MD05G1027500.v1.1

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000252
Physical Location & Seq
Reverse (-)
4460343 .. 4461606
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1027500.v1.1.491

Sequence Viewer

Length: 849 bp
ATGCCAGATAAGTATATCATTCGGAGATGGAGGAAGGATGTGAAAAGATGCCACACAAGGGTTAGGATAAGTTATAGTAATTGGGTTGCTACACCTGAAGCACAAAGATCTGATATGATGCAGAAAACCTTTGATGACATTAAGGAATTAGCCAATGATTTTGATGATAAGTGTATGCTTGTGGTGAGATGGATGCATAAACTAAAGGAGCAAATATGTAAACATGATGGAGCGGCTAGTAGCACTCAACCAACACCACAGTCACCTGTTGCTATGAACTCCGATCCTCTTCCTAACCCAAGTCAGCGTATACTTACGCCATTGTCGGCTAGAGGTAAAGGTTGTCCACCATCAAAGAGGAAACAATCCAAGACTGAGCAAGTAATCAAAAGAAGACAAAAAAGACAGAAAAAGATTACATCTCGTAAGGACAATACAGATGAGGAAAGAACACAGAAATCCATAGAAAGTGATGCAATATGCCATATTGATGGTCCACCTCCTTGTAGAAGTGATAACATAATTGCAACACAAGAGAGTAATGTCATTGTGGAGCATTCTCATCTTACACAAGGAGTTCAAATTTGCATGCCTGCCAACCAATATCCTATTTTTCCCCATGCTAATGAAAACATGGCTTTGTTATTGGGACTCAGTCAAGGTAGTCATCCAAACCCGTTGTACAAAGAGTCTGAGATTGGAAATATAAGTTATCCTACTATGCATGGAAATTATGTCCAAGTAAACATTGAGAAGGGTCAACAATATCCATATTGGAATGGAGGTTATAGTATGTACAATATGCATAGCTCTACTTCAAGAGGAAATGATGACCAAGAGCTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

283

Amino Acids

32.29

Weight (kDa)

9.07

Isoelectric Point (pI)

72.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 233
AccI GTMKAC 1 cut(s) 310
AciI CCGC 1 cut(s) 233
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 582
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 2 cut(s) 683, 797
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 581, 819
AluBI AGCT 2 cut(s) 810, 841
AluI AGCT 2 cut(s) 810, 841
Alw21I GWGCWC 1 cut(s) 843
AlwI GGATC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 494
AsuHPI GGTGA 2 cut(s) 196, 255
AvaII GGWCC 1 cut(s) 494
BanII GRGCYC 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 400
Bbv12I GWGCWC 1 cut(s) 843
BccI CCATC 5 cut(s) 21, 183, 221, 358, 485
BfaI CTAG 2 cut(s) 237, 330
BglII AGATCT 1 cut(s) 107
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 494
BmsI GCATC 4 cut(s) 38, 108, 183, 463
BpiI GAAGAC 1 cut(s) 400
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseGI GGATG 3 cut(s) 43, 198, 667
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 3 cut(s) 366, 667, 684
BsiHKAI GWGCWC 1 cut(s) 843
BslFI GGGAC 1 cut(s) 663
BslI CCNNNNNNNGG 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 663
BsmI GAATGC 1 cut(s) 556
Bsp1286I GDGCHC 1 cut(s) 843
Bsp1407I TGTACA 2 cut(s) 681, 795
Bsp143I GATC 2 cut(s) 107, 283
BspACI CCGC 1 cut(s) 233
BspCNI CTCAG 3 cut(s) 367, 666, 685
BspPI GGATC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 233
BsrGI TGTACA 2 cut(s) 681, 795
BssMI GATC 2 cut(s) 107, 283
BssNAI GTATAC 1 cut(s) 311
Bst1107I GTATAC 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 294
BstAUI TGTACA 2 cut(s) 681, 795
BstC8I GCNNGC 2 cut(s) 590, 594
BstDEI CTNAG 3 cut(s) 375, 653, 693
BstF5I GGATG 3 cut(s) 43, 198, 667
BstKTI GATC 2 cut(s) 110, 286
BstMBI GATC 2 cut(s) 107, 283
BstNSI RCATGY 1 cut(s) 592
BstV2I GAAGAC 1 cut(s) 400
BstX2I RGATCY 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 491
BstYI RGATCY 1 cut(s) 107
BstZ17I GTATAC 1 cut(s) 311
BtsCI GGATG 3 cut(s) 43, 198, 667
Cac8I GCNNGC 2 cut(s) 590, 594
Cfr13I GGNCC 1 cut(s) 494
Csp6I GTAC 2 cut(s) 682, 796
CviAII CATG 5 cut(s) 224, 589, 620, 634, 725
CviJI RGCY 6 cut(s) 152, 236, 329, 638, 810, 841
CviKI_1 RGCY 6 cut(s) 152, 236, 329, 638, 810, 841
CviQI GTAC 2 cut(s) 682, 796
DdeI CTNAG 3 cut(s) 375, 653, 693
DpnI GATC 2 cut(s) 109, 285
DpnII GATC 2 cut(s) 107, 283
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 841
Eco24I GRGCYC 1 cut(s) 843
Eco47I GGWCC 1 cut(s) 494
Eco53kI GAGCTC 1 cut(s) 841
Eco57I CTGAAG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 841
EcoT22I ATGCAT 3 cut(s) 198, 726, 807
EcoT38I GRGCYC 1 cut(s) 843
FaeI CATG 5 cut(s) 227, 592, 623, 637, 728
FaqI GGGAC 1 cut(s) 663
FatI CATG 5 cut(s) 223, 588, 619, 633, 724
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 3 cut(s) 50, 205, 654
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 2 cut(s) 237, 330
GluI GCNGC 1 cut(s) 234
Hin1II CATG 5 cut(s) 227, 592, 623, 637, 728
HincII GTYRAC 1 cut(s) 761
HindII GTYRAC 1 cut(s) 761
HinfI GANTC 2 cut(s) 651, 689
HphI GGTGA 2 cut(s) 196, 255
Hpy166II GTNNAC 6 cut(s) 221, 311, 347, 497, 745, 761
Hpy188I TCNGA 4 cut(s) 24, 112, 283, 694
Hpy188III TCNNGA 1 cut(s) 819
Hpy8I GTNNAC 6 cut(s) 221, 311, 347, 497, 745, 761
HpyAV CCTTC 2 cut(s) 28, 748
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4V TGCA 7 cut(s) 121, 196, 476, 527, 588, 724, 805
HpyF3I CTNAG 3 cut(s) 375, 653, 693
Hsp92II CATG 5 cut(s) 227, 592, 623, 637, 728
Kzo9I GATC 2 cut(s) 107, 283
LmnI GCTCC 3 cut(s) 208, 230, 553
LpnPI CCDG 4 cut(s) 18, 108, 279, 606
LweI GCATC 4 cut(s) 38, 108, 183, 463
MaeI CTAG 2 cut(s) 237, 330
MaeIII GTNAC 1 cut(s) 261
MalI GATC 2 cut(s) 109, 285
MbiI CCGCTC 1 cut(s) 233
MboI GATC 2 cut(s) 107, 283
MboII GAAGA 2 cut(s) 281, 405
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 843
MluCI AATT 5 cut(s) 79, 146, 522, 582, 730
MlyI GAGTC 2 cut(s) 645, 698
MnlI CCTC 8 cut(s) 24, 297, 326, 351, 436, 510, 776, 815
Mph1103I ATGCAT 3 cut(s) 198, 726, 807
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 2 cut(s) 489, 624
Mva1269I GAATGC 1 cut(s) 556
NdeII GATC 2 cut(s) 107, 283
NlaIII CATG 5 cut(s) 227, 592, 623, 637, 728
NmuCI GTSAC 1 cut(s) 261
NsiI ATGCAT 3 cut(s) 198, 726, 807
NspI RCATGY 1 cut(s) 592
PaeI GCATGC 1 cut(s) 592
PctI GAATGC 1 cut(s) 556
PflFI GACNNNGTC 1 cut(s) 654
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 2 cut(s) 645, 697
PpsI GAGTC 2 cut(s) 645, 697
Psp124BI GAGCTC 1 cut(s) 843
PspPI GGNCC 1 cut(s) 494
PsuI RGATCY 1 cut(s) 107
PsyI GACNNNGTC 1 cut(s) 654
RsaI GTAC 2 cut(s) 683, 797
RsaNI GTAC 2 cut(s) 682, 796
RseI CAYNNNNRTG 2 cut(s) 489, 624
SacI GAGCTC 1 cut(s) 843
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 107, 283
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 2 cut(s) 645, 698
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 4 cut(s) 38, 108, 183, 463
SinI GGWCC 1 cut(s) 494
SmiMI CAYNNNNRTG 2 cut(s) 489, 624
SphI GCATGC 1 cut(s) 592
Sse9I AATT 5 cut(s) 79, 146, 522, 582, 730
SsiI CCGC 1 cut(s) 233
SspMI CTAG 2 cut(s) 237, 330
SstI GAGCTC 1 cut(s) 843
TaaI ACNGT 1 cut(s) 261
TasI AATT 5 cut(s) 79, 146, 522, 582, 730
TatI WGTACW 2 cut(s) 681, 795
TauI GCSGC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 261
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 2 cut(s) 290, 642
Tth111I GACNNNGTC 1 cut(s) 654
VpaK11BI GGWCC 1 cut(s) 494
XapI RAATTY 1 cut(s) 582
XceI RCATGY 1 cut(s) 592
XmiI GTMKAC 1 cut(s) 310
XspI CTAG 2 cut(s) 237, 330
Zsp2I ATGCAT 3 cut(s) 198, 726, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.