Rorug07G0275000

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000252
Physical Location & Seq
Reverse (-)
26238171 .. 26243919
5749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0275000.1

Sequence Viewer

Length: 1197 bp
ATGCTGCGGACGGCGACTATTCCTGTGCTTCCCCGCCTACCCATTCCCTTCTTCTCCTTAACAAGGTCTGTTCCGACCAAAATGAGCTCAACCCAATCACCAATCAAACTCCCAAGATTTGTTTCTGTTGAAGACAGTGGCATCTCTTCTCTAACCAAACCTGATGGTATCAGGTTTAGTCTTGTCTCGTATAACATTTTGGCTCAGGCGTATGTGAAGAGCTCCTTGTTTCCCCACTCTCCATCTTCTTGTCTCAAGTGGAAAGCCCGCTCACAGGCAATTTTGAGTGTTCTCAAGAACCTTGGAGTCGACTTTCTCTGCCTACAGGAAGTTGATGAGTACGAGAGCTTTTACAAAGGAAATATGGAGAGCAGTGGTTATTCCAGTACCTACATTCAGAGAAGTGGGCAAAAGCGTGACGGATGTGGAATTTTTTATAAGCATAACATGGCAGAGTTGGTGTTAGAGGATATTATAGATTACAATGATCTTGTAAACTCAACTCAAGAGGGAAACGTTCTGGATGATGATAAACAATATGACAAGGACGCTATTGCAAGCAAAGATCCTGGATCCAAAAATGGTTCAAAATCAAAAAGCACTCAGGATCGTGGAGATCCTAATGATCCCCGTGTCAGACTAAAACGTGATTGTGTAGGACTTATAGCAGCATTCAAGCTTAAAAATCCTTCACAAAATGTTGTTATTGTGGCAAACACACACATTTACTGGGATCCAGAGTGGGCAGACGTTAAGCTTGCACAAGCTAAATATCTACTGTCACGCTTAGCTCGATTTAAAAAGTTGGTATCAGATAAGTTTGAGTGCACCCCATCATTAATTGTAGCTGGTGACTTCAATTCAACCCCAGGCAATAAGGTTTATCAGTATCTTATTTCCGGCAACTCTTCATCTGCACCAACGCTTGATGTTGTTGAAGATCTGCCTATTCCTTTGTGCAGTGTCTACGGTTCTACAAGGGGTGAACCACCTTTTACGAATTACACCCCTGGCTTCACAGGCACACTGGATTATGTATTCTTTTCCCCTAGTGACAACATACAACCAGTCAGTTTCCTTGAGCTTCCAGAACCAGAATCCTCTGATATTGATGGAGGATTACCAAACTATAATCACCCAAGCGACCATTTACCAATTGGTGCTGAGTTTGTGATATCCCGGGAATATATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

398

Amino Acids

44.13

Weight (kDa)

5.66

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 63 - 383 2.8e-19 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AccBSI CCGCTC 1 cut(s) 270
AccI GTMKAC 2 cut(s) 309, 966
AciI CCGC 3 cut(s) 7, 34, 268
AclI AACGTT 1 cut(s) 516
AclWI GGATC 8 cut(s) 560, 567, 580, 611, 615, 620, 728, 741
AcsI RAATTY 1 cut(s) 429
AfaI GTAC 2 cut(s) 341, 388
AfiI CCNNNNNNNGG 2 cut(s) 63, 274
AgsI TTSAA 6 cut(s) 131, 588, 676, 859, 864, 938
AjnI CCWGG 3 cut(s) 568, 868, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AluBI AGCT 9 cut(s) 87, 222, 348, 679, 757, 767, 791, 848, 1084
AluI AGCT 9 cut(s) 87, 222, 348, 679, 757, 767, 791, 848, 1084
Alw21I GWGCWC 3 cut(s) 89, 224, 830
Alw26I GTCTC 2 cut(s) 190, 257
Alw44I GTGCAC 1 cut(s) 826
AlwI GGATC 8 cut(s) 560, 567, 580, 611, 615, 620, 728, 741
Ama87I CYCGRG 1 cut(s) 1179
ApaLI GTGCAC 1 cut(s) 826
ApeKI GCWGC 2 cut(s) 4, 668
ApoI RAATTY 1 cut(s) 429
AseI ATTAAT 1 cut(s) 839
Asp700I GAANNNNTTC 1 cut(s) 1188
AsuC2I CCSGG 2 cut(s) 1180, 1181
AsuHPI GGTGA 4 cut(s) 90, 863, 995, 1127
AvaI CYCGRG 1 cut(s) 1179
BaeGI GKGCMC 1 cut(s) 830
BamHI GGATCC 2 cut(s) 572, 733
BanII GRGCYC 2 cut(s) 89, 224
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 3 cut(s) 89, 224, 830
BbvI GCAGC 1 cut(s) 680
BccI CCATC 4 cut(s) 158, 250, 841, 1106
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 3 cut(s) 570, 870, 1011
BcnI CCSGG 2 cut(s) 1180, 1181
BcoDI GTCTC 2 cut(s) 190, 257
BfaI CTAG 1 cut(s) 1050
BfmI CTRYAG 1 cut(s) 323
BglII AGATCT 1 cut(s) 940
BisI GCNGC 2 cut(s) 5, 669
BlpI GCTNAGC 1 cut(s) 787
BlsI GCNGC 2 cut(s) 6, 670
Bme1390I CCNGG 5 cut(s) 570, 870, 1011, 1180, 1181
BmeT110I CYCGRG 1 cut(s) 1179
BmiI GGNNCC 2 cut(s) 574, 735
BmrFI CCNGG 5 cut(s) 570, 870, 1011, 1180, 1181
BmrI ACTGGG 1 cut(s) 739
BmsI GCATC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 739
BpiI GAAGAC 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 204
Bpu1102I GCTNAGC 1 cut(s) 787
BpuEI CTTGAG 4 cut(s) 239, 278, 489, 1100
BpuMI CCSGG 2 cut(s) 1180, 1181
BsaJI CCNNGG 4 cut(s) 301, 868, 1009, 1179
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 274
Bse1I ACTGG 4 cut(s) 384, 734, 1032, 1067
BseBI CCWGG 3 cut(s) 570, 870, 1011
BseDI CCNNGG 4 cut(s) 301, 868, 1009, 1179
BseGI GGATG 2 cut(s) 428, 529
BseLI CCNNNNNNNGG 2 cut(s) 63, 274
BseMII CTCAG 3 cut(s) 218, 617, 1155
BseNI ACTGG 4 cut(s) 384, 734, 1032, 1067
BseSI GKGCMC 1 cut(s) 830
BseXI GCAGC 1 cut(s) 680
BsgI GTGCAG 2 cut(s) 900, 979
BsiHKAI GWGCWC 3 cut(s) 89, 224, 830
BsiHKCI CYCGRG 1 cut(s) 1179
BsiSI CCGG 2 cut(s) 900, 1180
BslI CCNNNNNNNGG 2 cut(s) 63, 274
BsmAI GTCTC 2 cut(s) 190, 257
BsmI GAATGC 1 cut(s) 671
BsoBI CYCGRG 1 cut(s) 1179
Bsp1286I GDGCHC 3 cut(s) 89, 224, 830
Bsp143I GATC 8 cut(s) 487, 565, 572, 607, 616, 625, 733, 940
Bsp1720I GCTNAGC 1 cut(s) 787
BspACI CCGC 3 cut(s) 7, 34, 268
BspCNI CTCAG 3 cut(s) 217, 616, 1156
BspLI GGNNCC 2 cut(s) 574, 735
BspPI GGATC 8 cut(s) 560, 567, 580, 611, 615, 620, 728, 741
BspQI GCTCTTC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 270
BsrI ACTGG 4 cut(s) 384, 734, 1032, 1067
BssECI CCNNGG 4 cut(s) 301, 868, 1009, 1179
BssMI GATC 8 cut(s) 487, 565, 572, 607, 616, 625, 733, 940
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 3 cut(s) 570, 870, 1011
Bst4CI ACNGT 3 cut(s) 137, 780, 971
Bst6I CTCTTC 3 cut(s) 151, 212, 913
BstC8I GCNNGC 3 cut(s) 268, 559, 759
BstDEI CTNAG 4 cut(s) 204, 603, 787, 1164
BstENI CCTNNNNNAGG 1 cut(s) 61
BstF5I GGATG 2 cut(s) 428, 529
BstKTI GATC 8 cut(s) 490, 568, 575, 610, 619, 628, 736, 943
BstMAI GTCTC 2 cut(s) 190, 257
BstMBI GATC 8 cut(s) 487, 565, 572, 607, 616, 625, 733, 940
BstMWI GCNNNNNNNGC 1 cut(s) 1020
BstNI CCWGG 3 cut(s) 570, 870, 1011
BstSCI CCNGG 5 cut(s) 568, 868, 1009, 1178, 1179
BstSFI CTRYAG 1 cut(s) 323
BstSLI GKGCMC 1 cut(s) 830
BstV1I GCAGC 1 cut(s) 680
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 5 cut(s) 565, 572, 616, 733, 940
BstYI RGATCY 5 cut(s) 565, 572, 616, 733, 940
BtsCI GGATG 2 cut(s) 428, 529
BtsI GCAGTG 2 cut(s) 379, 967
BtsIMutI CAGTG 4 cut(s) 142, 379, 967, 1025
Cac8I GCNNGC 3 cut(s) 268, 559, 759
Cfr9I CCCGGG 1 cut(s) 1179
CseI GACGC 1 cut(s) 557
Csp6I GTAC 2 cut(s) 340, 387
CviAII CATG 1 cut(s) 448
CviQI GTAC 2 cut(s) 340, 387
DdeI CTNAG 4 cut(s) 204, 603, 787, 1164
DpnI GATC 8 cut(s) 489, 567, 574, 609, 618, 627, 735, 942
DpnII GATC 8 cut(s) 487, 565, 572, 607, 616, 625, 733, 940
DraI TTTAAA 1 cut(s) 799
Eam1104I CTCTTC 3 cut(s) 151, 212, 913
EarI CTCTTC 3 cut(s) 151, 212, 913
Ecl136II GAGCTC 2 cut(s) 87, 222
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 2 cut(s) 89, 224
Eco32I GATATC 1 cut(s) 1176
Eco53kI GAGCTC 2 cut(s) 87, 222
Eco88I CYCGRG 1 cut(s) 1179
EcoICRI GAGCTC 2 cut(s) 87, 222
EcoNI CCTNNNNNAGG 1 cut(s) 61
EcoRII CCWGG 3 cut(s) 568, 868, 1009
EcoRV GATATC 1 cut(s) 1176
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 2 cut(s) 89, 224
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 1 cut(s) 451
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 1 cut(s) 447
FauI CCCGC 2 cut(s) 41, 275
FblI GTMKAC 2 cut(s) 309, 966
Fnu4HI GCNGC 2 cut(s) 5, 669
FokI GGATG 2 cut(s) 435, 536
FriOI GRGCYC 2 cut(s) 89, 224
Fsp4HI GCNGC 2 cut(s) 5, 669
FspBI CTAG 1 cut(s) 1050
GluI GCNGC 2 cut(s) 5, 669
HapII CCGG 2 cut(s) 900, 1180
HgaI GACGC 1 cut(s) 557
Hin1II CATG 1 cut(s) 451
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 2 cut(s) 677, 755
HinfI GANTC 2 cut(s) 306, 1097
HpaII CCGG 2 cut(s) 900, 1180
HphI GGTGA 4 cut(s) 90, 863, 995, 1127
Hpy166II GTNNAC 5 cut(s) 310, 496, 828, 967, 986
Hpy188I TCNGA 5 cut(s) 75, 399, 638, 814, 1105
Hpy188III TCNNGA 6 cut(s) 295, 506, 521, 605, 737, 1088
Hpy8I GTNNAC 5 cut(s) 310, 496, 828, 967, 986
HpyAV CCTTC 2 cut(s) 58, 699
HpyCH4III ACNGT 3 cut(s) 137, 780, 971
HpyCH4IV ACGT 3 cut(s) 516, 646, 750
HpyCH4V TGCA 5 cut(s) 557, 761, 828, 917, 960
HpyF10VI GCNNNNNNNGC 1 cut(s) 1020
HpyF3I CTNAG 4 cut(s) 204, 603, 787, 1164
HpySE526I ACGT 3 cut(s) 516, 646, 750
Hsp92II CATG 1 cut(s) 451
Kzo9I GATC 8 cut(s) 487, 565, 572, 607, 616, 625, 733, 940
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 1 cut(s) 680
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 1050
MaeII ACGT 3 cut(s) 516, 646, 750
MaeIII GTNAC 4 cut(s) 416, 780, 851, 1052
MalI GATC 8 cut(s) 489, 567, 574, 609, 618, 627, 735, 942
MbiI CCGCTC 1 cut(s) 270
MboI GATC 8 cut(s) 487, 565, 572, 607, 616, 625, 733, 940
MboII GAAGA 7 cut(s) 43, 138, 143, 229, 237, 900, 950
MfeI CAATTG 1 cut(s) 1155
MflI RGATCY 5 cut(s) 565, 572, 616, 733, 940
MhlI GDGCHC 3 cut(s) 89, 224, 830
MluCI AATT 6 cut(s) 279, 429, 840, 859, 1000, 1155
MlyI GAGTC 1 cut(s) 315
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 4 cut(s) 460, 502, 1109, 1111
MroXI GAANNNNTTC 1 cut(s) 1188
MseI TTAA 5 cut(s) 59, 681, 753, 798, 839
MspI CCGG 2 cut(s) 900, 1180
MspR9I CCNGG 5 cut(s) 570, 870, 1011, 1180, 1181
MunI CAATTG 1 cut(s) 1155
Mva1269I GAATGC 1 cut(s) 671
MvaI CCWGG 3 cut(s) 570, 870, 1011
MwoI GCNNNNNNNGC 1 cut(s) 1020
NciI CCSGG 2 cut(s) 1180, 1181
NdeII GATC 8 cut(s) 487, 565, 572, 607, 616, 625, 733, 940
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 2 cut(s) 574, 735
NmuCI GTSAC 4 cut(s) 416, 780, 851, 1052
PciSI GCTCTTC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 790
PctI GAATGC 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 1188
PfeI GAWTC 1 cut(s) 1097
PfoI TCCNGGA 1 cut(s) 568
PkrI GCNGC 2 cut(s) 6, 670
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
PshBI ATTAAT 1 cut(s) 839
PsiI TTATAA 1 cut(s) 438
Psp124BI GAGCTC 2 cut(s) 89, 224
Psp1406I AACGTT 1 cut(s) 516
Psp6I CCWGG 3 cut(s) 568, 868, 1009
PspGI CCWGG 3 cut(s) 568, 868, 1009
PspN4I GGNNCC 2 cut(s) 574, 735
PsuI RGATCY 5 cut(s) 565, 572, 616, 733, 940
RsaI GTAC 2 cut(s) 341, 388
RsaNI GTAC 2 cut(s) 340, 387
SacI GAGCTC 2 cut(s) 89, 224
SalI GTCGAC 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 5 cut(s) 59, 681, 753, 798, 839
SatI GCNGC 2 cut(s) 5, 669
Sau3AI GATC 8 cut(s) 487, 565, 572, 607, 616, 625, 733, 940
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 5 cut(s) 570, 870, 1011, 1180, 1181
SduI GDGCHC 3 cut(s) 89, 224, 830
SfaNI GCATC 1 cut(s) 150
SfcI CTRYAG 1 cut(s) 323
SmaI CCCGGG 1 cut(s) 1181
SmlI CTYRAG 4 cut(s) 254, 293, 504, 1079
SmoI CTYRAG 4 cut(s) 254, 293, 504, 1079
Sse9I AATT 6 cut(s) 279, 429, 840, 859, 1000, 1155
SsiI CCGC 3 cut(s) 7, 34, 268
SspMI CTAG 1 cut(s) 1050
SstI GAGCTC 2 cut(s) 89, 224
StyD4I CCNGG 5 cut(s) 568, 868, 1009, 1178, 1179
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 3 cut(s) 137, 780, 971
TaiI ACGT 3 cut(s) 519, 649, 753
TaqI TCGA 2 cut(s) 309, 793
TasI AATT 6 cut(s) 279, 429, 840, 859, 1000, 1155
TfiI GAWTC 1 cut(s) 1097
Tru1I TTAA 5 cut(s) 59, 681, 753, 798, 839
Tru9I TTAA 5 cut(s) 59, 681, 753, 798, 839
TscAI CASTG 4 cut(s) 142, 379, 967, 1032
TseFI GTSAC 4 cut(s) 416, 780, 851, 1052
TseI GCWGC 2 cut(s) 4, 668
Tsp45I GTSAC 4 cut(s) 416, 780, 851, 1052
TspDTI ATGAA 1 cut(s) 900
TspGWI ACGGA 1 cut(s) 435
TspMI CCCGGG 1 cut(s) 1179
TspRI CASTG 4 cut(s) 142, 379, 967, 1032
VneI GTGCAC 1 cut(s) 826
VspI ATTAAT 1 cut(s) 839
XagI CCTNNNNNAGG 1 cut(s) 61
XapI RAATTY 1 cut(s) 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 1154
XmaI CCCGGG 1 cut(s) 1179
XmiI GTMKAC 2 cut(s) 309, 966
XmnI GAANNNNTTC 1 cut(s) 1188
XspI CTAG 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.