Rh6DG159100

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000252
Physical Location & Seq
Forward (+)
23742320 .. 23742739
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG159100.1

Sequence Viewer

Length: 420 bp
ATGCAAGTGCCTAGTGTTGAAATGAGTTTTGATTCTATTGATGAGGCATATGACTATTATAGAAAATATGGGAAGCAATTGGGATTCGCAGTGAGAAAGAGAACATCAAGAAAGGGAGATGATGGGAACACAAAATATATAACTATTTCATGCGGTCGAGCCGGAAAATTTAAAAGCAAGTCTAGTAACTCTCTAAAGTCTCATCCAAGTGTGAAGACTGATTGCAAGGCACTTATTAGACTTGGTAAATCCCTTGATGGAAAGTGGAAAATCAAATCTACAAAGCTTGAGCATAACCATGGTTTGAGTCCAAGAAAATCTCGTTATTTCTCAACCAATAGTGAACTAAGTTCATCGATAAAAAAGAGGCTTGAACTAAATGATGTTGCTAGAATAGGGTTAAAAAGAGTTATAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

139

Amino Acids

15.74

Weight (kDa)

10.13

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 18 - 103 2.7e-17 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
AciI CCGC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 167
AgsI TTSAA 2 cut(s) 20, 374
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 221
BccI CCATC 2 cut(s) 116, 251
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 3 cut(s) 12, 183, 390
BpiI GAAGAC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 298
BseCI ATCGAT 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 202
Bsh1285I CGRYCG 1 cut(s) 157
BshVI ATCGAT 1 cut(s) 356
BsiEI CGRYCG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 1 cut(s) 153
BspDI ATCGAT 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 347
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 204
BstMCI CGRYCG 1 cut(s) 157
BstV2I GAAGAC 1 cut(s) 221
Bsu15I ATCGAT 1 cut(s) 356
BsuTUI ATCGAT 1 cut(s) 356
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
ClaI ATCGAT 1 cut(s) 356
CviAII CATG 2 cut(s) 150, 299
CviJI RGCY 3 cut(s) 161, 286, 370
CviKI_1 RGCY 3 cut(s) 161, 286, 370
DdeI CTNAG 1 cut(s) 347
DraI TTTAAA 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 2 cut(s) 153, 302
FatI CATG 2 cut(s) 149, 298
FauNDI CATATG 1 cut(s) 49
FokI GGATG 1 cut(s) 189
FspBI CTAG 3 cut(s) 12, 183, 390
HapII CCGG 1 cut(s) 162
Hin1II CATG 2 cut(s) 153, 302
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 3 cut(s) 32, 84, 307
HpaII CCGG 1 cut(s) 162
Hpy166II GTNNAC 1 cut(s) 344
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 1 cut(s) 344
HpyCH4V TGCA 2 cut(s) 4, 225
HpyF3I CTNAG 1 cut(s) 347
Hsp92II CATG 2 cut(s) 153, 302
LpnPI CCDG 1 cut(s) 175
MaeI CTAG 3 cut(s) 12, 183, 390
MaeIII GTNAC 1 cut(s) 185
MboII GAAGA 1 cut(s) 226
MfeI CAATTG 1 cut(s) 77
MluCI AATT 2 cut(s) 77, 167
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 2 cut(s) 37, 360
MseI TTAA 3 cut(s) 171, 401, 418
MslI CAYNNNNRTG 2 cut(s) 207, 297
MspI CCGG 1 cut(s) 162
MunI CAATTG 1 cut(s) 77
NcoI CCATGG 1 cut(s) 298
NdeI CATATG 1 cut(s) 49
NlaIII CATG 2 cut(s) 153, 302
PfeI GAWTC 2 cut(s) 32, 84
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
PsiI TTATAA 1 cut(s) 413
RseI CAYNNNNRTG 2 cut(s) 207, 297
SaqAI TTAA 3 cut(s) 171, 401, 418
SchI GAGTC 1 cut(s) 316
SetI ASST 1 cut(s) 288
SmiMI CAYNNNNRTG 2 cut(s) 207, 297
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 77, 167
SsiI CCGC 1 cut(s) 153
SspMI CTAG 3 cut(s) 12, 183, 390
StyI CCWWGG 1 cut(s) 298
TaqI TCGA 2 cut(s) 157, 356
TasI AATT 2 cut(s) 77, 167
TfiI GAWTC 2 cut(s) 32, 84
Tru1I TTAA 3 cut(s) 171, 401, 418
Tru9I TTAA 3 cut(s) 171, 401, 418
TscAI CASTG 1 cut(s) 96
TspDTI ATGAA 2 cut(s) 138, 342
TspRI CASTG 1 cut(s) 96
XapI RAATTY 1 cut(s) 167
XspI CTAG 3 cut(s) 12, 183, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.