3 cut(s) 294, 836, 1185
SmlI CTYRAG 1 cut(s) 1172
SmoI CTYRAG 1 cut(s) 1172
SsiI CCGC 1 cut(s) 636
SspI AATATT 3 cut(s) 48, 217, 556
SspMI CTAG 3 cut(s) 53, 342, 1080
StyD4I CCNGG 2 cut(s) 1095, 1108
TaqI TCGA 1 cut(s) 1045
TaqII GACCGA 1 cut(s) 1046
TatI WGTACW 2 cut(s) 549, 967
TauI GCSGC 1 cut(s) 639
TfiI GAWTC 3 cut(s) 191, 227, 499
Tru1I TTAA 5 cut(s) 617, 674, 848, 921, 1195
Tru9I TTAA 5 cut(s) 617, 674, 848, 921, 1195
TscAI CASTG 1 cut(s) 1149
TseI GCWGC 2 cut(s) 1067, 1190
TspDTI ATGAA 5 cut(s) 161, 258, 259, 312, 878
TspRI CASTG 1 cut(s) 1149
Tth111I GACNNNGTC 1 cut(s) 1110
VpaK11BI GGWCC 1 cut(s) 1093
XapI RAATTY 1 cut(s) 245
XceI RCATGY 1 cut(s) 376
XmiI GTMKAC 1 cut(s) 377
XmnI GAANNNNTTC 3 cut(s) 266, 407, 946
XspI CTAG 3 cut(s) 53, 342, 1080
ZrmI AGTACT 1 cut(s) 969
Zsp2I ATGCAT 2 cut(s) 409, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.