Rh6CG163800

Protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
22299134 .. 22299907
774 bp
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UTR
Exon/CDS
Intron
Rh6CG163800.1

Sequence Viewer

Length: 504 bp
ATGCAGAAGAATTTTGATGACATTAAGGAGCTAGCATATGATTCTAAAGATAAGTGCATGATTGTTATGTCTTGTTTGCATAACTTAAAGGATGAACTATCCAAACATGAGTCCAAGAACACTGGTGCTAGTGGTGGTGCTAAACTAATTCCTGGCTCACCTATCAATAGAAATGGGACTGTCAACTTTGATGGTATTTCAAATCCAAGTCAACATATACTTATTCCATTGGTAAATAGGAGAAAAGGTCGCCCACCATCTAAAAGGAAGATATCTAAGGTAGAGGAAGAGGGGTCAAAATCAAGAGGTCACCTGCCATTGAAAAAGACTGAATCTAAGAAAGAGCAAGAGGTCAAAAACAAACAAATTAGAAGAAATAATGTTTCATCCAATAAAAAGCCTAATCATGAAGGAGAAGGATTGAAGGTTTTATCACCCTCACAAAGTGATGTTAATCCAAAAAGAGTTCGTATACCATCCAAAAGATTGTTGGAAACAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

167

Amino Acids

18.72

Weight (kDa)

10.04

Isoelectric Point (pI)

62.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 321
AccI GTMKAC 1 cut(s) 472
AcsI RAATTY 1 cut(s) 10
AdeI CACNNNGTG 1 cut(s) 446
AgsI TTSAA 3 cut(s) 201, 322, 424
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
ApoI RAATTY 1 cut(s) 10
AsuHPI GGTGA 3 cut(s) 150, 302, 426
AsuNHI GCTAGC 1 cut(s) 31
BccI CCATC 3 cut(s) 185, 265, 484
BciT130I CCWGG 1 cut(s) 153
BfaI CTAG 2 cut(s) 32, 129
BfuAI ACCTGC 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 153
BmtI GCTAGC 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 453
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bse1I ACTGG 1 cut(s) 127
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 1 cut(s) 153
BseGI GGATG 3 cut(s) 97, 386, 476
BseJI GATNNNNATC 1 cut(s) 453
BseNI ACTGG 1 cut(s) 127
BslFI GGGAC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 190
BspHI TCATGA 1 cut(s) 406
BspMI ACCTGC 1 cut(s) 321
BspOI GCTAGC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 127
BssNAI GTATAC 1 cut(s) 473
Bst1107I GTATAC 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 276, 336
BstEII GGTNACC 1 cut(s) 308
BstF5I GGATG 3 cut(s) 97, 386, 476
BstNI CCWGG 1 cut(s) 153
BstPI GGTNACC 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 151
BstZ17I GTATAC 1 cut(s) 473
BtsCI GGATG 3 cut(s) 97, 386, 476
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 33
CciI TCATGA 1 cut(s) 406
CviAII CATG 3 cut(s) 58, 107, 407
CviJI RGCY 3 cut(s) 31, 156, 400
CviKI_1 RGCY 3 cut(s) 31, 156, 400
DdeI CTNAG 2 cut(s) 276, 336
DraIII CACNNNGTG 1 cut(s) 446
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco32I GATATC 1 cut(s) 273
Eco91I GGTNACC 1 cut(s) 308
EcoO65I GGTNACC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 151
EcoRV GATATC 1 cut(s) 273
FaeI CATG 3 cut(s) 61, 110, 410
FaqI GGGAC 1 cut(s) 190
FatI CATG 3 cut(s) 57, 106, 406
FauNDI CATATG 1 cut(s) 37
FblI GTMKAC 1 cut(s) 472
FokI GGATG 3 cut(s) 104, 373, 463
FspBI CTAG 2 cut(s) 32, 129
Hin1II CATG 3 cut(s) 61, 110, 410
HincII GTYRAC 2 cut(s) 184, 212
HindII GTYRAC 2 cut(s) 184, 212
HinfI GANTC 3 cut(s) 41, 110, 332
HphI GGTGA 3 cut(s) 150, 302, 426
Hpy166II GTNNAC 3 cut(s) 184, 212, 473
Hpy188III TCNNGA 2 cut(s) 303, 407
Hpy8I GTNNAC 3 cut(s) 184, 212, 473
HpyAV CCTTC 3 cut(s) 404, 410, 418
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 3 cut(s) 4, 57, 79
HpyF3I CTNAG 2 cut(s) 276, 336
Hsp92II CATG 3 cut(s) 61, 110, 410
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 4 cut(s) 108, 138, 165, 326
MaeI CTAG 2 cut(s) 32, 129
MaeIII GTNAC 1 cut(s) 308
MboII GAAGA 4 cut(s) 19, 280, 299, 384
MluCI AATT 4 cut(s) 10, 147, 366, 498
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 5 cut(s) 277, 283, 299, 343, 448
MseI TTAA 4 cut(s) 24, 86, 453, 502
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
NdeI CATATG 1 cut(s) 37
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 3 cut(s) 61, 110, 410
NmuCI GTSAC 1 cut(s) 308
PagI TCATGA 1 cut(s) 406
PaqCI CACCTGC 1 cut(s) 321
PfeI GAWTC 2 cut(s) 41, 332
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 151
PspEI GGTNACC 1 cut(s) 308
PspGI CCWGG 1 cut(s) 151
SaqAI TTAA 4 cut(s) 24, 86, 453, 502
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 153
SetI ASST 8 cut(s) 33, 163, 250, 282, 310, 315, 354, 429
Sse9I AATT 4 cut(s) 10, 147, 366, 498
SspMI CTAG 2 cut(s) 32, 129
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 181
TasI AATT 4 cut(s) 10, 147, 366, 498
TfiI GAWTC 2 cut(s) 41, 332
Tru1I TTAA 4 cut(s) 24, 86, 453, 502
Tru9I TTAA 4 cut(s) 24, 86, 453, 502
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 108, 375, 423
TspRI CASTG 1 cut(s) 127
XapI RAATTY 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 472
XspI CTAG 2 cut(s) 32, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.