Rh6BG173300

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000252
Physical Location & Seq
Forward (+)
28590046 .. 28590554
509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG173300.1

Sequence Viewer

Length: 246 bp
ATGCAGAAGAATTTTGATGACATTAAGGAATTAGCATATGATTCTGAAGATAAGTGCATGATTGCTATGACTTGGTTGCACAACCTAAAAGATGAACTATCCAAACATGATTCCAAGAACATTGGTGCTTGTAGTGGTGCTGAACCAACGCCTAGCTCACCTATCAATAGATCTGGGAGTGACGTTGATGGTACTTCAAATCCAGGGGTCAAGATCAAGAGGTCGCCCGTCGTTAAAGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

81

Amino Acids

8.86

Weight (kDa)

6.71

Isoelectric Point (pI)

60.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 193
AgsI TTSAA 1 cut(s) 198
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
ApoI RAATTY 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 150
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 204
BfaI CTAG 1 cut(s) 153
BglII AGATCT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 203
Bsp143I GATC 2 cut(s) 170, 213
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 170, 213
Bst2UI CCWGG 1 cut(s) 204
BstKTI GATC 2 cut(s) 173, 216
BstMBI GATC 2 cut(s) 170, 213
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
Csp6I GTAC 1 cut(s) 192
CviAII CATG 2 cut(s) 58, 107
CviJI RGCY 1 cut(s) 156
CviKI_1 RGCY 1 cut(s) 156
CviQI GTAC 1 cut(s) 192
DpnI GATC 2 cut(s) 172, 215
DpnII GATC 2 cut(s) 170, 213
Eco57I CTGAAG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 61, 110
FaiI YATR 5 cut(s) 37, 39, 59, 68, 108
FatI CATG 2 cut(s) 57, 106
FauNDI CATATG 1 cut(s) 37
FspBI CTAG 1 cut(s) 153
Hin1II CATG 2 cut(s) 61, 110
HinfI GANTC 2 cut(s) 41, 110
HphI GGTGA 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 2 cut(s) 211, 217
Hpy99I CGWCG 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 4, 57, 79
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 2 cut(s) 61, 110
Kzo9I GATC 2 cut(s) 170, 213
LpnPI CCDG 3 cut(s) 159, 189, 216
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 172, 215
MboI GATC 2 cut(s) 170, 213
MboII GAAGA 2 cut(s) 19, 59
MflI RGATCY 1 cut(s) 170
MluCI AATT 2 cut(s) 10, 29
MnlI CCTC 1 cut(s) 213
MseI TTAA 2 cut(s) 24, 234
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
NdeI CATATG 1 cut(s) 37
NdeII GATC 2 cut(s) 170, 213
NlaIII CATG 2 cut(s) 61, 110
NmuCI GTSAC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 41, 110
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 24, 234
Sau3AI GATC 2 cut(s) 170, 213
ScrFI CCNGG 1 cut(s) 204
SetI ASST 5 cut(s) 87, 158, 163, 186, 224
Sse9I AATT 2 cut(s) 10, 29
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 202
TaiI ACGT 1 cut(s) 186
TasI AATT 2 cut(s) 10, 29
TfiI GAWTC 2 cut(s) 41, 110
Tru1I TTAA 2 cut(s) 24, 234
Tru9I TTAA 2 cut(s) 24, 234
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 108
XapI RAATTY 1 cut(s) 10
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.