FvH4_2g24401

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000252
Physical Location & Seq
Reverse (-)
19932134 .. 19933319
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24401.t1

Sequence Viewer

Length: 849 bp
ATGGAACAATCGTCCGACGAATCGGAGAACAATAGTCTCAATAATGATCCAGCAACAACAGATAATCAAGAAAATGAGGTGGAAGAAATAATACAAGAGCCTGTTGTTGACATGAGTTTTAATACTATTGATGAGGCATATGAATATTATAGAAAATATGGGAAGCAGTCAGGATTTCCTGTGAAAAAGAGAATATCAAGAAAGGGAGATGACGGGGACGTAAACTATATTACTATTTCATGTGGTAGACCTGGAAAATTTAAAAGTAAGTCAAGTAACTCTCTAAAGCCTCATCCAAGTGTGAAGACGGATTGCAAGGCACTTGTTAGACTTGGATTGAACAAGAGTTACAACTCAATTGTTGTTGAAGCTCAAGGACATGAGAATGTGCCATTTTTGGAAAAAGATGCTCGAAATCACATTGAAAAAATTAGGCGATTGCGGCTGAAAGAAGTTGATGCTACTGCAGCAGATGCAAGGAGTAGGGCGGCATACCGTGAATTTGGCGATGTTGTTACATTTGACACTACTTATTTGACAAATAAGTATGAAATGCCCTTTGCTCCTTTTGTGGGGGTCAATCATCATGGGCAATCAATATTGCATGGATGTGGATTGATTTCAAGTGAAGATACAGAGACATTTGTTTGGTTGTTCAAGTCTTGGCTAGCATGCATGTCTGGGAATGCTCCTAGTGGAATAATTACTGACCAAGATAGAGCCATGAGAAATGCCATTGAGATTGTCTTTCCAAATACTAGGCACCGTTGGTGCTTGTGGCATATATTGAAGAAGATTCCTGAAAAGCTTAAAGGATATACAGAATATGAATCTCAACTACCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

283

Amino Acids

32.11

Weight (kDa)

6.27

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 48 - 123 1.6e-07 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 157 - 254 4.2e-06 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 171 - 265 4.4e-37 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 762
AccI GTMKAC 1 cut(s) 247
AciI CCGC 2 cut(s) 442, 488
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 2 cut(s) 257, 500
AfiI CCNNNNNNNGG 1 cut(s) 572
AgsI TTSAA 6 cut(s) 340, 368, 425, 624, 658, 790
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 2 cut(s) 371, 808
AluI AGCT 2 cut(s) 371, 808
Alw26I GTCTC 2 cut(s) 41, 632
AlwI GGATC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 2 cut(s) 257, 500
AsuNHI GCTAGC 1 cut(s) 667
BanI GGYRCC 1 cut(s) 762
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
BbsI GAAGAC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 479
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 2 cut(s) 41, 632
BfaI CTAG 3 cut(s) 668, 693, 759
BfmI CTRYAG 1 cut(s) 465
BisI GCNGC 3 cut(s) 443, 468, 489
BlsI GCNGC 3 cut(s) 444, 469, 490
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 764
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 3 cut(s) 397, 448, 463
BmtI GCTAGC 1 cut(s) 671
BpiI GAAGAC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 572
BseBI CCWGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 292, 614
BseLI CCNNNNNNNGG 1 cut(s) 572
BseXI GCAGC 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 762
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 2 cut(s) 41, 632
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 691
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 2 cut(s) 442, 488
BspLI GGNNCC 1 cut(s) 764
BspMAI CTGCAG 1 cut(s) 469
BspOI GCTAGC 1 cut(s) 671
BspPI GGATC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 762
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 497, 767
BstAPI GCANNNNNTGC 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 669, 673
BstF5I GGATG 2 cut(s) 292, 614
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 2 cut(s) 41, 632
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 3 cut(s) 442, 467, 473
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 2 cut(s) 675, 679
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 465
BstV1I GCAGC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 311
BtgZI GCGATG 1 cut(s) 522
BtsCI GGATG 2 cut(s) 292, 614
Cac8I GCNNGC 2 cut(s) 669, 673
CviAII CATG 8 cut(s) 112, 240, 380, 587, 605, 672, 676, 724
CviJI RGCY 7 cut(s) 100, 289, 371, 445, 667, 722, 808
CviKI_1 RGCY 7 cut(s) 100, 289, 371, 445, 667, 722, 808
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 677
FaeI CATG 8 cut(s) 115, 243, 383, 590, 608, 675, 679, 727
FaqI GGGAC 1 cut(s) 230
FatI CATG 8 cut(s) 111, 239, 379, 586, 604, 671, 675, 723
FauNDI CATATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 443, 468, 489
FokI GGATG 2 cut(s) 279, 621
Fsp4HI GCNGC 3 cut(s) 443, 468, 489
FspBI CTAG 3 cut(s) 668, 693, 759
GluI GCNGC 3 cut(s) 443, 468, 489
Hin1II CATG 8 cut(s) 115, 243, 383, 590, 608, 675, 679, 727
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 3 cut(s) 20, 796, 830
Hpy166II GTNNAC 3 cut(s) 109, 223, 248
Hpy188I TCNGA 2 cut(s) 16, 25
Hpy188III TCNNGA 4 cut(s) 68, 171, 198, 800
Hpy8I GTNNAC 3 cut(s) 109, 223, 248
Hpy99I CGWCG 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 497, 767
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 5 cut(s) 315, 467, 476, 604, 675
HpyF10VI GCNNNNNNNGC 3 cut(s) 442, 467, 473
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 8 cut(s) 115, 243, 383, 590, 608, 675, 679, 727
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 2 cut(s) 568, 694
LpnPI CCDG 8 cut(s) 63, 114, 156, 192, 237, 264, 666, 813
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 3 cut(s) 397, 448, 463
MaeI CTAG 3 cut(s) 668, 693, 759
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 3 cut(s) 275, 347, 514
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 5 cut(s) 95, 316, 641, 802, 805
MfeI CAATTG 1 cut(s) 357
MluCI AATT 5 cut(s) 257, 357, 429, 500, 702
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 3 cut(s) 70, 127, 300
Mph1103I ATGCAT 1 cut(s) 677
MseI TTAA 3 cut(s) 120, 261, 810
MslI CAYNNNNRTG 3 cut(s) 297, 384, 609
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 691
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 3 cut(s) 442, 467, 473
NdeI CATATG 1 cut(s) 139
NdeII GATC 1 cut(s) 46
NheI GCTAGC 1 cut(s) 667
NlaIII CATG 8 cut(s) 115, 243, 383, 590, 608, 675, 679, 727
NlaIV GGNNCC 1 cut(s) 764
NsiI ATGCAT 1 cut(s) 677
NspI RCATGY 2 cut(s) 675, 679
PaeI GCATGC 1 cut(s) 675
PctI GAATGC 1 cut(s) 691
PfeI GAWTC 3 cut(s) 20, 796, 830
PkrI GCNGC 3 cut(s) 444, 469, 490
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 764
PsrI GAACNNNNNNTAC 2 cut(s) 332, 364
PstI CTGCAG 1 cut(s) 469
RseI CAYNNNNRTG 3 cut(s) 297, 384, 609
SaqAI TTAA 3 cut(s) 120, 261, 810
SatI GCNGC 3 cut(s) 443, 468, 489
Sau3AI GATC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 252
SetI ASST 6 cut(s) 81, 222, 253, 373, 810, 844
SfaNI GCATC 3 cut(s) 397, 448, 463
SfcI CTRYAG 1 cut(s) 465
SmiMI CAYNNNNRTG 3 cut(s) 297, 384, 609
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
SphI GCATGC 1 cut(s) 675
Sse9I AATT 5 cut(s) 257, 357, 429, 500, 702
SsiI CCGC 2 cut(s) 442, 488
SspI AATATT 2 cut(s) 146, 600
SspMI CTAG 3 cut(s) 668, 693, 759
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 497, 767
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 412
TasI AATT 5 cut(s) 257, 357, 429, 500, 702
TauI GCSGC 2 cut(s) 445, 491
TfiI GAWTC 3 cut(s) 20, 796, 830
Tru1I TTAA 3 cut(s) 120, 261, 810
Tru9I TTAA 3 cut(s) 120, 261, 810
TseI GCWGC 1 cut(s) 467
TspDTI ATGAA 4 cut(s) 156, 228, 564, 843
TspGWI ACGGA 1 cut(s) 323
XapI RAATTY 2 cut(s) 257, 500
XceI RCATGY 2 cut(s) 675, 679
XmiI GTMKAC 1 cut(s) 247
XspI CTAG 3 cut(s) 668, 693, 759
Zsp2I ATGCAT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.