Rh2BG044500

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000252
Physical Location & Seq
Forward (+)
3170652 .. 3171993
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG044500.1

Sequence Viewer

Length: 915 bp
ATGAATTCATTTTTTGATGGCCATGTCAATTCCAAGACTACCTTGAAACAGTTTGTGGAGCAATATGAAAATGCATTGAGAAGTAAGGTGGAGAAAGAGAACCATGAAGATTTCAAGTGTTTCTCATATAGTCTCCCTGGTGCAACTCATTATGACATGGAAAAACAAGCACATGATATCTACACAACTTCGAAGTTCAAAGAGTTTCGAGATGAATTAACAGATAAATATATCCTGAGGAGATGGAGGAAGGATGTGAAGAGGTGTCACACAAGGGTTAAAATTAGTTATGGTGGATGGGATGCTAGACCTGAATCACAAAGGCTTGACAAGATGCAGAAGAATTTTGATGACATTAAAGAATTAGCATACGATTCTGAAGATAAGTGCATGATTGTTATGACTTGGTTGCATAACCTAAAGGATGAACTGTCCAAACATGAGTCCAAGAATGCTAGTGCTTGTGGTGGTGCTGAACCAATGCCTGGCTCACCTATCAATAGATATGGGAGTGACGTTGATGGTATTTCAAATACAGGTCAACATATACTTACTCCATTGGTAAATAAGAGAAAAGGACGCCCACCATCTAAAAGGAAGGTTTCTAAGGTAGAAGAAGCGGTAAGAAAGAAACAGAAAAGAGAACAAAAGAACAAACGTGGTGGGAACAATACTCATGAAGAAGTAGGAGTGAAGGGGTCAAGATCAAGAGGTCGTCTGCCATTGAAGAGAAATGAATCTAAGAAAGAGCAAGAGCAAGAGGTCAAAAACAAACAAAATAGAAGAAATAAGGTTCCATCCAATAAAAAGCCTAATCATGAAGGAGAAGGATCAAAGGTTTTTTCACCCTCACAAAGTGATGTCAATCCAAAGAGAGTTCGTATACCATCAAAAAGATTGTTAGAAACAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

304

Amino Acids

35.3

Weight (kDa)

9.78

Isoelectric Point (pI)

62.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 485
AccI GTMKAC 1 cut(s) 883
AciI CCGC 1 cut(s) 620
AclWI GGATC 1 cut(s) 838
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 2 cut(s) 4, 343
AcuI CTGAAG 1 cut(s) 399
AcyI GRCGYC 1 cut(s) 580
AdeI CACNNNGTG 1 cut(s) 857
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 5 cut(s) 46, 115, 199, 531, 727
AjnI CCWGG 2 cut(s) 136, 484
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 838
AoxI GGCC 1 cut(s) 19
ApoI RAATTY 2 cut(s) 4, 343
AsuHPI GGTGA 2 cut(s) 483, 837
AsuII TTCGAA 1 cut(s) 191
AxyI CCTNAGG 1 cut(s) 236
BalI TGGCCA 1 cut(s) 21
BccI CCATC 7 cut(s) 11, 237, 291, 515, 595, 805, 895
BciT130I CCWGG 2 cut(s) 138, 486
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 2 cut(s) 306, 456
Bme1390I CCNGG 2 cut(s) 138, 486
BmiI GGNNCC 1 cut(s) 795
BmrFI CCNGG 2 cut(s) 138, 486
BmsI GCATC 2 cut(s) 292, 324
Bpu14I TTCGAA 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 864
BsaHI GRCGYC 1 cut(s) 580
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse21I CCTNAGG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 864
BseBI CCWGG 2 cut(s) 138, 486
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 5 cut(s) 259, 302, 307, 430, 797
BseJI GATNNNNATC 1 cut(s) 864
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMII CTCAG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 253
BshFI GGCC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 1 cut(s) 21
Bsp119I TTCGAA 1 cut(s) 191
Bsp143I GATC 2 cut(s) 704, 830
BspACI CCGC 1 cut(s) 620
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 228
BspHI TCATGA 2 cut(s) 676, 817
BspLI GGNNCC 1 cut(s) 795
BspPI GGATC 1 cut(s) 838
BspT104I TTCGAA 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 2 cut(s) 704, 830
BssNAI GTATAC 1 cut(s) 884
BssNI GRCGYC 1 cut(s) 580
Bst1107I GTATAC 1 cut(s) 884
Bst2UI CCWGG 2 cut(s) 138, 486
Bst4CI ACNGT 2 cut(s) 51, 432
Bst6I CTCTTC 2 cut(s) 254, 722
BstACI GRCGYC 1 cut(s) 580
BstBI TTCGAA 1 cut(s) 191
BstDEI CTNAG 3 cut(s) 236, 606, 741
BstF5I GGATG 5 cut(s) 259, 302, 307, 430, 797
BstKTI GATC 2 cut(s) 707, 833
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 704, 830
BstNI CCWGG 2 cut(s) 138, 486
BstSCI CCNGG 2 cut(s) 136, 484
BstZ17I GTATAC 1 cut(s) 884
Bsu36I CCTNAGG 1 cut(s) 236
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 5 cut(s) 259, 302, 307, 430, 797
CciI TCATGA 2 cut(s) 676, 817
CseI GACGC 1 cut(s) 588
CspCI CAANNNNNGTGG 2 cut(s) 643, 678
CviAII CATG 8 cut(s) 23, 104, 157, 173, 391, 440, 677, 818
CviJI RGCY 4 cut(s) 21, 325, 489, 811
CviKI_1 RGCY 4 cut(s) 21, 325, 489, 811
DdeI CTNAG 3 cut(s) 236, 606, 741
DpnI GATC 2 cut(s) 706, 832
DpnII GATC 2 cut(s) 704, 830
DraIII CACNNNGTG 1 cut(s) 857
EaeI YGGCCR 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 254, 722
EarI CTCTTC 2 cut(s) 254, 722
Eco32I GATATC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 399
Eco81I CCTNAGG 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 136, 484
EcoRV GATATC 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 76
FaeI CATG 8 cut(s) 26, 107, 160, 176, 394, 443, 680, 821
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 8 cut(s) 22, 103, 156, 172, 390, 439, 676, 817
FblI GTMKAC 1 cut(s) 883
FokI GGATG 5 cut(s) 266, 309, 314, 437, 784
FspBI CTAG 2 cut(s) 306, 456
HaeIII GGCC 1 cut(s) 21
HgaI GACGC 1 cut(s) 588
Hin1I GRCGYC 1 cut(s) 580
Hin1II CATG 8 cut(s) 26, 107, 160, 176, 394, 443, 680, 821
HincII GTYRAC 1 cut(s) 542
HindII GTYRAC 1 cut(s) 542
HinfI GANTC 4 cut(s) 314, 374, 443, 737
HphI GGTGA 2 cut(s) 483, 837
Hpy166II GTNNAC 2 cut(s) 542, 884
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 6 cut(s) 209, 235, 677, 702, 708, 818
Hpy8I GTNNAC 2 cut(s) 542, 884
HpyAV CCTTC 5 cut(s) 244, 592, 688, 815, 821
HpyCH4III ACNGT 2 cut(s) 51, 432
HpyCH4IV ACGT 2 cut(s) 516, 658
HpyCH4V TGCA 5 cut(s) 74, 143, 337, 390, 412
HpyF3I CTNAG 3 cut(s) 236, 606, 741
HpySE526I ACGT 2 cut(s) 516, 658
Hsp92I GRCGYC 1 cut(s) 580
Hsp92II CATG 8 cut(s) 26, 107, 160, 176, 394, 443, 680, 821
Kzo9I GATC 2 cut(s) 704, 830
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 7 cut(s) 123, 150, 248, 324, 471, 498, 522
LweI GCATC 2 cut(s) 292, 324
MaeI CTAG 2 cut(s) 306, 456
MaeII ACGT 2 cut(s) 516, 658
MaeIII GTNAC 2 cut(s) 266, 512
MalI GATC 2 cut(s) 706, 832
MboI GATC 2 cut(s) 704, 830
MboII GAAGA 8 cut(s) 119, 271, 352, 392, 626, 692, 739, 795
MlsI TGGCCA 1 cut(s) 21
MluCI AATT 7 cut(s) 4, 28, 215, 282, 343, 362, 909
MluNI TGGCCA 1 cut(s) 21
MlyI GAGTC 1 cut(s) 452
MnlI CCTC 6 cut(s) 231, 240, 255, 704, 754, 859
Mox20I TGGCCA 1 cut(s) 21
Mph1103I ATGCAT 1 cut(s) 76
MscI TGGCCA 1 cut(s) 21
MseI TTAA 4 cut(s) 218, 279, 357, 913
Msp20I TGGCCA 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 138, 486
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 2 cut(s) 138, 486
NdeII GATC 2 cut(s) 704, 830
NlaIII CATG 8 cut(s) 26, 107, 160, 176, 394, 443, 680, 821
NlaIV GGNNCC 1 cut(s) 795
NmuCI GTSAC 2 cut(s) 266, 512
NsiI ATGCAT 1 cut(s) 76
NspV TTCGAA 1 cut(s) 191
PagI TCATGA 2 cut(s) 676, 817
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 3 cut(s) 314, 374, 737
PflMI CCANNNNNTGG 1 cut(s) 485
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Psp6I CCWGG 2 cut(s) 136, 484
PspGI CCWGG 2 cut(s) 136, 484
PspN4I GGNNCC 1 cut(s) 795
SaqAI TTAA 4 cut(s) 218, 279, 357, 913
Sau3AI GATC 2 cut(s) 704, 830
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 2 cut(s) 138, 486
SfaNI GCATC 2 cut(s) 292, 324
SfuI TTCGAA 1 cut(s) 191
Sse9I AATT 7 cut(s) 4, 28, 215, 282, 343, 362, 909
SsiI CCGC 1 cut(s) 620
SspMI CTAG 2 cut(s) 306, 456
StyD4I CCNGG 2 cut(s) 136, 484
TaaI ACNGT 2 cut(s) 51, 432
TaiI ACGT 2 cut(s) 519, 661
TaqI TCGA 2 cut(s) 191, 208
TasI AATT 7 cut(s) 4, 28, 215, 282, 343, 362, 909
TfiI GAWTC 3 cut(s) 314, 374, 737
Tru1I TTAA 4 cut(s) 218, 279, 357, 913
Tru9I TTAA 4 cut(s) 218, 279, 357, 913
TseFI GTSAC 2 cut(s) 266, 512
Tsp45I GTSAC 2 cut(s) 266, 512
TspDTI ATGAA 8 cut(s) 17, 81, 120, 228, 441, 693, 750, 834
Van91I CCANNNNNTGG 1 cut(s) 485
XapI RAATTY 2 cut(s) 4, 343
XmiI GTMKAC 1 cut(s) 883
XspI CTAG 2 cut(s) 306, 456
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.