Rh6CG163900

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000252
Physical Location & Seq
Reverse (-)
22299920 .. 22300471
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG163900.1

Sequence Viewer

Length: 552 bp
ATGAATTCATTTTTTGATGGCCATGTCAATTCCAAGACTACTTTGAAACAGTTTGTGGAGCAATATGAAAATGCAATGAGAAGTAAGGTGGAGAAAGAGACCTACGAAGATTTCAAGTGTTTCTCATATAGTCTTCCTGGTGCAACTCATTATGACATGGAAAAACAAGCACATGATATCTACACAACTTCAAAGTTCAAAGAGTTTCGAGATGAATTAACAGGTAAAATGTATTGTGACTTTATTTCAGTTGAAGTGGATAATTCAATTTTACAGTACATAGTTTCTGAAGATATCAAGATTGGGGAGATGAAGAAAACTGTTCATTTTCATGTTTCATTAAATGAAGAGAATGATGAAGTTAATTGCAATTGTTGCCTCTTTCAGTTTAGAGGTATATTATGCAGGCATGTAATATATGTTTTGATTCGTCATAAAAAAAACATGATTCCAGATAAATATATCATGAGAAGATGGAGGAAGGATGTGAAGAGATGCCACACAAGAGTTAAAATCAGTTATGGCGGATGGGATGCTAGACCTGAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

183

Amino Acids

21.87

Weight (kDa)

8.1

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 110 - 145 9.8e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 525
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 6 cut(s) 46, 115, 192, 199, 254, 267
AjnI CCWGG 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 92
AoxI GGCC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 4
BalI TGGCCA 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 125
BccI CCATC 3 cut(s) 11, 468, 522
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 537
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 485, 523
BpiI GAAGAC 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 3 cut(s) 490, 533, 538
BseMI GCAATG 1 cut(s) 81
BshFI GGCC 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 92
BspACI CCGC 1 cut(s) 525
BspANI GGCC 1 cut(s) 21
BspHI TCATGA 1 cut(s) 465
BspTNI GGTCTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 3 cut(s) 51, 276, 322
Bst6I CTCTTC 2 cut(s) 342, 485
BstAPI GCANNNNNTGC 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 407
BstF5I GGATG 3 cut(s) 490, 533, 538
BstMAI GTCTC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 125
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 3 cut(s) 490, 533, 538
Cac8I GCNNGC 1 cut(s) 407
CciI TCATGA 1 cut(s) 465
Csp6I GTAC 1 cut(s) 277
CviAII CATG 7 cut(s) 23, 157, 173, 332, 410, 445, 466
CviJI RGCY 1 cut(s) 21
CviKI_1 RGCY 1 cut(s) 21
CviQI GTAC 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 342, 485
EarI CTCTTC 2 cut(s) 342, 485
EciI GGCGGA 1 cut(s) 540
Eco31I GGTCTC 1 cut(s) 92
Eco32I GATATC 2 cut(s) 178, 295
Eco57I CTGAAG 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 136
EcoRV GATATC 2 cut(s) 178, 295
FaeI CATG 7 cut(s) 26, 160, 176, 335, 413, 448, 469
FatI CATG 7 cut(s) 22, 156, 172, 331, 409, 444, 465
FokI GGATG 3 cut(s) 497, 540, 545
FspBI CTAG 1 cut(s) 537
HaeIII GGCC 1 cut(s) 21
Hin1II CATG 7 cut(s) 26, 160, 176, 335, 413, 448, 469
HinfI GANTC 3 cut(s) 427, 448, 545
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 4 cut(s) 209, 298, 452, 466
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 3 cut(s) 51, 276, 322
HpyCH4V TGCA 4 cut(s) 74, 143, 369, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
Hsp92II CATG 7 cut(s) 26, 160, 176, 335, 413, 448, 469
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 5 cut(s) 123, 150, 207, 391, 465
LweI GCATC 2 cut(s) 485, 523
MaeI CTAG 1 cut(s) 537
MaeIII GTNAC 1 cut(s) 236
MboII GAAGA 7 cut(s) 119, 125, 302, 325, 359, 483, 502
MfeI CAATTG 1 cut(s) 370
MlsI TGGCCA 1 cut(s) 21
MluCI AATT 7 cut(s) 4, 28, 215, 262, 267, 364, 370
MluNI TGGCCA 1 cut(s) 21
MnlI CCTC 3 cut(s) 386, 389, 471
Mox20I TGGCCA 1 cut(s) 21
MscI TGGCCA 1 cut(s) 21
MseI TTAA 4 cut(s) 218, 341, 363, 510
MslI CAYNNNNRTG 1 cut(s) 330
Msp20I TGGCCA 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 138
MunI CAATTG 1 cut(s) 370
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 375
NlaIII CATG 7 cut(s) 26, 160, 176, 335, 413, 448, 469
NmuCI GTSAC 1 cut(s) 236
NspI RCATGY 1 cut(s) 413
PagI TCATGA 1 cut(s) 465
PfeI GAWTC 3 cut(s) 427, 448, 545
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 4 cut(s) 218, 341, 363, 510
ScrFI CCNGG 1 cut(s) 138
SetI ASST 5 cut(s) 90, 104, 226, 397, 544
SfaNI GCATC 2 cut(s) 485, 523
SmiMI CAYNNNNRTG 1 cut(s) 330
Sse9I AATT 7 cut(s) 4, 28, 215, 262, 267, 364, 370
SsiI CCGC 1 cut(s) 525
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 3 cut(s) 51, 276, 322
TaqI TCGA 1 cut(s) 208
TasI AATT 7 cut(s) 4, 28, 215, 262, 267, 364, 370
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 3 cut(s) 427, 448, 545
Tru1I TTAA 4 cut(s) 218, 341, 363, 510
Tru9I TTAA 4 cut(s) 218, 341, 363, 510
TseFI GTSAC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 9 cut(s) 17, 81, 228, 314, 320, 326, 327, 360, 372
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 413
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.