RLG00000012728

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000252
Physical Location & Seq
Reverse (-)
21673679 .. 21674553
875 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012728

Sequence Viewer

Length: 735 bp
ATGCATTGTGGCATATCATCATCTAAAAGGAATGGTACAATTATAGATATCACTGTGGATGAAGATGTGAAGATCGGTACAGAAATGAGACGTGTCCCATTCATAGTTCATTTTAATGAGGATAGGTGTGAGGTAAATTGTGTGTGTCGTCTATTTGAATTCAGAGGAATATTATGTCGGCATGCAATTGTGGTTATAATTCATAAAAATATGGCGGGCGTTCCAGAGAAATACATTTTAAAACGATGGACAGCAAGTGTAAAAAGAAGTCATAGCAAAGTGAAAATAAGCTATGGCAATGGGACTGCCAAGCCTGAAGCACAAAGAAATGATAAGATGTGTAATTTGTTTTATGAGGTAGCAGACTTAGTAGATGACAAAGAAGAAGATTGTAACATGGTGATGGGGATATTAAATGATCTAAAAATGAAGCTGACTCAAAGTAAAGTTGATTGCGAAAGGAAAGGAGATAATATTGAGTTGGTTGAGAAGACAAAGCGTGATGGAAAACTTTTCGAGAATGGTTGTGAAATACTTGATCCATTATCTGTTCGAAGTAAAGGTCATCCTCCAGTCAACCGAAAACAATCTACTACCGAGCAAATTATTTTAAAAAGAAAAGAAACTGAAGCTGCAAAAATATCTAATGATAAAAATAAATTCCAGGATTCGGAAATAATGAAAAGCACTACTGATGATTTTGGGACGCAAGAAAGCATTGTGCTTCAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

245

Amino Acids

27.84

Weight (kDa)

8.3

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 43 - 70 5.8e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 197
AciI CCGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 533
AcsI RAATTY 2 cut(s) 158, 659
AcuI CTGAAG 3 cut(s) 336, 648, 710
AfaI GTAC 2 cut(s) 37, 79
AfiI CCNNNNNNNGG 1 cut(s) 670
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 1 cut(s) 158
AjiI CACGTC 1 cut(s) 92
AjnI CCWGG 1 cut(s) 663
AluBI AGCT 3 cut(s) 291, 433, 632
AluI AGCT 3 cut(s) 291, 433, 632
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 533
ApeKI GCWGC 1 cut(s) 632
ApoI RAATTY 2 cut(s) 158, 659
ArsI GACNNNNNNTTYG 2 cut(s) 547, 579
AsuHPI GGTGA 1 cut(s) 412
AsuII TTCGAA 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 497
BbvI GCAGC 1 cut(s) 619
BccI CCATC 3 cut(s) 240, 397, 497
BciT130I CCWGG 1 cut(s) 665
BcoDI GTCTC 1 cut(s) 82
BisI GCNGC 1 cut(s) 633
BlsI GCNGC 1 cut(s) 634
Bme1390I CCNGG 1 cut(s) 665
BmgBI CACGTC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 665
BpiI GAAGAC 1 cut(s) 497
BpmI CTGGAG 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 553
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse1I ACTGG 1 cut(s) 572
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 665
BseGI GGATG 2 cut(s) 64, 565
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 572
BseXI GCAGC 1 cut(s) 619
BslFI GGGAC 3 cut(s) 80, 316, 718
BslI CCNNNNNNNGG 1 cut(s) 670
BsmAI GTCTC 1 cut(s) 82
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 3 cut(s) 80, 316, 718
Bsp119I TTCGAA 1 cut(s) 553
Bsp143I GATC 3 cut(s) 72, 418, 538
BspACI CCGC 1 cut(s) 215
BspPI GGATC 1 cut(s) 533
BspT104I TTCGAA 1 cut(s) 553
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 1 cut(s) 572
BssMI GATC 3 cut(s) 72, 418, 538
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 1 cut(s) 55
BstBI TTCGAA 1 cut(s) 553
BstC8I GCNNGC 2 cut(s) 183, 217
BstDEI CTNAG 1 cut(s) 367
BstF5I GGATG 2 cut(s) 64, 565
BstKTI GATC 3 cut(s) 75, 421, 541
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 3 cut(s) 72, 418, 538
BstNI CCWGG 1 cut(s) 665
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 663
BstV1I GCAGC 1 cut(s) 619
BstV2I GAAGAC 1 cut(s) 497
BtrI CACGTC 1 cut(s) 92
BtsCI GGATG 2 cut(s) 64, 565
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 183, 217
CseI GACGC 1 cut(s) 715
Csp6I GTAC 2 cut(s) 36, 78
CviAII CATG 2 cut(s) 182, 397
CviJI RGCY 4 cut(s) 291, 313, 433, 632
CviKI_1 RGCY 4 cut(s) 291, 313, 433, 632
CviQI GTAC 2 cut(s) 36, 78
DdeI CTNAG 1 cut(s) 367
DpnI GATC 3 cut(s) 74, 420, 540
DpnII GATC 3 cut(s) 72, 418, 538
DraI TTTAAA 2 cut(s) 240, 612
Eco32I GATATC 1 cut(s) 49
Eco57I CTGAAG 3 cut(s) 336, 648, 710
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 663
EcoRV GATATC 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 2 cut(s) 185, 400
FaqI GGGAC 3 cut(s) 80, 316, 718
FatI CATG 2 cut(s) 181, 396
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 633
FokI GGATG 2 cut(s) 71, 552
Fsp4HI GCNGC 1 cut(s) 633
GluI GCNGC 1 cut(s) 633
GsuI CTGGAG 1 cut(s) 555
HgaI GACGC 1 cut(s) 715
Hin1II CATG 2 cut(s) 185, 400
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 2 cut(s) 436, 668
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 2 cut(s) 164, 673
Hpy188III TCNNGA 2 cut(s) 224, 517
Hpy8I GTNNAC 1 cut(s) 577
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 4, 185, 635
HpyF3I CTNAG 1 cut(s) 367
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 2 cut(s) 185, 400
Kzo9I GATC 3 cut(s) 72, 418, 538
LpnPI CCDG 6 cut(s) 237, 327, 585, 650, 677, 713
Lsp1109I GCAGC 1 cut(s) 619
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 392
MalI GATC 3 cut(s) 74, 420, 540
MboI GATC 3 cut(s) 72, 418, 538
MboII GAAGA 5 cut(s) 74, 82, 395, 398, 502
MfeI CAATTG 1 cut(s) 186
MluCI AATT 8 cut(s) 39, 136, 158, 186, 198, 343, 603, 659
MlyI GAGTC 1 cut(s) 430
MnlI CCTC 5 cut(s) 112, 124, 158, 349, 579
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 114, 239, 413, 611
MslI CAYNNNNRTG 2 cut(s) 114, 401
MspR9I CCNGG 1 cut(s) 665
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 665
NdeII GATC 3 cut(s) 72, 418, 538
NlaIII CATG 2 cut(s) 185, 400
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 185
NspV TTCGAA 1 cut(s) 553
PaeI GCATGC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 663
PkrI GCNGC 1 cut(s) 634
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PsiI TTATAA 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 663
PspGI CCWGG 1 cut(s) 663
RsaI GTAC 2 cut(s) 37, 79
RsaNI GTAC 2 cut(s) 36, 78
RseI CAYNNNNRTG 2 cut(s) 114, 401
SaqAI TTAA 4 cut(s) 114, 239, 413, 611
SatI GCNGC 1 cut(s) 633
Sau3AI GATC 3 cut(s) 72, 418, 538
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 665
SetI ASST 9 cut(s) 94, 128, 135, 293, 360, 435, 565, 634, 732
SfuI TTCGAA 1 cut(s) 553
SmiMI CAYNNNNRTG 2 cut(s) 114, 401
SphI GCATGC 1 cut(s) 185
Sse9I AATT 8 cut(s) 39, 136, 158, 186, 198, 343, 603, 659
SsiI CCGC 1 cut(s) 215
SspI AATATT 2 cut(s) 171, 475
StyD4I CCNGG 1 cut(s) 663
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 516, 553
TasI AATT 8 cut(s) 39, 136, 158, 186, 198, 343, 603, 659
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 4 cut(s) 114, 239, 413, 611
Tru9I TTAA 4 cut(s) 114, 239, 413, 611
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 632
TspDTI ATGAA 6 cut(s) 75, 91, 98, 191, 443, 695
TspRI CASTG 1 cut(s) 58
XapI RAATTY 2 cut(s) 158, 659
XceI RCATGY 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.