Prupe.6G116200_v2.0.a1

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000252
Physical Location & Seq
Reverse (-)
8466058 .. 8466762
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G116200.1

Sequence Viewer

Length: 345 bp
ATGAGTGAAGAAAATGATGAGGTTGAGATTGGTGAGACTGGACTGGAAAATACAATGAGCCCGGAAGAAACAACACAAGAACCTAAGGTAAATATGATTTTTAACACAGCTGATGAGGTGCTTGATTTTTATAAAAAATATGCAAATCGAGTAGGTTTCCAAATGAAGAAGAGATCATCAAAGAAAGGAGATTGTGGGGAGTTGAAATATGTGACTTTATCATGTTCTCGATCAGGGATCCCGCAAAGTACTGCAAGCAATGTCTTAAAGCCATATCCAAGCGTAAAATGCAATTGCAAGGCTCAAAATGCACAAGATAGTCATGGTGGTATGGATGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

115

Amino Acids

12.65

Weight (kDa)

4.91

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AciI CCGC 1 cut(s) 242
AclWI GGATC 2 cut(s) 232, 245
AfaI GTAC 1 cut(s) 250
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 2 cut(s) 232, 245
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 84
BamHI GGATCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 62
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 29
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 43, 48
Bse21I CCTNAGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 265
BseGI GGATG 1 cut(s) 340
BseMI GCAATG 1 cut(s) 265
BseNI ACTGG 2 cut(s) 43, 48
BsiSI CCGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 3 cut(s) 173, 230, 237
BspACI CCGC 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 239
BspPI GGATC 2 cut(s) 232, 245
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 2 cut(s) 43, 48
BssMI GATC 3 cut(s) 173, 230, 237
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 340
BstKTI GATC 3 cut(s) 176, 233, 240
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 3 cut(s) 173, 230, 237
BstMWI GCNNNNNNNGC 2 cut(s) 288, 308
BstSCI CCNGG 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
Bsu36I CCTNAGG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 249
CviAII CATG 2 cut(s) 222, 323
CviJI RGCY 4 cut(s) 60, 110, 271, 302
CviKI_1 RGCY 4 cut(s) 60, 110, 271, 302
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 84
DpnI GATC 3 cut(s) 175, 232, 239
DpnII GATC 3 cut(s) 173, 230, 237
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 62
Eco81I CCTNAGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 62
FaeI CATG 2 cut(s) 225, 326
FaiI YATR 8 cut(s) 95, 132, 141, 210, 223, 274, 324, 332
FatI CATG 2 cut(s) 221, 322
FauI CCCGC 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 62
HapII CCGG 1 cut(s) 62
Hin1II CATG 2 cut(s) 225, 326
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 228
HpyCH4V TGCA 5 cut(s) 143, 254, 291, 297, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 308
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 2 cut(s) 225, 326
Kzo9I GATC 3 cut(s) 173, 230, 237
LpnPI CCDG 4 cut(s) 24, 29, 75, 219
MaeIII GTNAC 1 cut(s) 211
MalI GATC 3 cut(s) 175, 232, 239
MboI GATC 3 cut(s) 173, 230, 237
MboII GAAGA 4 cut(s) 20, 77, 178, 181
MfeI CAATTG 1 cut(s) 292
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 292
MnlI CCTC 2 cut(s) 13, 109
MseI TTAA 3 cut(s) 102, 266, 343
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 292
MwoI GCNNNNNNNGC 2 cut(s) 288, 308
NciI CCSGG 1 cut(s) 62
NdeII GATC 3 cut(s) 173, 230, 237
NlaIII CATG 2 cut(s) 225, 326
NlaIV GGNNCC 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 211
PsiI TTATAA 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 239
PsuI RGATCY 1 cut(s) 237
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 102, 266, 343
Sau3AI GATC 3 cut(s) 173, 230, 237
ScaI AGTACT 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 62
SetI ASST 6 cut(s) 24, 85, 90, 112, 120, 157
Sse9I AATT 1 cut(s) 292
SsiI CCGC 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 60
TaqI TCGA 2 cut(s) 148, 229
TasI AATT 1 cut(s) 292
TatI WGTACW 1 cut(s) 248
Tru1I TTAA 3 cut(s) 102, 266, 343
Tru9I TTAA 3 cut(s) 102, 266, 343
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 179
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.