RLG00000020625

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000252
Physical Location & Seq
Reverse (-)
66883982 .. 66884755
774 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020625

Sequence Viewer

Length: 774 bp
ATGTACAATATTGAGAAAGATTATCATGATGCTTACACAAATGCAAAGTTCAAAGAGTTTCAGAAAGAGTTAGAAGGAAAGATGCATTGCTGCATATCATCATCTGAAAGGAATGGTACAATTATAGATATCATTGTGGATGAGGATGTAAAGATTGGTACAAAAATGAGACGAGTCCAATTCATAGTTCATTTCAATGAGGACAAGTGTGAGGTAAATTGTGTATGTCGTCTATTTGAGTTCAGAGGAATATTATGTCGGCATGCAATTGTGGTTCTAATTCATAAAAATATGGCCGGCGTTCCAGAGAAATATATTTTAAAACGATGGACAGCAAGTGTAAAACGAAGTCATAGCAAAGTGAAAATAAGCTATGGCAACTGGACTGCCAAGGCTGAAACACAAAGAAATGATAGGATGTGTAATTTGTTTTATGAGGTGGCAGACTTAGCAGATGGCAAAGAAGAAGATTGTAACATGGTGATGGGGATATTAAATGATCTGAAAATGAAATTGACTCAAAGTAAAGTTGATTGTGAAAGGAAAGGAGATAATACTGAGTTGGTTGAGAAGACAGAACTTGATAGAAAAATTTCAGAGAATGGTTGCGAAGTACTTGATCCATTATCTGTTCGAAATAAAGGTCGTCCTCCAATCAACCGAAAACAATCTACGACCGAGCAAATTATTCGAAAAAGAAAAGAAAGTGAAGCTGCAAAAATATCTAGTGATAAAAATAAATTCCAGGTTAAACTACATTTCTATATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

258

Amino Acids

29.92

Weight (kDa)

8.89

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 66 - 97 8.5e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 614
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 591, 740
AfaI GTAC 4 cut(s) 5, 118, 160, 615
AgsI TTSAA 2 cut(s) 52, 196
AjnI CCWGG 1 cut(s) 744
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 2 cut(s) 372, 713
AluI AGCT 2 cut(s) 372, 713
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 1 cut(s) 614
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 2 cut(s) 90, 713
ApoI RAATTY 2 cut(s) 591, 740
ArsI GACNNNNNNTTYG 2 cut(s) 628, 660
AseI ATTAAT 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 592
AsuHPI GGTGA 1 cut(s) 493
AsuII TTCGAA 2 cut(s) 634, 691
BbsI GAAGAC 1 cut(s) 578
BbvI GCAGC 2 cut(s) 77, 700
BccI CCATC 3 cut(s) 321, 449, 478
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 1 cut(s) 746
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 726
BisI GCNGC 2 cut(s) 91, 714
BlsI GCNGC 2 cut(s) 92, 715
BmcAI AGTACT 1 cut(s) 615
Bme1390I CCNGG 1 cut(s) 746
BmrFI CCNGG 1 cut(s) 746
BmsI GCATC 2 cut(s) 19, 72
BpiI GAAGAC 1 cut(s) 578
Bpu14I TTCGAA 2 cut(s) 634, 691
BsaJI CCNNGG 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 3 cut(s) 145, 151, 423
BseMI GCAATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 2 cut(s) 77, 700
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 678
BsiSI CCGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 163
BsmBI CGTCTC 1 cut(s) 163
BsnI GGCC 1 cut(s) 296
Bsp119I TTCGAA 2 cut(s) 634, 691
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 499, 619
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 550
BspHI TCATGA 1 cut(s) 25
BspPI GGATC 1 cut(s) 614
BspT104I TTCGAA 2 cut(s) 634, 691
BsrDI GCAATG 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 2 cut(s) 499, 619
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 746
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 2 cut(s) 634, 691
BstC8I GCNNGC 2 cut(s) 264, 298
BstDEI CTNAG 2 cut(s) 448, 558
BstF5I GGATG 3 cut(s) 145, 151, 423
BstKTI GATC 2 cut(s) 502, 622
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 2 cut(s) 499, 619
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 1 cut(s) 746
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 744
BstV1I GCAGC 2 cut(s) 77, 700
BstV2I GAAGAC 1 cut(s) 578
BsuRI GGCC 1 cut(s) 296
BtsCI GGATG 3 cut(s) 145, 151, 423
Cac8I GCNNGC 2 cut(s) 264, 298
CciI TCATGA 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 296
Csp6I GTAC 4 cut(s) 4, 117, 159, 614
CviAII CATG 3 cut(s) 26, 263, 478
CviJI RGCY 4 cut(s) 296, 372, 395, 713
CviKI_1 RGCY 4 cut(s) 296, 372, 395, 713
CviQI GTAC 4 cut(s) 4, 117, 159, 614
DdeI CTNAG 2 cut(s) 448, 558
DpnI GATC 2 cut(s) 501, 621
DpnII GATC 2 cut(s) 499, 619
DraI TTTAAA 1 cut(s) 321
EaeI YGGCCR 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 390
Eco32I GATATC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 744
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 3 cut(s) 29, 266, 481
FatI CATG 3 cut(s) 25, 262, 477
Fnu4HI GCNGC 2 cut(s) 91, 714
FokI GGATG 3 cut(s) 152, 158, 430
Fsp4HI GCNGC 2 cut(s) 91, 714
FspBI CTAG 1 cut(s) 726
GluI GCNGC 2 cut(s) 91, 714
HaeIII GGCC 1 cut(s) 296
HapII CCGG 1 cut(s) 297
Hin1II CATG 3 cut(s) 29, 266, 481
HinfI GANTC 2 cut(s) 174, 517
HpaII CCGG 1 cut(s) 297
HphI GGTGA 1 cut(s) 493
Hpy188I TCNGA 5 cut(s) 63, 106, 245, 504, 598
Hpy188III TCNNGA 2 cut(s) 26, 305
HpyAV CCTTC 1 cut(s) 68
HpyCH4V TGCA 5 cut(s) 44, 85, 93, 266, 716
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 2 cut(s) 448, 558
Hsp92II CATG 3 cut(s) 29, 266, 481
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Kzo9I GATC 2 cut(s) 499, 619
LpnPI CCDG 5 cut(s) 310, 318, 367, 731, 758
Lsp1109I GCAGC 2 cut(s) 77, 700
LweI GCATC 2 cut(s) 19, 72
MaeI CTAG 1 cut(s) 726
MaeIII GTNAC 1 cut(s) 473
MalI GATC 2 cut(s) 501, 621
MboI GATC 2 cut(s) 499, 619
MboII GAAGA 3 cut(s) 476, 479, 583
MfeI CAATTG 1 cut(s) 267
MlyI GAGTC 2 cut(s) 183, 511
MnlI CCTC 6 cut(s) 136, 193, 205, 239, 430, 660
Mph1103I ATGCAT 1 cut(s) 87
MroNI GCCGGC 1 cut(s) 296
MroXI GAANNNNTTC 1 cut(s) 592
MseI TTAA 4 cut(s) 320, 494, 750, 768
MslI CAYNNNNRTG 2 cut(s) 195, 482
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 746
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 746
MwoI GCNNNNNNNGC 1 cut(s) 449
NaeI GCCGGC 1 cut(s) 298
NdeII GATC 2 cut(s) 499, 619
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 3 cut(s) 29, 266, 481
NsiI ATGCAT 1 cut(s) 87
NspI RCATGY 1 cut(s) 266
NspV TTCGAA 2 cut(s) 634, 691
PaeI GCATGC 1 cut(s) 266
PagI TCATGA 1 cut(s) 25
PdiI GCCGGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 592
PkrI GCNGC 2 cut(s) 92, 715
PleI GAGTC 2 cut(s) 182, 511
PpsI GAGTC 2 cut(s) 182, 511
PshBI ATTAAT 1 cut(s) 768
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
RsaI GTAC 4 cut(s) 5, 118, 160, 615
RsaNI GTAC 4 cut(s) 4, 117, 159, 614
RseI CAYNNNNRTG 2 cut(s) 195, 482
SaqAI TTAA 4 cut(s) 320, 494, 750, 768
SatI GCNGC 2 cut(s) 91, 714
Sau3AI GATC 2 cut(s) 499, 619
ScaI AGTACT 1 cut(s) 615
SchI GAGTC 2 cut(s) 183, 511
ScrFI CCNGG 1 cut(s) 746
SetI ASST 6 cut(s) 216, 374, 441, 646, 715, 750
SfaNI GCATC 2 cut(s) 19, 72
SfuI TTCGAA 2 cut(s) 634, 691
SmiMI CAYNNNNRTG 2 cut(s) 195, 482
SphI GCATGC 1 cut(s) 266
SspI AATATT 2 cut(s) 10, 252
SspMI CTAG 1 cut(s) 726
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 1 cut(s) 390
TaqI TCGA 2 cut(s) 634, 691
TaqII GACCGA 1 cut(s) 692
TatI WGTACW 2 cut(s) 3, 613
Tru1I TTAA 4 cut(s) 320, 494, 750, 768
Tru9I TTAA 4 cut(s) 320, 494, 750, 768
TseI GCWGC 2 cut(s) 90, 713
TspDTI ATGAA 4 cut(s) 172, 179, 272, 524
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 2 cut(s) 591, 740
XceI RCATGY 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 592
XspI CTAG 1 cut(s) 726
ZrmI AGTACT 1 cut(s) 615
Zsp2I ATGCAT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.