Rmu_sc0005198.1_g000004

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005198.1
OG0000252
Physical Location & Seq
Forward (+)
17366 .. 17848
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005198.1_g000004.1.cds

Sequence Viewer

Length: 483 bp
atgtctaatcatgctcctaatgcaatcattatagatcaagataaagcaatgcaaagagcaattgagattatctttcctaatacacgacataggtggtgcttatggcatataatgaagaaggttccagaaaaattgaaaggctacaaagagaaatacgagtctatcaagttttcttttcaaaatattatttacgattcactaagtggtgatgaatttgaagattgttggaagctattcattgaaaagtataacctacagaataatgaatggttactgggattatatgaggagaggcgaagatgggtacctagttttgtgaaagacactttctgggcaggcatgtctacaactcagcgtcgcgagagcatgaatgcattctttgatgggtatgtaaactcaaagactacattaaagcagtttgtggaacaatatgagaatgctttacgagataaagttgagaaagagaatcttgcagatttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

160

Amino Acids

19.34

Weight (kDa)

6.84

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 344
AccII CGCG 1 cut(s) 360
AcsI RAATTY 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 203
AfaI GTAC 1 cut(s) 306
AgsI TTSAA 4 cut(s) 136, 179, 218, 242
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 2 cut(s) 233, 374
Asp718I GGTACC 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 218
BanI GGYRCC 1 cut(s) 304
BccI CCATC 2 cut(s) 294, 377
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 123, 306
BmrI ACTGGG 1 cut(s) 284
BmuI ACTGGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 54
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 360
BshNI GGYRCC 1 cut(s) 304
BsmI GAATGC 3 cut(s) 374, 376, 442
Bsp143I GATC 1 cut(s) 34
Bsp68I TCGCGA 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 364
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 2 cut(s) 123, 306
BspT107I GGYRCC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 279
BssMI GATC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 200, 351
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 254
BstUI CGCG 1 cut(s) 360
BtuMI TCGCGA 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 337
CseI GACGC 1 cut(s) 344
Csp6I GTAC 1 cut(s) 305
CviAII CATG 3 cut(s) 11, 340, 367
CviJI RGCY 2 cut(s) 141, 232
CviKI_1 RGCY 2 cut(s) 141, 232
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 2 cut(s) 200, 351
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 376
FaeI CATG 3 cut(s) 14, 343, 370
FalI AAGNNNNNCTT 1 cut(s) 453
FatI CATG 3 cut(s) 10, 339, 366
FblI GTMKAC 1 cut(s) 344
FspBI CTAG 1 cut(s) 309
HgaI GACGC 1 cut(s) 344
Hin1II CATG 3 cut(s) 14, 343, 370
HinfI GANTC 3 cut(s) 158, 194, 466
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 345, 394
Hpy188III TCNNGA 3 cut(s) 38, 125, 359
Hpy8I GTNNAC 2 cut(s) 345, 394
Hpy99I CGWCG 1 cut(s) 360
HpyAV CCTTC 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 23, 52, 374, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 200, 351
Hsp92II CATG 3 cut(s) 14, 343, 370
KpnI GGTACC 1 cut(s) 308
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 4 cut(s) 138, 260, 316, 321
MaeI CTAG 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 270
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 3 cut(s) 127, 230, 309
MfeI CAATTG 1 cut(s) 60
MluCI AATT 3 cut(s) 60, 131, 212
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 2 cut(s) 280, 285
Mph1103I ATGCAT 1 cut(s) 376
MroXI GAANNNNTTC 2 cut(s) 233, 374
MseI TTAA 1 cut(s) 410
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 3 cut(s) 374, 376, 442
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 1 cut(s) 34
NlaIII CATG 3 cut(s) 14, 343, 370
NlaIV GGNNCC 2 cut(s) 123, 306
NruI TCGCGA 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 343
PctI GAATGC 3 cut(s) 374, 376, 442
PdmI GAANNNNTTC 2 cut(s) 233, 374
PfeI GAWTC 2 cut(s) 194, 466
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 123, 306
RruI TCGCGA 1 cut(s) 360
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 410
Sau3AI GATC 1 cut(s) 34
SchI GAGTC 1 cut(s) 167
SetI ASST 5 cut(s) 95, 123, 234, 255, 310
SfcI CTRYAG 1 cut(s) 254
Sse9I AATT 3 cut(s) 60, 131, 212
SspI AATATT 1 cut(s) 184
SspMI CTAG 1 cut(s) 309
TasI AATT 3 cut(s) 60, 131, 212
TfiI GAWTC 2 cut(s) 194, 466
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TspDTI ATGAA 5 cut(s) 128, 225, 226, 279, 383
XapI RAATTY 1 cut(s) 212
XceI RCATGY 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 344
XmnI GAANNNNTTC 2 cut(s) 233, 374
XspI CTAG 1 cut(s) 309
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.