Rmu_sc0004350.1_g000005

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004350.1
OG0000252
Physical Location & Seq
Forward (+)
10716 .. 11102
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004350.1_g000005.1.cds

Sequence Viewer

Length: 387 bp
atgcaaaagaattttgatgacattaaggagctagcatacgattctgaagataagtgcatgattgttatgacttgtttgcataacttaaaggatgaactatccaaacacgagtccaagaacattggtactagtggtggtgctaaaccaattcctggctcacctatcaatagaaatgggactgtcgactttgatggtatttcaaatccaagtcaacatatacttactccattggtaaataagagaaaatgtcgaccaccatctaaaaggaaggtatctaaggtagaggaagaggtaaaaaagaaacagaaaagagaacaaaagaacaaatgtggtgggaacagtagtaatgaagaagtaggagtgaaggtatgcaacataatagtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

128

Amino Acids

14.26

Weight (kDa)

9.22

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AccI GTMKAC 2 cut(s) 183, 250
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 201
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
ApoI RAATTY 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 150
AsuNHI GCTAGC 1 cut(s) 31
BauI CACGAG 1 cut(s) 107
BccI CCATC 2 cut(s) 185, 265
BciT130I CCWGG 1 cut(s) 153
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 2 cut(s) 32, 129
Bme1390I CCNGG 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 153
BmtI GCTAGC 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 190
BspOI GCTAGC 1 cut(s) 35
BssSI CACGAG 1 cut(s) 107
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 181, 341
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 97
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 126
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 1 cut(s) 58
CviJI RGCY 2 cut(s) 31, 156
CviKI_1 RGCY 2 cut(s) 31, 156
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 1 cut(s) 61
FaiI YATR 8 cut(s) 37, 59, 68, 81, 216, 218, 370, 377
FaqI GGGAC 1 cut(s) 190
FatI CATG 1 cut(s) 57
FblI GTMKAC 2 cut(s) 183, 250
FokI GGATG 1 cut(s) 104
FspBI CTAG 2 cut(s) 32, 129
Hin1II CATG 1 cut(s) 61
HincII GTYRAC 3 cut(s) 184, 212, 251
HindII GTYRAC 3 cut(s) 184, 212, 251
HinfI GANTC 2 cut(s) 41, 110
HphI GGTGA 1 cut(s) 150
Hpy166II GTNNAC 3 cut(s) 184, 212, 251
Hpy188I TCNGA 1 cut(s) 46
Hpy8I GTNNAC 3 cut(s) 184, 212, 251
HpyAV CCTTC 2 cut(s) 262, 358
HpyCH4III ACNGT 2 cut(s) 181, 341
HpyCH4V TGCA 4 cut(s) 4, 57, 79, 372
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 1 cut(s) 61
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 138, 165
MaeI CTAG 2 cut(s) 32, 129
MboII GAAGA 3 cut(s) 59, 299, 362
MluCI AATT 2 cut(s) 10, 147
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 2 cut(s) 277, 283
MseI TTAA 2 cut(s) 24, 86
MslI CAYNNNNRTG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 1 cut(s) 61
PfeI GAWTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 152
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 380
SalI GTCGAC 2 cut(s) 182, 249
SaqAI TTAA 2 cut(s) 24, 86
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 153
SetI ASST 6 cut(s) 33, 163, 273, 282, 294, 369
SmiMI CAYNNNNRTG 1 cut(s) 380
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 2 cut(s) 10, 147
SspMI CTAG 2 cut(s) 32, 129
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 181, 341
TaqI TCGA 2 cut(s) 183, 250
TasI AATT 2 cut(s) 10, 147
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 24, 86
Tru9I TTAA 2 cut(s) 24, 86
TspDTI ATGAA 2 cut(s) 108, 363
Van91I CCANNNNNTGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 10
XmiI GTMKAC 2 cut(s) 183, 250
XspI CTAG 2 cut(s) 32, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.