Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000252

Physical Location & Seq

Genomic Coordinates Reverse (-)

81779941 .. 81787525

Gene Structure 7585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG586300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGACCTTTTCAGTCTCGGCTTCTTCAGCCCAAGACCAAGTACGTTTCCGCTTTGCTCCTTCTCCTACTGGGAATCTCCACGTTGGTGGAGCCAGAACTGCCCTCTTCAATTACCTCTTTGCCAGGTCCAATGGAGGGAAGTTTGTTTTTAGAATTGAAGACACTGATTTGGAGAGGTCTACTAAGGAGTCCAAGGAGGCTGTGTTGCAGGATCTCTCTTGGCTTGGTCTTGATTGGGATGAAGGAAGTCCTTACACATATAGGTTTTGTGTTCCAAAGGAAGGAAGTCTGAAAATCAATGATCTCATTAGAGGGGAGGTCAGTTGGAACTTGGACACTCTTGGAGATTTTGTAATTATGAGAAGCAATGGGCAACCGGTGTACAATTTTTGTGTCACAGTTGATGATGCTAGCATGGCTATCTCACATGTTATTAGAAGTAAGTTATCAAAAATGCATGGAGCAACTTCAGAGGGCCAGTGGATTATGCACCACTGGAGCGACAGTGATTGCGTCAAGATATTGAAGAATTGTCGAAAGGCAATACTGGAGAGCAGCGGCAAGGTGATTATTGTGGACGTTGTTCTAGAGCCAAATGGTGATGGCATGTTCGACGACACAGGCTTGACAAAGGACAATGGTGATGGCCCTATTTTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

tRNA-synt_1c

Protein Analysis

220

Amino Acids

24.44

Weight (kDa)

5.36

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	13 - 83	3.7e-30	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c	PF00749	81 - 148	4.5e-15	tRNA synthetases class I (E and Q), catalytic domain
Methyltransf_2	PF00891	160 - 206	3.6e-09	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80010
fragaria_vesca	FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica	MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica	Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis	pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis	RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata	RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora	Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa	Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha	Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana	Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	2 cut(s)	49, 558
AclWI	GGATC	1 cut(s)	219
AcuI	CTGAAG	2 cut(s)	9, 453
AfaI	GTAC	2 cut(s)	42, 383
AfiI	CCNNNNNNNGG	2 cut(s)	135, 281
AflIII	ACRYGT	1 cut(s)	427
AgeI	ACCGGT	1 cut(s)	376
AgsI	TTSAA	4 cut(s)	109, 158, 526, 659
AjnI	CCWGG	1 cut(s)	122
AleI	CACNNNNGTG	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	219
AoxI	GGCC	2 cut(s)	475, 646
ApeKI	GCWGC	1 cut(s)	555
AsiGI	ACCGGT	1 cut(s)	376
AspS9I	GGNCC	3 cut(s)	126, 475, 647
AsuHPI	GGTGA	3 cut(s)	577, 611, 653
AsuNHI	GCTAGC	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	567
BccI	CCATC	2 cut(s)	596, 638
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	2 cut(s)	411, 587
BisI	GCNGC	2 cut(s)	556, 559
BlsI	GCNGC	2 cut(s)	557, 560
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	3 cut(s)	126, 475, 647
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	124
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	397
BmtI	GCTAGC	1 cut(s)	414
BmuI	ACTGGG	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	2 cut(s)	517, 569
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	6 cut(s)	188, 218, 336, 366, 490, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 281
Bse118I	RCCGGY	1 cut(s)	376
Bse1I	ACTGG	4 cut(s)	73, 478, 500, 552
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	135, 281
BseMI	GCAATG	1 cut(s)	373
BseNI	ACTGG	4 cut(s)	73, 478, 500, 552
BseXI	GCAGC	1 cut(s)	567
BshFI	GGCC	2 cut(s)	477, 648
BshTI	ACCGGT	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	135, 281
BsmAI	GTCTC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	477, 648
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	211, 301
BspACI	CCGC	2 cut(s)	49, 558
BspANI	GGCC	2 cut(s)	477, 648
BspLI	GGNNCC	1 cut(s)	91
BspOI	GCTAGC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	376
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	4 cut(s)	73, 478, 500, 552
BssAI	RCCGGY	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	211, 301
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	400, 506
Bst6I	CTCTTC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	214, 304
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	2 cut(s)	211, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 98, 416
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	2 cut(s)	431, 610
BstSCI	CCNGG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	567
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	477, 648
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	4 cut(s)	162, 485, 493, 511
Cac8I	GCNNGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	376
Cfr13I	GGNCC	3 cut(s)	126, 475, 647
CseI	GACGC	1 cut(s)	502
Csp6I	GTAC	2 cut(s)	41, 382
CspAI	ACCGGT	1 cut(s)	376
CviAII	CATG	4 cut(s)	415, 428, 458, 607
CviQI	GTAC	2 cut(s)	41, 382
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	2 cut(s)	213, 303
DpnII	GATC	2 cut(s)	211, 301
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	126
Eco57I	CTGAAG	2 cut(s)	9, 453
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	4 cut(s)	418, 431, 461, 610
FaiI	YATR	8 cut(s)	259, 261, 359, 416, 429, 459, 488, 608
FatI	CATG	4 cut(s)	414, 427, 457, 606
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	556, 559
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	556, 559
FspBI	CTAG	2 cut(s)	411, 587
GluI	GCNGC	2 cut(s)	556, 559
GsuI	CTGGAG	2 cut(s)	517, 569
HaeIII	GGCC	2 cut(s)	477, 648
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	502
Hin1II	CATG	4 cut(s)	418, 431, 461, 610
HinfI	GANTC	2 cut(s)	73, 188
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	3 cut(s)	577, 611, 653
Hpy166II	GTNNAC	3 cut(s)	180, 382, 577
Hpy188I	TCNGA	2 cut(s)	291, 472
Hpy188III	TCNNGA	3 cut(s)	230, 517, 587
Hpy8I	GTNNAC	3 cut(s)	180, 382, 577
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	3 cut(s)	69, 236, 275
HpyCH4III	ACNGT	2 cut(s)	400, 506
HpyCH4IV	ACGT	3 cut(s)	43, 81, 579
HpyCH4V	TGCA	3 cut(s)	208, 457, 490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 98, 416
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	3 cut(s)	43, 81, 579
Hsp92II	CATG	4 cut(s)	418, 431, 461, 610
Kzo9I	GATC	2 cut(s)	211, 301
LmnI	GCTCC	4 cut(s)	61, 89, 461, 498
Lsp1109I	GCAGC	1 cut(s)	567
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	411, 587
MaeII	ACGT	3 cut(s)	43, 81, 579
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	2 cut(s)	213, 303
MboI	GATC	2 cut(s)	211, 301
MboII	GAAGA	4 cut(s)	15, 97, 170, 538
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	5 cut(s)	109, 153, 354, 385, 529
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	8 cut(s)	113, 125, 128, 168, 190, 305, 310, 466
Mph1103I	ATGCAT	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	558
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	3 cut(s)	26, 98, 416
NdeII	GATC	2 cut(s)	211, 301
NheI	GCTAGC	1 cut(s)	410
NlaIII	CATG	4 cut(s)	418, 431, 461, 610
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	394
NsiI	ATGCAT	1 cut(s)	459
NspI	RCATGY	2 cut(s)	431, 610
OliI	CACNNNNGTG	1 cut(s)	84
PciI	ACATGT	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	557, 560
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PscI	ACATGT	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	3 cut(s)	126, 475, 647
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	2 cut(s)	42, 383
RsaNI	GTAC	2 cut(s)	41, 382
RseI	CAYNNNNRTG	1 cut(s)	84
SatI	GCNGC	2 cut(s)	556, 559
Sau3AI	GATC	2 cut(s)	211, 301
Sau96I	GGNCC	3 cut(s)	126, 475, 647
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	397
SinI	GGWCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	5 cut(s)	109, 153, 354, 385, 529
SsiI	CCGC	2 cut(s)	49, 558
SspMI	CTAG	2 cut(s)	411, 587
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	400, 506
TaiI	ACGT	3 cut(s)	46, 84, 582
TaqI	TCGA	2 cut(s)	535, 612
TasI	AATT	5 cut(s)	109, 153, 354, 385, 529
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	1 cut(s)	73
TscAI	CASTG	4 cut(s)	169, 485, 500, 511
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	1 cut(s)	555
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	4 cut(s)	169, 485, 500, 511
VpaK11BI	GGWCC	1 cut(s)	126
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	2 cut(s)	431, 610
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	2 cut(s)	411, 587
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.