Rh7BG466600

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000252
Physical Location & Seq
Reverse (-)
55200193 .. 55200468
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG466600.1

Sequence Viewer

Length: 276 bp
ATGTGTAATTTGTTTTATGAGGTGGCAGACTTAGCAGATGGCAAAGAAGAAGATTGTAACATGGTGATGGGGATATCAAATGATCTGAAAATGAAATTGACTCAAAGTAAAGTTGATTGTGAAAGGAAAGGAGATAATACTGAGTTGGTTGAAAAGACAAAGCTTGATGGAAAACTTTCAAAGAATGGTTGCGAAGTACTTGATCCATTATCTGTTCGAAGTAAAGGTCGTCCTCCAATCAACCGAAAACAATCTACGACCGAGCAAATTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

91

Amino Acids

10.19

Weight (kDa)

5.46

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 197
AfaI GTAC 1 cut(s) 198
AgsI TTSAA 2 cut(s) 152, 180
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
AlwI GGATC 1 cut(s) 197
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
Asp700I GAANNNNTTC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 217
BccI CCATC 3 cut(s) 32, 61, 161
BmcAI AGTACT 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 217
BseMII CTCAG 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 261
BsiEI CGRYCG 1 cut(s) 261
Bsp119I TTCGAA 1 cut(s) 217
Bsp143I GATC 2 cut(s) 82, 202
BspCNI CTCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 197
BspT104I TTCGAA 1 cut(s) 217
BssMI GATC 2 cut(s) 82, 202
BstBI TTCGAA 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 31, 141
BstKTI GATC 2 cut(s) 85, 205
BstMBI GATC 2 cut(s) 82, 202
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 197
CviAII CATG 1 cut(s) 61
CviJI RGCY 1 cut(s) 163
CviKI_1 RGCY 1 cut(s) 163
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 2 cut(s) 31, 141
DpnI GATC 2 cut(s) 84, 204
DpnII GATC 2 cut(s) 82, 202
Eco32I GATATC 1 cut(s) 75
EcoRV GATATC 1 cut(s) 75
FaeI CATG 1 cut(s) 64
FaiI YATR 2 cut(s) 18, 62
FatI CATG 1 cut(s) 60
Hin1II CATG 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 100
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 31, 141
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 2 cut(s) 82, 202
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 84, 204
MboI GATC 2 cut(s) 82, 202
MboII GAAGA 2 cut(s) 59, 62
MluCI AATT 3 cut(s) 7, 95, 267
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 2 cut(s) 13, 243
MroXI GAANNNNTTC 1 cut(s) 175
MslI CAYNNNNRTG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 2 cut(s) 82, 202
NlaIII CATG 1 cut(s) 64
NspV TTCGAA 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 175
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 65
Sau3AI GATC 2 cut(s) 82, 202
ScaI AGTACT 1 cut(s) 198
SchI GAGTC 1 cut(s) 94
SetI ASST 3 cut(s) 24, 165, 229
SfuI TTCGAA 1 cut(s) 217
SgeI CNNG 3 cut(s) 73, 176, 212
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 3 cut(s) 7, 95, 267
TaqI TCGA 1 cut(s) 217
TaqII GACCGA 1 cut(s) 275
TasI AATT 3 cut(s) 7, 95, 267
TatI WGTACW 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 175
ZrmI AGTACT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.