Rh6DG233500

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000252
Physical Location & Seq
Forward (+)
41592786 .. 41593247
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG233500.1

Sequence Viewer

Length: 462 bp
ATGGAAAGTGTTGAGAATGAAATGGATACTGCATATGTGGAAGAAAATATGGACAGTGGGGATGAAGTGGAAACTGAGAGAAGTAATGTGGAAATTGATATCGAAACTACTGAGAAAGAAACAGTGAAAGAAAGGGTAAAAGTGCCAGAGATTGGACTAGTGTTTGATTCAATTGATGAGCTAGAGAAGTATTGTAAATCCTATGGAAAAGGAATGGGGTTTAAAGTTTGTAAAAGGACCTCAAGAAGAGGAGATGATGGGGAATTGAAGTACATAATATTCACATGTTCACGTTTTGGCAAGCCTAGTAGCAAGTCAAGACATGCATTTAAATTGCGATCAGTTGCAGAATCAGATTGCAAGGCTAAGCTCAATGCAAATTTACTCCAAGATGGAAAATGGTTAGTGTCCTCCATTGTTCTTGAACATAATCATGATCTTAGTACTCCAGGCAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

153

Amino Acids

17.35

Weight (kDa)

5.36

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 64 - 148 8.9e-16 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AcsI RAATTY 1 cut(s) 379
AfaI GTAC 2 cut(s) 272, 445
AfiI CCNNNNNNNGG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 3 cut(s) 171, 268, 425
AhlI ACTAGT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 2 cut(s) 181, 370
AluI AGCT 2 cut(s) 181, 370
ApoI RAATTY 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 237
AvaII GGWCC 1 cut(s) 237
BccI CCATC 2 cut(s) 251, 386
BciT130I CCWGG 1 cut(s) 450
BciVI GTATCC 1 cut(s) 19
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 3 cut(s) 158, 182, 306
BfuI GTATCC 1 cut(s) 19
BlpI GCTNAGC 1 cut(s) 366
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 450
BpmI CTGGAG 1 cut(s) 432
Bpu1102I GCTNAGC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 450
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 2 cut(s) 66, 102
BseRI GAGGAG 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 152
Bsp143I GATC 2 cut(s) 338, 436
Bsp1720I GCTNAGC 1 cut(s) 366
BspCNI CTCAG 2 cut(s) 67, 103
BspHI TCATGA 1 cut(s) 433
BssMI GATC 2 cut(s) 338, 436
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 56, 124
Bst6I CTCTTC 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 302
BstDEI CTNAG 4 cut(s) 75, 111, 366, 440
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 2 cut(s) 341, 439
BstMBI GATC 2 cut(s) 338, 436
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 2 cut(s) 288, 326
BstSCI CCNGG 1 cut(s) 448
BsuI GTATCC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 61, 129
Cac8I GCNNGC 1 cut(s) 302
CciI TCATGA 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 237
Csp6I GTAC 2 cut(s) 271, 444
CviAII CATG 3 cut(s) 285, 323, 434
CviJI RGCY 4 cut(s) 181, 304, 365, 370
CviKI_1 RGCY 4 cut(s) 181, 304, 365, 370
CviQI GTAC 2 cut(s) 271, 444
DdeI CTNAG 4 cut(s) 75, 111, 366, 440
DpnI GATC 2 cut(s) 340, 438
DpnII GATC 2 cut(s) 338, 436
DraI TTTAAA 2 cut(s) 223, 331
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 448
EcoRV GATATC 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 328
FaeI CATG 3 cut(s) 288, 326, 437
FaiI YATR 9 cut(s) 34, 36, 50, 204, 275, 286, 324, 429, 435
FatI CATG 3 cut(s) 284, 322, 433
FauNDI CATATG 1 cut(s) 34
FokI GGATG 1 cut(s) 74
FspBI CTAG 3 cut(s) 158, 182, 306
GsuI CTGGAG 1 cut(s) 432
Hin1II CATG 3 cut(s) 288, 326, 437
HinfI GANTC 2 cut(s) 167, 350
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 4 cut(s) 243, 318, 422, 434
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 56, 124
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 5 cut(s) 32, 326, 347, 360, 377
HpyF3I CTNAG 4 cut(s) 75, 111, 366, 440
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 3 cut(s) 288, 326, 437
Kzo9I GATC 2 cut(s) 338, 436
LpnPI CCDG 2 cut(s) 159, 435
MaeI CTAG 3 cut(s) 158, 182, 306
MaeII ACGT 1 cut(s) 292
MalI GATC 2 cut(s) 340, 438
MboI GATC 2 cut(s) 338, 436
MboII GAAGA 2 cut(s) 53, 258
MfeI CAATTG 1 cut(s) 171
MluCI AATT 5 cut(s) 93, 171, 263, 332, 379
MnlI CCTC 3 cut(s) 242, 250, 421
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 2 cut(s) 222, 330
MslI CAYNNNNRTG 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 450
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 450
NdeI CATATG 1 cut(s) 34
NdeII GATC 2 cut(s) 338, 436
NlaIII CATG 3 cut(s) 288, 326, 437
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 2 cut(s) 288, 326
PagI TCATGA 1 cut(s) 433
PciI ACATGT 1 cut(s) 284
PfeI GAWTC 2 cut(s) 167, 350
PflMI CCANNNNNTGG 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 237
PscI ACATGT 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspPI GGNCC 1 cut(s) 237
PspPPI RGGWCCY 1 cut(s) 237
RsaI GTAC 2 cut(s) 272, 445
RsaNI GTAC 2 cut(s) 271, 444
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 2 cut(s) 222, 330
Sau3AI GATC 2 cut(s) 338, 436
Sau96I GGNCC 1 cut(s) 237
ScaI AGTACT 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 450
SetI ASST 4 cut(s) 183, 242, 295, 372
SinI GGWCC 1 cut(s) 237
SmiI ATTTAAAT 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 5 cut(s) 93, 171, 263, 332, 379
SspI AATATT 1 cut(s) 279
SspMI CTAG 3 cut(s) 158, 182, 306
StyD4I CCNGG 1 cut(s) 448
SwaI ATTTAAAT 1 cut(s) 331
TaaI ACNGT 2 cut(s) 56, 124
TaiI ACGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 102
TasI AATT 5 cut(s) 93, 171, 263, 332, 379
TatI WGTACW 2 cut(s) 270, 443
TfiI GAWTC 2 cut(s) 167, 350
Tru1I TTAA 2 cut(s) 222, 330
Tru9I TTAA 2 cut(s) 222, 330
TscAI CASTG 2 cut(s) 61, 129
TspDTI ATGAA 2 cut(s) 33, 78
TspRI CASTG 2 cut(s) 61, 129
Van91I CCANNNNNTGG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 379
XceI RCATGY 2 cut(s) 288, 326
XspI CTAG 3 cut(s) 158, 182, 306
ZrmI AGTACT 1 cut(s) 445
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.