Rmu_sc0023743.1_g000001

Protein FAR1-RELATED SEQUENCE 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023743.1
OG0000252
Physical Location & Seq
Forward (+)
4 .. 729
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023743.1_g000001.1.cds

Sequence Viewer

Length: 726 bp
atgatccctatccgcgaaaatgagagcttgcctgcattttttgatggttatgtacataaacatacgtctttcaaggagttcgtcgataagtatgacctagctctacataggaagcgcatgaaagaggtggcggcggatctggagtcaagaatgtcgagctttgaattgaaaacacgatgcaactttgaagtgcaactatgtaaagtgtacaccaaggatattttcaagaggttccagttggaggttgagggaatgtactcctgcttcaatacaaggcaggtcaatgtcagtgggcctataataacctacatagttaaagaacgagttgaagttgaaggaaatgagaaggaagtcagatgctatgaggttttgtatgagacaacacaagtggatattcgatgtatctgcagtttgttcaactacaaagggtatctgtgcaggcatgcattaaacgttctgaactacaatggtgtggaagtaatcccgtcccgatacattttgccacggtggtgtaaagatttcaagcgcaggtatcttctgcatcaaggatccagtaatattgatgtgtatgacccagcatactggcgtaatcatctttataatctcgcccttccagttgcggaagaaggggcacaatctgaggaacattataagacgacgttgcaagcattggaggagttattgaacaagtttcatcttgtagaggataccctcaatgtaacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

241

Amino Acids

28.55

Weight (kDa)

6.46

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 600, 651
Acc36I ACCTGC 2 cut(s) 268, 519
AccII CGCG 1 cut(s) 15
AciI CCGC 4 cut(s) 13, 131, 134, 620
AclI AACGTT 1 cut(s) 453
AclWI GGATC 3 cut(s) 144, 543, 556
AfaI GTAC 3 cut(s) 54, 209, 257
AfiI CCNNNNNNNGG 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AleI CACNNNNGTG 1 cut(s) 508
AluBI AGCT 3 cut(s) 27, 101, 159
AluI AGCT 3 cut(s) 27, 101, 159
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 3 cut(s) 144, 543, 556
AoxI GGCC 1 cut(s) 293
AspLEI GCGC 2 cut(s) 117, 528
AspS9I GGNCC 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 634
BamHI GGATCC 1 cut(s) 548
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
BccI CCATC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 387, 421
BciVI GTATCC 1 cut(s) 700
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 406
BfuAI ACCTGC 2 cut(s) 268, 519
BfuI GTATCC 1 cut(s) 700
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 233, 550
BmsI GCATC 3 cut(s) 167, 347, 550
BpmI CTGGAG 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 213, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 4 cut(s) 235, 552, 587, 614
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 213, 503
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 4 cut(s) 235, 552, 587, 614
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 634
BseYI CCCAGC 1 cut(s) 574
BsgI GTGCAG 1 cut(s) 457
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 295
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 634
Bsp1407I TGTACA 2 cut(s) 52, 207
Bsp143I GATC 3 cut(s) 3, 136, 548
BspACI CCGC 4 cut(s) 13, 131, 134, 620
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 631
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 233, 550
BspMAI CTGCAG 1 cut(s) 410
BspMI ACCTGC 2 cut(s) 268, 519
BspPI GGATC 3 cut(s) 144, 543, 556
BsrGI TGTACA 2 cut(s) 52, 207
BsrI ACTGG 4 cut(s) 235, 552, 587, 614
BssECI CCNNGG 2 cut(s) 213, 503
BssMI GATC 3 cut(s) 3, 136, 548
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 507
BstAUI TGTACA 2 cut(s) 52, 207
BstC8I GCNNGC 5 cut(s) 29, 33, 440, 444, 666
BstDEI CTNAG 1 cut(s) 639
BstDSI CCRYGG 1 cut(s) 503
BstFNI CGCG 1 cut(s) 15
BstHHI GCGC 2 cut(s) 117, 528
BstKTI GATC 3 cut(s) 6, 139, 551
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 3 cut(s) 3, 136, 548
BstNSI RCATGY 1 cut(s) 446
BstSFI CTRYAG 1 cut(s) 406
BstSLI GKGCMC 1 cut(s) 634
BstUI CGCG 1 cut(s) 15
BstX2I RGATCY 2 cut(s) 136, 548
BstXI CCANNNNNNTGG 1 cut(s) 582
BstYI RGATCY 2 cut(s) 136, 548
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 503
BtsIMutI CAGTG 1 cut(s) 295
BveI ACCTGC 2 cut(s) 268, 519
Cac8I GCNNGC 5 cut(s) 29, 33, 440, 444, 666
CfoI GCGC 2 cut(s) 117, 528
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 3 cut(s) 53, 208, 256
CspCI CAANNNNNGTGG 4 cut(s) 271, 306, 369, 404
CviAII CATG 2 cut(s) 118, 443
CviJI RGCY 4 cut(s) 27, 101, 159, 295
CviKI_1 RGCY 4 cut(s) 27, 101, 159, 295
CviQI GTAC 3 cut(s) 53, 208, 256
DdeI CTNAG 1 cut(s) 639
DpnI GATC 3 cut(s) 5, 138, 550
DpnII GATC 3 cut(s) 3, 136, 548
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 121, 446
FaqI GGGAC 1 cut(s) 472
FatI CATG 2 cut(s) 117, 442
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 98
GlaI GCGC 2 cut(s) 116, 527
GluI GCNGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 578
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 295
HhaI GCGC 2 cut(s) 117, 528
Hin1II CATG 2 cut(s) 121, 446
Hin6I GCGC 2 cut(s) 115, 526
HinP1I GCGC 2 cut(s) 115, 526
HinfI GANTC 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 208, 210
Hpy188I TCNGA 3 cut(s) 356, 459, 640
Hpy188III TCNNGA 4 cut(s) 140, 147, 226, 489
Hpy8I GTNNAC 2 cut(s) 208, 210
Hpy99I CGWCG 2 cut(s) 86, 661
HpyAV CCTTC 4 cut(s) 329, 340, 620, 620
HpyCH4III ACNGT 1 cut(s) 507
HpyCH4IV ACGT 3 cut(s) 65, 453, 659
HpyCH4V TGCA 8 cut(s) 35, 180, 193, 408, 438, 446, 541, 664
HpyF3I CTNAG 1 cut(s) 639
HpySE526I ACGT 3 cut(s) 65, 453, 659
Hsp92II CATG 2 cut(s) 121, 446
HspAI GCGC 2 cut(s) 115, 526
Kzo9I GATC 3 cut(s) 3, 136, 548
LweI GCATC 3 cut(s) 167, 347, 550
MaeI CTAG 1 cut(s) 98
MaeII ACGT 3 cut(s) 65, 453, 659
MaeIII GTNAC 1 cut(s) 718
MalI GATC 3 cut(s) 5, 138, 550
MboI GATC 3 cut(s) 3, 136, 548
MboII GAAGA 2 cut(s) 527, 635
MflI RGATCY 2 cut(s) 136, 548
MhlI GDGCHC 1 cut(s) 634
MluCI AATT 1 cut(s) 164
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 9 cut(s) 118, 222, 235, 241, 358, 634, 667, 697, 722
Mph1103I ATGCAT 1 cut(s) 448
MseI TTAA 2 cut(s) 315, 449
MslI CAYNNNNRTG 1 cut(s) 508
MvnI CGCG 1 cut(s) 15
NdeII GATC 3 cut(s) 3, 136, 548
NlaIII CATG 2 cut(s) 121, 446
NlaIV GGNNCC 2 cut(s) 233, 550
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 1 cut(s) 446
OliI CACNNNNGTG 1 cut(s) 508
PaeI GCATGC 1 cut(s) 446
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PsiI TTATAA 2 cut(s) 600, 651
Psp1406I AACGTT 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 574
PspN4I GGNNCC 2 cut(s) 233, 550
PspPI GGNCC 1 cut(s) 293
PstI CTGCAG 1 cut(s) 410
PsuI RGATCY 2 cut(s) 136, 548
RsaI GTAC 3 cut(s) 54, 209, 257
RsaNI GTAC 3 cut(s) 53, 208, 256
RseI CAYNNNNRTG 1 cut(s) 508
SaqAI TTAA 2 cut(s) 315, 449
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 3 cut(s) 3, 136, 548
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 152
SduI GDGCHC 1 cut(s) 634
SfaNI GCATC 3 cut(s) 167, 347, 550
SfcI CTRYAG 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 508
SphI GCATGC 1 cut(s) 446
Sse9I AATT 1 cut(s) 164
SsiI CCGC 4 cut(s) 13, 131, 134, 620
SspI AATATT 1 cut(s) 559
SspMI CTAG 1 cut(s) 98
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 507
TaiI ACGT 3 cut(s) 68, 456, 662
TaqI TCGA 3 cut(s) 84, 155, 397
TasI AATT 1 cut(s) 164
TatI WGTACW 3 cut(s) 52, 207, 255
TauI GCSGC 1 cut(s) 134
Tru1I TTAA 2 cut(s) 315, 449
Tru9I TTAA 2 cut(s) 315, 449
TscAI CASTG 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 134, 683
TspRI CASTG 1 cut(s) 295
XceI RCATGY 1 cut(s) 446
XspI CTAG 1 cut(s) 98
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.