RLG00000011576

Protein FAR1-RELATED SEQUENCE 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000252
Physical Location & Seq
Reverse (-)
10640116 .. 10642909
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011576

Sequence Viewer

Length: 1122 bp
ATGGAGATGGAAGAAGTTTGTCTCAATAGTGAGCCAGTGTTTGATGAAGGCGATGAGTATGACTTGGAGGGAGGGCATGATGTTGGAATTGGGGAAACACAAAGTAAACAGGTCCCCCCACAACCTACTGTCGGTTTGGAGTTTGACTCTTTTGATGAAGCCTATGATTTCTACAATGTCTATGGTAAAGAACAGGGATTTGGCATCAGAGTGAGCAATTCATGGTTCAGGTCAAAGAGAAAAGAGCGGTATAGAGCAAAATTAAGTTGCAGCAGTGCAGGTTTCAAGAAAAAGAGTGAAGCCAACAATCCGAGACCTGAGACAAGGACTGGTTGTCCTGCAATGATAGTTATCAAGATGGTGGACTCCCAAAGGTGGAGAATAGTTGAATTAGAGCTTCAACACAACCATCAGGTGAGTCCACAGATCAAAAGGTTTTACAAGTCGCATAAGAAAATGATCATTGCTGCCAAAAATGCACAACCACAGCCAAATCCTGTTACAGAAGTTCATACTATCAAGCTGTATCGAACACCTGCTATGGATGCTGGGTGCAATGGATGCTCAACTTTAAGTGAAACTGAAGTGCAACTGTGTAAAGTGTACACCAAGGATATTTTCAAGAGGTTCCAGTTGGAGGTTGAGGGAATGTACTCCTGCTTCAATACAAGGCAGGTCAATGTCAATGGGCCTATAATAACTTACATAGTTAAAGAACGAGTTGAAGTTGAAGGAAATGAGAAGGAAGTCAGATGCTATGAGGTTTTGTATGAGACTACACAAGTGGATATCCGATGTATCTGCAGTTTGTTCAACTACAAAGGGTATCTGTGCAGGCATGCATTAAACGTTCTAAATTACAACGGTGTGGAAGTAATCCCGTCCCGATACATTTTGCCACGGTGGAGTAAAGATTTCAAGCGCAGGTATCTTCTGCATCAAGGATCAAGTAATATTGATGTGTATGACCCAGCATACTGGCATAATCATCTTTATAATCTCGCCCTTCCAGTTGCGGAAGAAGGGGCACAATCTGAGGAACACTATAAGACGACGTTGCAAGCATTGGAGGAGTTGTTGAACAAGTTTCATCTTGTAGAGGATACCCTCAATGCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

374

Amino Acids

43.16

Weight (kDa)

6.16

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 56 - 140 2.3e-24 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 996
AarI CACCTGC 1 cut(s) 544
Acc36I ACCTGC 4 cut(s) 269, 544, 664, 915
AccBSI CCGCTC 1 cut(s) 247
AciI CCGC 2 cut(s) 247, 1016
AclI AACGTT 1 cut(s) 849
AclWI GGATC 1 cut(s) 952
AcuI CTGAAG 1 cut(s) 603
AfaI GTAC 2 cut(s) 605, 653
AfiI CCNNNNNNNGG 3 cut(s) 131, 375, 637
AhdI GACNNNNNGTC 1 cut(s) 333
AjuI GAANNNNNNNTTGG 4 cut(s) 183, 215, 602, 634
AluBI AGCT 2 cut(s) 397, 523
AluI AGCT 2 cut(s) 397, 523
Alw26I GTCTC 4 cut(s) 26, 307, 314, 767
AlwI GGATC 1 cut(s) 952
AoxI GGCC 1 cut(s) 689
ApeKI GCWGC 2 cut(s) 270, 467
AspLEI GCGC 1 cut(s) 924
AspS9I GGNCC 2 cut(s) 112, 689
AsuHPI GGTGA 1 cut(s) 427
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 1030
BarI GAAGNNNNNNTAC 2 cut(s) 644, 676
BbvI GCAGC 2 cut(s) 282, 454
BccI CCATC 2 cut(s) 352, 417
BcgI CGANNNNNNTGC 2 cut(s) 783, 817
BciVI GTATCC 1 cut(s) 1096
BclI TGATCA 1 cut(s) 459
BcoDI GTCTC 4 cut(s) 26, 307, 314, 767
BfmI CTRYAG 1 cut(s) 802
BfuAI ACCTGC 4 cut(s) 269, 544, 664, 915
BfuI GTATCC 1 cut(s) 1096
BisI GCNGC 2 cut(s) 271, 468
BlsI GCNGC 2 cut(s) 272, 469
Bme18I GGWCC 1 cut(s) 112
BmeRI GACNNNNNGTC 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 112, 689
BmiI GGNNCC 2 cut(s) 114, 629
BmsI GCATC 5 cut(s) 213, 535, 551, 743, 946
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BsaBI GATNNNNATC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 2 cut(s) 609, 899
BsaXI ACNNNNNCTCC 2 cut(s) 1061, 1091
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 375, 637
Bse1I ACTGG 5 cut(s) 35, 334, 631, 983, 1010
Bse3DI GCAATG 3 cut(s) 348, 462, 562
Bse8I GATNNNNATC 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 609, 899
BseGI GGATG 2 cut(s) 550, 566
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 3 cut(s) 131, 375, 637
BseMI GCAATG 3 cut(s) 348, 462, 562
BseMII CTCAG 2 cut(s) 309, 1026
BseNI ACTGG 5 cut(s) 35, 334, 631, 983, 1010
BseRI GAGGAG 1 cut(s) 1085
BseSI GKGCMC 1 cut(s) 1030
BseXI GCAGC 2 cut(s) 282, 454
BseYI CCCAGC 2 cut(s) 548, 970
BsgI GTGCAG 2 cut(s) 297, 853
BshFI GGCC 1 cut(s) 691
BslFI GGGAC 2 cut(s) 98, 868
BslI CCNNNNNNNGG 3 cut(s) 131, 375, 637
BsmAI GTCTC 4 cut(s) 26, 307, 314, 767
BsmFI GGGAC 2 cut(s) 98, 868
BsnI GGCC 1 cut(s) 691
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 1030
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 3 cut(s) 426, 459, 944
BspACI CCGC 2 cut(s) 247, 1016
BspANI GGCC 1 cut(s) 691
BspCNI CTCAG 2 cut(s) 310, 1027
BspLI GGNNCC 2 cut(s) 114, 629
BspMAI CTGCAG 1 cut(s) 806
BspMI ACCTGC 4 cut(s) 269, 544, 664, 915
BspPI GGATC 1 cut(s) 952
BspTNI GGTCTC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 247
BsrDI GCAATG 3 cut(s) 348, 462, 562
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 5 cut(s) 35, 334, 631, 983, 1010
BssECI CCNNGG 2 cut(s) 609, 899
BssMI GATC 3 cut(s) 426, 459, 944
BssT1I CCWWGG 1 cut(s) 609
Bst4CI ACNGT 4 cut(s) 130, 594, 866, 903
BstAPI GCANNNNNTGC 1 cut(s) 561
BstAUI TGTACA 1 cut(s) 603
BstC8I GCNNGC 3 cut(s) 836, 840, 1062
BstDEI CTNAG 2 cut(s) 318, 1035
BstDSI CCRYGG 1 cut(s) 899
BstF5I GGATG 2 cut(s) 550, 566
BstHHI GCGC 1 cut(s) 924
BstKTI GATC 3 cut(s) 429, 462, 947
BstMAI GTCTC 4 cut(s) 26, 307, 314, 767
BstMBI GATC 3 cut(s) 426, 459, 944
BstMWI GCNNNNNNNGC 3 cut(s) 476, 545, 561
BstNSI RCATGY 1 cut(s) 842
BstSFI CTRYAG 1 cut(s) 802
BstSLI GKGCMC 1 cut(s) 1030
BstV1I GCAGC 2 cut(s) 282, 454
BstXI CCANNNNNNTGG 1 cut(s) 978
BsuI GTATCC 1 cut(s) 1096
BsuRI GGCC 1 cut(s) 691
BtgI CCRYGG 1 cut(s) 899
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 550, 566
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 42, 280
BveI ACCTGC 4 cut(s) 269, 544, 664, 915
Cac8I GCNNGC 3 cut(s) 836, 840, 1062
CfoI GCGC 1 cut(s) 924
Cfr13I GGNCC 2 cut(s) 112, 689
Csp6I GTAC 2 cut(s) 604, 652
CviAII CATG 3 cut(s) 77, 222, 839
CviJI RGCY 7 cut(s) 34, 161, 302, 397, 490, 523, 691
CviKI_1 RGCY 7 cut(s) 34, 161, 302, 397, 490, 523, 691
CviQI GTAC 2 cut(s) 604, 652
DdeI CTNAG 2 cut(s) 318, 1035
DpnI GATC 3 cut(s) 428, 461, 946
DpnII GATC 3 cut(s) 426, 459, 944
DriI GACNNNNNGTC 1 cut(s) 333
Eam1105I GACNNNNNGTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 609
Eco31I GGTCTC 1 cut(s) 307
Eco32I GATATC 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 603
EcoO109I RGGNCCY 1 cut(s) 112
EcoRV GATATC 1 cut(s) 790
EcoT14I CCWWGG 1 cut(s) 609
EcoT22I ATGCAT 1 cut(s) 844
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 3 cut(s) 80, 225, 842
FaqI GGGAC 2 cut(s) 98, 868
FatI CATG 3 cut(s) 76, 221, 838
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 271, 468
FokI GGATG 2 cut(s) 557, 573
Fsp4HI GCNGC 2 cut(s) 271, 468
GlaI GCGC 1 cut(s) 923
GluI GCNGC 2 cut(s) 271, 468
GsaI CCCAGC 2 cut(s) 552, 974
HaeIII GGCC 1 cut(s) 691
HhaI GCGC 1 cut(s) 924
Hin1II CATG 3 cut(s) 80, 225, 842
Hin6I GCGC 1 cut(s) 922
HinP1I GCGC 1 cut(s) 922
HinfI GANTC 3 cut(s) 146, 365, 418
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 5 cut(s) 107, 364, 422, 604, 606
Hpy188I TCNGA 5 cut(s) 209, 312, 752, 794, 1036
Hpy188III TCNNGA 4 cut(s) 286, 355, 622, 885
Hpy8I GTNNAC 5 cut(s) 107, 364, 422, 604, 606
Hpy99I CGWCG 1 cut(s) 1057
HpyAV CCTTC 5 cut(s) 41, 725, 736, 1016, 1016
HpyCH4III ACNGT 4 cut(s) 130, 594, 866, 903
HpyCH4IV ACGT 2 cut(s) 849, 1055
HpyF10VI GCNNNNNNNGC 3 cut(s) 476, 545, 561
HpyF3I CTNAG 2 cut(s) 318, 1035
HpySE526I ACGT 2 cut(s) 849, 1055
Hsp92II CATG 3 cut(s) 80, 225, 842
HspAI GCGC 1 cut(s) 922
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 3 cut(s) 426, 459, 944
Lsp1109I GCAGC 2 cut(s) 282, 454
LweI GCATC 5 cut(s) 213, 535, 551, 743, 946
MaeII ACGT 2 cut(s) 849, 1055
MaeIII GTNAC 1 cut(s) 499
MalI GATC 3 cut(s) 428, 461, 946
MbiI CCGCTC 1 cut(s) 247
MboI GATC 3 cut(s) 426, 459, 944
MboII GAAGA 3 cut(s) 23, 923, 1031
MhlI GDGCHC 1 cut(s) 1030
MluCI AATT 5 cut(s) 87, 217, 260, 389, 856
MlyI GAGTC 3 cut(s) 140, 359, 427
MmeI TCCRAC 2 cut(s) 64, 615
Mph1103I ATGCAT 1 cut(s) 844
MseI TTAA 4 cut(s) 263, 572, 711, 845
MslI CAYNNNNRTG 1 cut(s) 209
MwoI GCNNNNNNNGC 3 cut(s) 476, 545, 561
NdeII GATC 3 cut(s) 426, 459, 944
NlaIII CATG 3 cut(s) 80, 225, 842
NlaIV GGNNCC 2 cut(s) 114, 629
NsiI ATGCAT 1 cut(s) 844
NspI RCATGY 1 cut(s) 842
PaeI GCATGC 1 cut(s) 842
PaqCI CACCTGC 1 cut(s) 544
PkrI GCNGC 2 cut(s) 272, 469
PleI GAGTC 3 cut(s) 140, 359, 426
PpsI GAGTC 3 cut(s) 140, 359, 426
PpuMI RGGWCCY 1 cut(s) 112
PsiI TTATAA 1 cut(s) 996
Psp1406I AACGTT 1 cut(s) 849
Psp5II RGGWCCY 1 cut(s) 112
PspFI CCCAGC 2 cut(s) 548, 970
PspN4I GGNNCC 2 cut(s) 114, 629
PspPI GGNCC 2 cut(s) 112, 689
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 806
RsaI GTAC 2 cut(s) 605, 653
RsaNI GTAC 2 cut(s) 604, 652
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 4 cut(s) 263, 572, 711, 845
SatI GCNGC 2 cut(s) 271, 468
Sau3AI GATC 3 cut(s) 426, 459, 944
Sau96I GGNCC 2 cut(s) 112, 689
SchI GAGTC 3 cut(s) 140, 359, 427
SduI GDGCHC 1 cut(s) 1030
SfaNI GCATC 5 cut(s) 213, 535, 551, 743, 946
SfcI CTRYAG 1 cut(s) 802
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 209
SphI GCATGC 1 cut(s) 842
Sse9I AATT 5 cut(s) 87, 217, 260, 389, 856
SsiI CCGC 2 cut(s) 247, 1016
SspI AATATT 1 cut(s) 955
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 4 cut(s) 130, 594, 866, 903
TaiI ACGT 2 cut(s) 852, 1058
TaqI TCGA 1 cut(s) 529
TasI AATT 5 cut(s) 87, 217, 260, 389, 856
TatI WGTACW 2 cut(s) 603, 651
Tru1I TTAA 4 cut(s) 263, 572, 711, 845
Tru9I TTAA 4 cut(s) 263, 572, 711, 845
TscAI CASTG 2 cut(s) 42, 280
TseI GCWGC 2 cut(s) 270, 467
TspDTI ATGAA 5 cut(s) 60, 171, 210, 500, 1079
TspRI CASTG 2 cut(s) 42, 280
VpaK11BI GGWCC 1 cut(s) 112
XceI RCATGY 1 cut(s) 842
Zsp2I ATGCAT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.