MD08G1156300.v1.1

Protein FAR1-RELATED SEQUENCE 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000252
Physical Location & Seq
Reverse (-)
17403648 .. 17406011
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1156300.v1.1.491

Sequence Viewer

Length: 297 bp
ATGTGGGTTCCAGTGTACGTAAAAGACACATTTTTCGCAGGAATGATCCCTATCCGAGAAAACGAGAGCTTGACTCCATTTTTTGATGGTTATGTACATACGCATATGTCGTTTAAGGAATTTGTTGATAAGTACGATCTAGCGCTACATAGGAAGCGCATCAAAGAGGTGGCGGCAGATGTGGAGTCGAGAAGTTCAATCGTTGAACTAAAAACGAGATGTAATTTCGAAGAACAGCTACGGAAGGTATATACGAGGTTGAGGGCATGCACTCCTGTTTCAACACAAGGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

99

Amino Acids

11.56

Weight (kDa)

9.0

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 282
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 40
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 3 cut(s) 17, 96, 134
AfeI AGCGCT 1 cut(s) 144
AgsI TTSAA 3 cut(s) 198, 206, 282
AluBI AGCT 2 cut(s) 69, 238
AluI AGCT 2 cut(s) 69, 238
AlwI GGATC 1 cut(s) 40
Aor51HI AGCGCT 1 cut(s) 144
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AspLEI GCGC 2 cut(s) 145, 159
AsuII TTCGAA 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
BccI CCATC 1 cut(s) 80
BfaI CTAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 282
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 9
BmsI GCATC 1 cut(s) 168
BplI GAGNNNNNCTC 2 cut(s) 58, 90
Bpu14I TTCGAA 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 50
BseNI ACTGG 1 cut(s) 11
Bsp119I TTCGAA 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 94
Bsp143I GATC 2 cut(s) 45, 136
BspACI CCGC 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 9
BspMI ACCTGC 1 cut(s) 282
BspPI GGATC 1 cut(s) 40
BspT104I TTCGAA 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 94
BsrI ACTGG 1 cut(s) 11
BssMI GATC 2 cut(s) 45, 136
BstAUI TGTACA 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 19
BstBI TTCGAA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 2 cut(s) 145, 159
BstKTI GATC 2 cut(s) 48, 139
BstMBI GATC 2 cut(s) 45, 136
BstNSI RCATGY 1 cut(s) 270
BstSNI TACGTA 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 2 cut(s) 145, 159
Csp6I GTAC 3 cut(s) 16, 95, 133
CviAII CATG 1 cut(s) 267
CviJI RGCY 2 cut(s) 69, 238
CviKI_1 RGCY 2 cut(s) 69, 238
CviQI GTAC 3 cut(s) 16, 95, 133
DpnI GATC 2 cut(s) 47, 138
DpnII GATC 2 cut(s) 45, 136
Eco105I TACGTA 1 cut(s) 19
Eco47III AGCGCT 1 cut(s) 144
FaeI CATG 1 cut(s) 270
FaiI YATR 8 cut(s) 93, 99, 105, 107, 150, 250, 252, 268
FatI CATG 1 cut(s) 266
FauNDI CATATG 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 140
GlaI GCGC 2 cut(s) 144, 158
GluI GCNGC 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 146
HhaI GCGC 2 cut(s) 145, 159
Hin1II CATG 1 cut(s) 270
Hin6I GCGC 2 cut(s) 143, 157
HinP1I GCGC 2 cut(s) 143, 157
HinfI GANTC 2 cut(s) 73, 185
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 270
HspAI GCGC 2 cut(s) 143, 157
Kzo9I GATC 2 cut(s) 45, 136
LpnPI CCDG 4 cut(s) 24, 24, 277, 288
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 18
MalI GATC 2 cut(s) 47, 138
MboI GATC 2 cut(s) 45, 136
MboII GAAGA 1 cut(s) 242
MluCI AATT 2 cut(s) 119, 223
MlyI GAGTC 2 cut(s) 67, 194
MnlI CCTC 3 cut(s) 160, 249, 255
MseI TTAA 1 cut(s) 114
NdeI CATATG 1 cut(s) 105
NdeII GATC 2 cut(s) 45, 136
NlaIII CATG 1 cut(s) 270
NlaIV GGNNCC 1 cut(s) 9
NspI RCATGY 1 cut(s) 270
NspV TTCGAA 1 cut(s) 228
PaeI GCATGC 1 cut(s) 270
PaqCI CACCTGC 1 cut(s) 282
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 2 cut(s) 67, 193
PpsI GAGTC 2 cut(s) 67, 193
Ppu21I YACGTR 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 9
RsaI GTAC 3 cut(s) 17, 96, 134
RsaNI GTAC 3 cut(s) 16, 95, 133
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 45, 136
SchI GAGTC 2 cut(s) 67, 194
SetI ASST 7 cut(s) 21, 71, 171, 240, 249, 260, 296
SfaNI GCATC 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 228
SnaBI TACGTA 1 cut(s) 19
SphI GCATGC 1 cut(s) 270
Sse9I AATT 2 cut(s) 119, 223
SsiI CCGC 1 cut(s) 173
SspMI CTAG 1 cut(s) 140
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 188, 228
TasI AATT 2 cut(s) 119, 223
TatI WGTACW 1 cut(s) 94
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 18
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 270
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.