Rmu_sc0005198.1_g000005

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005198.1
OG0000252
Physical Location & Seq
Forward (+)
17879 .. 19884
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005198.1_g000005.1.cds

Sequence Viewer

Length: 1068 bp
atgtacaatattgagaaacaatatcatgatgcttacagaaatgcaaagttcaaagagttccagaaagagttagaaggaaagacgcattgtggcatatcatcatttgaaaggaatggtacaattatagatatcactgtggatgaagatgttaagatcgatacagaaatgagatgtgtcccattcatagttcattttaatgaggacaggtgtgaggtaaaatgtgtgtgtcgtctatttgaattcagaggaatattatgtcggcatgctattgtggttctaattcataaaaatatggccagcattccagagaaatacattttaaaacgatggacagcaagtgtaaaaagaagtcatagcaaagtgaaaataagctatggcaattcgactgccaagcctgaagcacaaagaaatgataagatgtgtaatttgttttatgaggtagcagacttagcagatgacaaagaagaagattgtaacatggtaatggggatattaaatgatctgaaaatgaagctgactcaaagtaaagttgattgcgaaaggaaaggagataatattgagttggttgagaagacaaagcttgatggaaaacttttcgagaatggttgtgaaatacttgatccattatttgttcgaagtaaaggtcgtcctccagtcaaccgaaaacaatctacgaccgagcaaattattcgaaaaagaaaagaaactgaagctgcaaaaatatctaatgacaaaaataaattccaggtaaatttgtcatcagggttgattcctataccaccaatttcaagtgagtggcacatgcacaatgatgaaactacacaatacttgtaccttcgggcacctccaacagttgtagtcaaaagccaaaatggctttggcttttcaagaaggcatctccaaccattcacttaccttagccattttgacttattagtcaaaagtggagtcattttgacgaaactcgctggaacaaaagccattttggctgaggacggaagatggtgggccccagctgcacatgggattgattttgcagatagaagcaacgcgcaaactggggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

355

Amino Acids

40.71

Weight (kDa)

8.66

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 935
AccB1I GGYRCC 1 cut(s) 841
AccII CGCG 1 cut(s) 1052
AclWI GGATC 1 cut(s) 614
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 3 cut(s) 239, 740, 751
AcuI CTGAAG 2 cut(s) 417, 729
AfaI GTAC 3 cut(s) 5, 118, 833
AgsI TTSAA 5 cut(s) 52, 107, 239, 789, 888
AjnI CCWGG 1 cut(s) 744
AluBI AGCT 5 cut(s) 372, 514, 580, 713, 1016
AluI AGCT 5 cut(s) 372, 514, 580, 713, 1016
AlwI GGATC 1 cut(s) 614
AoxI GGCC 2 cut(s) 294, 1008
ApaI GGGCCC 1 cut(s) 1012
ApeKI GCWGC 2 cut(s) 713, 1016
ApoI RAATTY 3 cut(s) 239, 740, 751
ArsI GACNNNNNNTTYG 4 cut(s) 628, 660, 933, 965
AspLEI GCGC 1 cut(s) 1054
AspS9I GGNCC 2 cut(s) 1008, 1009
AsuII TTCGAA 2 cut(s) 634, 691
BaeGI GKGCMC 2 cut(s) 844, 1012
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 841
BanII GRGCYC 1 cut(s) 1012
BbsI GAAGAC 1 cut(s) 578
BbvCI CCTCAGC 1 cut(s) 990
BbvI GCAGC 2 cut(s) 700, 1003
BccI CCATC 3 cut(s) 321, 578, 996
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 1 cut(s) 746
BglI GCCNNNNNGGC 2 cut(s) 873, 986
BisI GCNGC 2 cut(s) 714, 1017
BlsI GCNGC 2 cut(s) 715, 1018
Bme1390I CCNGG 1 cut(s) 746
BmgT120I GGNCC 2 cut(s) 1008, 1009
BmiI GGNNCC 3 cut(s) 843, 1010, 1011
BmrFI CCNGG 1 cut(s) 746
BmrI ACTGGG 1 cut(s) 1068
BmsI GCATC 2 cut(s) 19, 904
BmuI ACTGGG 1 cut(s) 1068
BpiI GAAGAC 1 cut(s) 578
BpmI CTGGAG 1 cut(s) 636
Bpu10I CCTNAGC 2 cut(s) 917, 990
Bpu14I TTCGAA 2 cut(s) 634, 691
Bsa29I ATCGAT 1 cut(s) 156
Bse1I ACTGG 2 cut(s) 653, 1063
BseBI CCWGG 1 cut(s) 746
BseCI ATCGAT 1 cut(s) 156
BseGI GGATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 981
BseNI ACTGG 2 cut(s) 653, 1063
BseSI GKGCMC 2 cut(s) 844, 1012
BseXI GCAGC 2 cut(s) 700, 1003
BseYI CCCAGC 1 cut(s) 1012
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 1 cut(s) 1052
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 2 cut(s) 296, 1010
BshNI GGYRCC 1 cut(s) 841
BshVI ATCGAT 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 678
BslFI GGGAC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 300
BsnI GGCC 2 cut(s) 296, 1010
Bsp119I TTCGAA 2 cut(s) 634, 691
Bsp120I GGGCCC 1 cut(s) 1008
Bsp1286I GDGCHC 2 cut(s) 844, 1012
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 153, 499, 619
BspANI GGCC 2 cut(s) 296, 1010
BspCNI CTCAG 1 cut(s) 982
BspDI ATCGAT 1 cut(s) 156
BspFNI CGCG 1 cut(s) 1052
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 843, 1010, 1011
BspPI GGATC 1 cut(s) 614
BspT104I TTCGAA 2 cut(s) 634, 691
BspT107I GGYRCC 1 cut(s) 841
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 653, 1063
BssMI GATC 3 cut(s) 153, 499, 619
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 2 cut(s) 136, 853
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 2 cut(s) 634, 691
BstC8I GCNNGC 2 cut(s) 264, 298
BstDEI CTNAG 3 cut(s) 448, 917, 990
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 1052
BstHHI GCGC 1 cut(s) 1054
BstKTI GATC 3 cut(s) 156, 502, 622
BstMBI GATC 3 cut(s) 153, 499, 619
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 4 cut(s) 449, 873, 986, 1016
BstNI CCWGG 1 cut(s) 746
BstNSI RCATGY 2 cut(s) 266, 805
BstSCI CCNGG 1 cut(s) 744
BstSLI GKGCMC 2 cut(s) 844, 1012
BstUI CGCG 1 cut(s) 1052
BstV1I GCAGC 2 cut(s) 700, 1003
BstV2I GAAGAC 1 cut(s) 578
Bsu15I ATCGAT 1 cut(s) 156
BsuRI GGCC 2 cut(s) 296, 1010
BsuTUI ATCGAT 1 cut(s) 156
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 264, 298
CciI TCATGA 1 cut(s) 25
CfoI GCGC 1 cut(s) 1054
Cfr13I GGNCC 2 cut(s) 1008, 1009
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 1 cut(s) 91
Csp6I GTAC 3 cut(s) 4, 117, 832
CviAII CATG 5 cut(s) 26, 263, 478, 802, 1022
CviQI GTAC 3 cut(s) 4, 117, 832
DdeI CTNAG 3 cut(s) 448, 917, 990
DpnI GATC 3 cut(s) 155, 501, 621
DpnII GATC 3 cut(s) 153, 499, 619
DraI TTTAAA 1 cut(s) 321
DrdI GACNNNNNNGTC 1 cut(s) 935
DseDI GACNNNNNNGTC 1 cut(s) 935
EaeI YGGCCR 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 1012
Eco32I GATATC 1 cut(s) 130
Eco57I CTGAAG 2 cut(s) 417, 729
EcoO109I RGGNCCY 1 cut(s) 1009
EcoRI GAATTC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 744
EcoRV GATATC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 1012
FaeI CATG 5 cut(s) 29, 266, 481, 805, 1025
FaqI GGGAC 1 cut(s) 161
FatI CATG 5 cut(s) 25, 262, 477, 801, 1021
Fnu4HI GCNGC 2 cut(s) 714, 1017
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 1012
Fsp4HI GCNGC 2 cut(s) 714, 1017
GlaI GCGC 1 cut(s) 1053
GluI GCNGC 2 cut(s) 714, 1017
GsaI CCCAGC 1 cut(s) 1016
GsuI CTGGAG 1 cut(s) 636
HaeIII GGCC 2 cut(s) 296, 1010
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 1054
Hin1II CATG 5 cut(s) 29, 266, 481, 805, 1025
Hin6I GCGC 1 cut(s) 1052
HinP1I GCGC 1 cut(s) 1052
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 3 cut(s) 517, 769, 948
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 2 cut(s) 245, 504
Hpy188III TCNNGA 5 cut(s) 26, 61, 305, 598, 888
Hpy8I GTNNAC 1 cut(s) 658
HpyAV CCTTC 3 cut(s) 68, 845, 885
HpyCH4III ACNGT 2 cut(s) 136, 853
HpyCH4V TGCA 5 cut(s) 44, 716, 805, 1019, 1037
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 873, 986, 1016
HpyF3I CTNAG 3 cut(s) 448, 917, 990
Hsp92II CATG 5 cut(s) 29, 266, 481, 805, 1025
HspAI GCGC 1 cut(s) 1052
Kzo9I GATC 3 cut(s) 153, 499, 619
Lsp1109I GCAGC 2 cut(s) 700, 1003
LweI GCATC 2 cut(s) 19, 904
MaeIII GTNAC 1 cut(s) 473
MalI GATC 3 cut(s) 155, 501, 621
MboI GATC 3 cut(s) 153, 499, 619
MboII GAAGA 5 cut(s) 155, 476, 479, 583, 1011
MhlI GDGCHC 2 cut(s) 844, 1012
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 9 cut(s) 120, 239, 279, 379, 424, 684, 740, 751, 783
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 2 cut(s) 511, 957
MmeI TCCRAC 2 cut(s) 872, 925
MnlI CCTC 7 cut(s) 193, 205, 239, 430, 660, 855, 985
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 4 cut(s) 150, 195, 320, 494
MslI CAYNNNNRTG 3 cut(s) 195, 482, 810
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 1016
MspR9I CCNGG 1 cut(s) 746
Mva1269I GAATGC 1 cut(s) 300
MvaI CCWGG 1 cut(s) 746
MvnI CGCG 1 cut(s) 1052
MwoI GCNNNNNNNGC 4 cut(s) 449, 873, 986, 1016
NdeII GATC 3 cut(s) 153, 499, 619
NlaIII CATG 5 cut(s) 29, 266, 481, 805, 1025
NlaIV GGNNCC 3 cut(s) 843, 1010, 1011
NspI RCATGY 2 cut(s) 266, 805
NspV TTCGAA 2 cut(s) 634, 691
PaeI GCATGC 1 cut(s) 266
PagI TCATGA 1 cut(s) 25
PctI GAATGC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 769
PkrI GCNGC 2 cut(s) 715, 1018
PleI GAGTC 2 cut(s) 511, 956
PpsI GAGTC 2 cut(s) 511, 956
Psp6I CCWGG 1 cut(s) 744
PspFI CCCAGC 1 cut(s) 1012
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 3 cut(s) 843, 1010, 1011
PspOMI GGGCCC 1 cut(s) 1008
PspPI GGNCC 2 cut(s) 1008, 1009
PvuII CAGCTG 1 cut(s) 1016
RsaI GTAC 3 cut(s) 5, 118, 833
RsaNI GTAC 3 cut(s) 4, 117, 832
RseI CAYNNNNRTG 3 cut(s) 195, 482, 810
SaqAI TTAA 4 cut(s) 150, 195, 320, 494
SatI GCNGC 2 cut(s) 714, 1017
Sau3AI GATC 3 cut(s) 153, 499, 619
Sau96I GGNCC 2 cut(s) 1008, 1009
SchI GAGTC 2 cut(s) 511, 957
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 2 cut(s) 844, 1012
SfaNI GCATC 2 cut(s) 19, 904
SfuI TTCGAA 2 cut(s) 634, 691
SmiMI CAYNNNNRTG 3 cut(s) 195, 482, 810
SphI GCATGC 1 cut(s) 266
Sse9I AATT 9 cut(s) 120, 239, 279, 379, 424, 684, 740, 751, 783
SspI AATATT 3 cut(s) 10, 252, 556
StyD4I CCNGG 1 cut(s) 744
TaaI ACNGT 2 cut(s) 136, 853
TaqI TCGA 5 cut(s) 156, 383, 597, 634, 691
TaqII GACCGA 1 cut(s) 692
TasI AATT 9 cut(s) 120, 239, 279, 379, 424, 684, 740, 751, 783
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 769
Tru1I TTAA 4 cut(s) 150, 195, 320, 494
Tru9I TTAA 4 cut(s) 150, 195, 320, 494
TscAI CASTG 1 cut(s) 139
TseI GCWGC 2 cut(s) 713, 1016
TspDTI ATGAA 6 cut(s) 156, 172, 179, 272, 524, 828
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 1 cut(s) 139
XapI RAATTY 3 cut(s) 239, 740, 751
XceI RCATGY 2 cut(s) 266, 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.