Rh4BG117500

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000252
Physical Location & Seq
Forward (+)
19773823 .. 19774717
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG117500.1

Sequence Viewer

Length: 699 bp
ATGATTCCATATAAATATATCATGAGAAGATGGAGGAAGGATGTGAAGAGATGCCACACAAGGGTTAAAATTAGTTATGGCAGATGGGATGCTAGACCTGAATCACAAAGACTTGACCAGCTGCAGAAGAATTTTGATGACATTAAGGAGCTAGCGTACGATTCTGAAGATAAGTGCATGATTGTTATGACTTGTTTGCATAACTTAAAGGATGAACTATCCAAACATGAGTCCAAGAACACGGGTGCTAGTGGTGGTGCTGAACCAATTCCTGGCTCACCTATCAATAGAAATGGGAGTGTCGACGTTGATGGTATTTCAAATCCAAGTCAACAAATACTTACTCCATTGGTAAATAAGAGAAAAGGTCTCCCACCATCTAAAAGGAAGGTATCTAAGGTAGAGGAAGAGGTAAAAAAGAAACAGAAAAGAGAACAAAAGAACAAATGTGGTGGGAACAGTAGTAATGAAGAAGTAGGAGTGAAGGGGTCAAAATCAAGAGGTCGCCCGCCATTGAAAAAGACTGAATCTAAGAAAGAGCAAGAGGTCAAAAACAAACAAATTAGAAGAAATAATGTTTCATCCAATAAAAAGCCTAATCATGAAGGAGAAGGATTGAAGGTTTTATCACCCTCACAAAGTGATGTTAATCCAAAAAGAGTTCGTATACCGTCCAAAAGATTGTTGGAAACAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

232

Amino Acids

26.43

Weight (kDa)

10.01

Isoelectric Point (pI)

65.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 272
AccI GTMKAC 2 cut(s) 303, 667
AciI CCGC 1 cut(s) 509
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 641
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 61, 272
AgsI TTSAA 3 cut(s) 321, 517, 619
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 2 cut(s) 121, 151
AluI AGCT 2 cut(s) 121, 151
Alw26I GTCTC 1 cut(s) 374
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 130
Asp700I GAANNNNTTC 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 270, 621
AsuNHI GCTAGC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 108
BccI CCATC 4 cut(s) 24, 78, 305, 385
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 3 cut(s) 93, 152, 249
BfmI CTRYAG 1 cut(s) 122
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 2 cut(s) 41, 79
BmtI GCTAGC 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 648
BsaI GGTCTC 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 272
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 1 cut(s) 273
BseGI GGATG 4 cut(s) 46, 94, 217, 581
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 2 cut(s) 61, 272
BseXI GCAGC 1 cut(s) 108
BsiWI CGTACG 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 61, 272
BsmAI GTCTC 1 cut(s) 374
Bso31I GGTCTC 1 cut(s) 374
BspACI CCGC 1 cut(s) 509
BspHI TCATGA 2 cut(s) 21, 601
BspMAI CTGCAG 1 cut(s) 126
BspOI GCTAGC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 374
BssNAI GTATAC 1 cut(s) 668
Bst1107I GTATAC 1 cut(s) 668
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 461, 672
Bst6I CTCTTC 2 cut(s) 41, 402
BstC8I GCNNGC 2 cut(s) 153, 509
BstDEI CTNAG 2 cut(s) 396, 531
BstF5I GGATG 4 cut(s) 46, 94, 217, 581
BstMAI GTCTC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 108
BstZ17I GTATAC 1 cut(s) 668
BtsCI GGATG 4 cut(s) 46, 94, 217, 581
Cac8I GCNNGC 2 cut(s) 153, 509
CciI TCATGA 2 cut(s) 21, 601
Csp6I GTAC 1 cut(s) 157
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 4 cut(s) 22, 178, 227, 602
CviJI RGCY 4 cut(s) 121, 151, 276, 595
CviKI_1 RGCY 4 cut(s) 121, 151, 276, 595
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 396, 531
DraIII CACNNNGTG 1 cut(s) 641
Eam1104I CTCTTC 2 cut(s) 41, 402
EarI CTCTTC 2 cut(s) 41, 402
Eco31I GGTCTC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 4 cut(s) 25, 181, 230, 605
FatI CATG 4 cut(s) 21, 177, 226, 601
FauI CCCGC 1 cut(s) 516
FblI GTMKAC 2 cut(s) 303, 667
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 4 cut(s) 53, 101, 224, 568
Fsp4HI GCNGC 1 cut(s) 122
FspBI CTAG 3 cut(s) 93, 152, 249
GluI GCNGC 1 cut(s) 122
Hin1II CATG 4 cut(s) 25, 181, 230, 605
HincII GTYRAC 2 cut(s) 304, 332
HindII GTYRAC 2 cut(s) 304, 332
HinfI GANTC 5 cut(s) 4, 101, 161, 230, 527
HphI GGTGA 2 cut(s) 270, 621
Hpy166II GTNNAC 3 cut(s) 304, 332, 668
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 3 cut(s) 22, 498, 602
Hpy8I GTNNAC 3 cut(s) 304, 332, 668
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 6 cut(s) 31, 382, 478, 599, 605, 613
HpyCH4III ACNGT 2 cut(s) 461, 672
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 124, 177, 199
HpyF3I CTNAG 2 cut(s) 396, 531
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 4 cut(s) 25, 181, 230, 605
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 4 cut(s) 111, 131, 258, 285
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 2 cut(s) 41, 79
MaeI CTAG 3 cut(s) 93, 152, 249
MaeII ACGT 1 cut(s) 306
MboII GAAGA 7 cut(s) 39, 58, 139, 179, 419, 482, 579
MluCI AATT 5 cut(s) 69, 130, 267, 561, 693
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 666
MnlI CCTC 6 cut(s) 27, 397, 403, 494, 538, 643
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 5 cut(s) 66, 144, 206, 648, 697
MspA1I CMGCKG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
NheI GCTAGC 1 cut(s) 151
NlaIII CATG 4 cut(s) 25, 181, 230, 605
PagI TCATGA 2 cut(s) 21, 601
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 4 cut(s) 4, 101, 161, 527
Pfl23II CGTACG 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 1 cut(s) 123
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspLI CGTACG 1 cut(s) 156
PstI CTGCAG 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 121
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 5 cut(s) 66, 144, 206, 648, 697
SatI GCNGC 1 cut(s) 122
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 273
SfaNI GCATC 2 cut(s) 41, 79
SfcI CTRYAG 1 cut(s) 122
Sse9I AATT 5 cut(s) 69, 130, 267, 561, 693
SsiI CCGC 1 cut(s) 509
SspMI CTAG 3 cut(s) 93, 152, 249
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 461, 672
TaiI ACGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 303
TasI AATT 5 cut(s) 69, 130, 267, 561, 693
TfiI GAWTC 4 cut(s) 4, 101, 161, 527
Tru1I TTAA 5 cut(s) 66, 144, 206, 648, 697
Tru9I TTAA 5 cut(s) 66, 144, 206, 648, 697
TseI GCWGC 1 cut(s) 121
TspDTI ATGAA 4 cut(s) 228, 483, 570, 618
Van91I CCANNNNNTGG 1 cut(s) 272
XapI RAATTY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
XmiI GTMKAC 2 cut(s) 303, 667
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 3 cut(s) 93, 152, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.