Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000252

Physical Location & Seq

Genomic Coordinates Reverse (-)

26114146 .. 26116954

Gene Structure 2809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1214400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGGATGAAGTTTCACTCAACACTGAGCCTGCGGGCCAGGATGATGCTGATGAATTTGAGATTGAAGGAGACTGCGCAATGACCGATTTCATCAGTCAAACCGGCATTATTCAAGGAGAGAACCCTCTCCCGCCGGTTGTTGGAATGGAATTTGATTCGTATGAGGATGTATATTACTTCTATAATTGCTATGCCAAGCAACAGGGATTCGGGGTTAGAGTCAGCAATACATGGTACAGAAAAAGCAAGGAAAGATACAGAGGAAAGCTTAGCTGCAGTAGTGCAGGTTTCAAAAAGAAGAGTGAAGCTAATCGCCCGAGGCCAGAAACTAGGACCGGTTGTCCAGCAATGATAAAGTTTAGGTTAATGGACTCCAACAGGTGGAGAGTTATTGAAATTGAGCTTGAGCATAACCACTTGATCAGTCCAGCCAGTGTAAAATTTTATAAATCCCACAAGGCCATAGGCGTTGGAACCAAAAGAGCGTTGCAGATGGATACTTCTGAAGACGTACAAAAGATCAGGCTGTTTCGAACAGTGATCGTTGATTCTGAGGGTAATGGAAGCATGGATGGTGATGAAGGAGAATCTGGGAATAGAGTTGACTACTCCAGTCAGTTAAAGCTAAAAGAAGGAGATGCCCAAGCCGTTCAGAATCACTTTTCTCGGTTGCAATTAGTGGATCCAAACTTCTTTTACGTGGTGGATCTGAATGAGAAGGGATGCTTGAGAAATTTGTTTTGGGCTGACGCGAGGACTAGGGTTGCTTACGGTTATTTTAATGATGTGGTTTCCATTGACACGAAATGCGTGGAAAACAAATTTGAAGTCCCGCTGGTATCATTTATTGGAGTAAATCATCATGGGCAATCGGTGCTGTTAGGTTGCGGTTTAATTGCAAGTGAGACGGTTGAATCCTATACATGGTTGTTTAGAGCTTGGCTTACATGCATGATGGGACGCCCGCCGCAAGCCATCATTACTAGACAGTGCGGAACATTGCAAACTGCCATTTCTGATGTTTTCCCTAGAGCTTCTCATTGCCTTTGCTTATCACATATAATGCAAAAGGTTCCAGAAATTTTCGGAGGATTGTTCGAGTATGAAGCAGTTAAAGAATCTTTGAGTAGAGCTGTTTACTACTCTCTGAGGGTGGAAGAATTTGAAGCAGCTTGGGAGGATATGGTCCAGCACCACGGAATTAGAGATCATAACTGGCTTCAAGCGTTATATGAAGATCGAAAGCGGTGGGTTCCGGTATATTTGAGGGATATATTTCTGGCGGGGATGTTCCCGGTCCAACCAAGTGAGGTTGTCTCTTCATTCTTTGAGGAATTTCTGGATAGAGATACTCCTTTGAAGGAGTTTCTGGATAAGTATGATCGAGCTCTGCAAACGCATCATCACCTGGAAGCCTCGGCAGATTTGGATTCAAGAAACTCGAGCTATACGTTGGAATCGAGATGCTATTTTGAGCTGCAACTCTCAAAATTGTACACTAATGACATTCTAAGGAAGTTTGAAAAGGAGGTGGAAGGAATGTACTCTTGTTTTAGCACTAGTCAACTAAATGTTGACGGGCCAGTCATAACATACGTAGTGAAGGAACAAACTGAAAGTGGTGGAAATCGGAGGGAGACGAGGGACTATGAAGTTTTGTATAATCAATCTGAGATGGAGGTCCTTTGTATCTGTGGCATGTTCAACTTGCGAGGATACTTATGCAGACACGCACTGTCGGTCCTAAACCAAAACGGAGTGGAGGAAATTCCAGCTCAGTGCGTTCTTTCGCGATGGAGAAAGGACATCAAACGGAGTTACATTTTCGATCATAGCTGCAGCGGCATTGATATTAATAATCCAGTTCACAGGTATGACCATCTGTATAAATGCATAGTGCAAGTCGTGGAAGAAGGGAGGAAATCAGAAGACCGTTACAAGCTCGCACTAGGGGCGTTGGATGAGATATTGAAAAAGCTTTGTCTTACAGAGGATCCTGCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

669

Amino Acids

76.83

Weight (kDa)

5.48

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	60 - 141	4e-22	FAR1 DNA-binding domain
MULE	PF10551	263 - 357	6.6e-27	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80010
fragaria_vesca	FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica	MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica	Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis	pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis	RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata	RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora	Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa	Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha	Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana	Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AasI	GACNNNNNNGTC	1 cut(s)	1583
Acc16I	TGCGCA	1 cut(s)	76
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	381
AccII	CGCG	2 cut(s)	752, 1792
AclWI	GGATC	5 cut(s)	677, 690, 714, 1988, 2001
AcsI	RAATTY	9 cut(s)	53, 149, 440, 733, 821, 1080, 1160, 1334, 1767
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	961
AfaI	GTAC	4 cut(s)	236, 513, 1496, 1544
AfiI	CCNNNNNNNGG	3 cut(s)	140, 381, 924
AgeI	ACCGGT	1 cut(s)	335
AhdI	GACNNNNNGTC	1 cut(s)	339
AhlI	ACTAGT	1 cut(s)	1559
AjnI	CCWGG	2 cut(s)	36, 1407
AjuI	GAANNNNNNNTTGG	2 cut(s)	724, 756
Alw21I	GWGCWC	1 cut(s)	1390
Alw26I	GTCTC	4 cut(s)	63, 899, 1321, 1631
AlwI	GGATC	5 cut(s)	677, 690, 714, 1988, 2001
Ama87I	CYCGRG	2 cut(s)	316, 1441
AoxI	GGCC	4 cut(s)	34, 320, 459, 1580
ApeKI	GCWGC	5 cut(s)	273, 1169, 1477, 1836, 1839
ApoI	RAATTY	9 cut(s)	53, 149, 440, 733, 821, 1080, 1160, 1334, 1767
ArsI	GACNNNNNNTTYG	2 cut(s)	813, 845
AseI	ATTAAT	1 cut(s)	1854
AsiGI	ACCGGT	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	7 cut(s)	34, 333, 1186, 1297, 1580, 1681, 1741
AsuC2I	CCSGG	1 cut(s)	1295
AsuHPI	GGTGA	2 cut(s)	587, 1397
AsuII	TTCGAA	1 cut(s)	532
AvaI	CYCGRG	2 cut(s)	316, 1441
AvaII	GGWCC	5 cut(s)	333, 1186, 1297, 1681, 1741
BamHI	GGATCC	2 cut(s)	682, 1993
BanII	GRGCYC	1 cut(s)	1390
BbsI	GAAGAC	2 cut(s)	513, 1935
Bbv12I	GWGCWC	1 cut(s)	1390
BbvI	GCAGC	5 cut(s)	260, 1181, 1464, 1823, 1851
BccI	CCATC	7 cut(s)	487, 566, 949, 983, 1669, 1788, 1887
BceAI	ACGGC	1 cut(s)	632
BciT130I	CCWGG	2 cut(s)	38, 1409
BciVI	GTATCC	2 cut(s)	490, 1709
BclI	TGATCA	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	1295
BcoDI	GTCTC	4 cut(s)	63, 899, 1321, 1631
BcuI	ACTAGT	1 cut(s)	1559
BfaI	CTAG	6 cut(s)	330, 759, 984, 1029, 1560, 1949
BfmI	CTRYAG	2 cut(s)	274, 1837
BfuAI	ACCTGC	1 cut(s)	275
BfuI	GTATCC	2 cut(s)	490, 1709
BisI	GCNGC	7 cut(s)	274, 968, 1170, 1478, 1837, 1840, 1843
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	7 cut(s)	275, 969, 1171, 1479, 1838, 1841, 1844
Bme1390I	CCNGG	3 cut(s)	38, 1295, 1409
Bme18I	GGWCC	5 cut(s)	333, 1186, 1297, 1681, 1741
BmeRI	GACNNNNNGTC	1 cut(s)	339
BmeT110I	CYCGRG	2 cut(s)	316, 1441
BmgT120I	GGNCC	7 cut(s)	34, 333, 1186, 1297, 1580, 1681, 1741
BmiI	GGNNCC	5 cut(s)	475, 684, 1074, 1254, 1995
BmrFI	CCNGG	3 cut(s)	38, 1295, 1409
BmsI	GCATC	5 cut(s)	34, 628, 713, 1408, 1454
BpiI	GAAGAC	2 cut(s)	513, 1935
BplI	GAGNNNNNCTC	2 cut(s)	1301, 1333
BpmI	CTGGAG	1 cut(s)	595
Bpu1102I	GCTNAGC	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	532
BpuEI	CTTGAG	2 cut(s)	425, 748
BpuMI	CCSGG	1 cut(s)	1295
BsaAI	YACGTR	2 cut(s)	700, 1597
BsaHI	GRCGYC	1 cut(s)	961
BsaJI	CCNNGG	3 cut(s)	317, 1195, 1416
BsaWI	WCCGGW	2 cut(s)	335, 1255
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 381, 924
Bse118I	RCCGGY	3 cut(s)	101, 133, 335
Bse1I	ACTGG	5 cut(s)	432, 612, 1220, 1583, 1862
Bse3DI	GCAATG	4 cut(s)	84, 354, 998, 1039
BseBI	CCWGG	2 cut(s)	38, 1409
BseDI	CCNNGG	3 cut(s)	317, 1195, 1416
BseGI	GGATG	7 cut(s)	10, 46, 172, 577, 728, 1293, 1966
BseLI	CCNNNNNNNGG	3 cut(s)	140, 381, 924
BseMI	GCAATG	4 cut(s)	84, 354, 998, 1039
BseMII	CTCAG	5 cut(s)	15, 543, 1139, 1662, 1790
BseNI	ACTGG	5 cut(s)	432, 612, 1220, 1583, 1862
BseXI	GCAGC	5 cut(s)	260, 1181, 1464, 1823, 1851
BsgI	GTGCAG	1 cut(s)	303
Bsh1236I	CGCG	2 cut(s)	752, 1792
BshFI	GGCC	4 cut(s)	36, 322, 461, 1582
BshTI	ACCGGT	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	1390
BsiHKCI	CYCGRG	2 cut(s)	316, 1441
BsiSI	CCGG	5 cut(s)	102, 134, 336, 1256, 1295
BslFI	GGGAC	3 cut(s)	815, 972, 1658
BslI	CCNNNNNNNGG	3 cut(s)	140, 381, 924
BsmAI	GTCTC	4 cut(s)	63, 899, 1321, 1631
BsmBI	CGTCTC	2 cut(s)	899, 1631
BsmFI	GGGAC	3 cut(s)	815, 972, 1658
BsnI	GGCC	4 cut(s)	36, 322, 461, 1582
BsoBI	CYCGRG	2 cut(s)	316, 1441
Bsp119I	TTCGAA	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	1390
Bsp1407I	TGTACA	1 cut(s)	1494
Bsp1720I	GCTNAGC	1 cut(s)	269
Bsp68I	TCGCGA	1 cut(s)	1792
BspANI	GGCC	4 cut(s)	36, 322, 461, 1582
BspCNI	CTCAG	5 cut(s)	16, 544, 1140, 1663, 1789
BspFNI	CGCG	2 cut(s)	752, 1792
BspLI	GGNNCC	5 cut(s)	475, 684, 1074, 1254, 1995
BspMAI	CTGCAG	2 cut(s)	278, 1841
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	5 cut(s)	677, 690, 714, 1988, 2001
BspT104I	TTCGAA	1 cut(s)	532
BsrDI	GCAATG	4 cut(s)	84, 354, 998, 1039
BsrFI	RCCGGY	3 cut(s)	101, 133, 335
BsrGI	TGTACA	1 cut(s)	1494
BsrI	ACTGG	5 cut(s)	432, 612, 1220, 1583, 1862
BssAI	RCCGGY	3 cut(s)	101, 133, 335
BssECI	CCNNGG	3 cut(s)	317, 1195, 1416
BssNI	GRCGYC	1 cut(s)	961
Bst2UI	CCWGG	2 cut(s)	38, 1409
Bst4CI	ACNGT	6 cut(s)	538, 773, 910, 990, 1737, 1934
Bst6I	CTCTTC	2 cut(s)	293, 1324
BstACI	GRCGYC	1 cut(s)	961
BstAPI	GCANNNNNTGC	1 cut(s)	874
BstAUI	TGTACA	1 cut(s)	1494
BstBAI	YACGTR	2 cut(s)	700, 1597
BstBI	TTCGAA	1 cut(s)	532
BstC8I	GCNNGC	5 cut(s)	30, 34, 965, 972, 1944
BstDEI	CTNAG	7 cut(s)	24, 269, 552, 1148, 1511, 1671, 1776
BstDSI	CCRYGG	1 cut(s)	1195
BstF5I	GGATG	7 cut(s)	10, 46, 172, 577, 728, 1293, 1966
BstFNI	CGCG	2 cut(s)	752, 1792
BstHHI	GCGC	1 cut(s)	77
BstMAI	GTCTC	4 cut(s)	63, 899, 1321, 1631
BstMWI	GCNNNNNNNGC	3 cut(s)	874, 1842, 1952
BstNI	CCWGG	2 cut(s)	38, 1409
BstNSI	RCATGY	2 cut(s)	951, 1702
BstSCI	CCNGG	3 cut(s)	36, 1293, 1407
BstSFI	CTRYAG	2 cut(s)	274, 1837
BstSNI	TACGTA	1 cut(s)	1597
BstUI	CGCG	2 cut(s)	752, 1792
BstV1I	GCAGC	5 cut(s)	260, 1181, 1464, 1823, 1851
BstV2I	GAAGAC	2 cut(s)	513, 1935
BstX2I	RGATCY	3 cut(s)	682, 706, 1993
BstYI	RGATCY	3 cut(s)	682, 706, 1993
BsuI	GTATCC	2 cut(s)	490, 1709
BsuRI	GGCC	4 cut(s)	36, 322, 461, 1582
BtgI	CCRYGG	1 cut(s)	1195
BtgZI	GCGATG	1 cut(s)	1807
BtsCI	GGATG	7 cut(s)	10, 46, 172, 577, 728, 1293, 1966
BtsIMutI	CAGTG	6 cut(s)	21, 439, 543, 995, 1733, 1784
BtuMI	TCGCGA	1 cut(s)	1792
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	5 cut(s)	30, 34, 965, 972, 1944
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	3 cut(s)	101, 133, 335
Cfr13I	GGNCC	7 cut(s)	34, 333, 1186, 1297, 1580, 1681, 1741
CseI	GACGC	2 cut(s)	758, 969
Csp6I	GTAC	4 cut(s)	235, 512, 1495, 1543
CspAI	ACCGGT	1 cut(s)	335
CviAII	CATG	7 cut(s)	231, 568, 863, 924, 948, 952, 1699
CviQI	GTAC	4 cut(s)	235, 512, 1495, 1543
DdeI	CTNAG	7 cut(s)	24, 269, 552, 1148, 1511, 1671, 1776
DrdI	GACNNNNNNGTC	1 cut(s)	1583
DriI	GACNNNNNGTC	1 cut(s)	339
DseDI	GACNNNNNNGTC	1 cut(s)	1583
Eam1104I	CTCTTC	2 cut(s)	293, 1324
Eam1105I	GACNNNNNGTC	1 cut(s)	339
EarI	CTCTTC	2 cut(s)	293, 1324
Ecl136II	GAGCTC	1 cut(s)	1388
Eco105I	TACGTA	1 cut(s)	1597
Eco24I	GRGCYC	1 cut(s)	1390
Eco47I	GGWCC	5 cut(s)	333, 1186, 1297, 1681, 1741
Eco53kI	GAGCTC	1 cut(s)	1388
Eco57I	CTGAAG	1 cut(s)	525
Eco88I	CYCGRG	2 cut(s)	316, 1441
EcoICRI	GAGCTC	1 cut(s)	1388
EcoO109I	RGGNCCY	1 cut(s)	1681
EcoRII	CCWGG	2 cut(s)	36, 1407
EcoT22I	ATGCAT	2 cut(s)	953, 1895
EcoT38I	GRGCYC	1 cut(s)	1390
Esp3I	CGTCTC	2 cut(s)	899, 1631
FaeI	CATG	7 cut(s)	234, 571, 866, 927, 951, 955, 1702
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FaqI	GGGAC	3 cut(s)	815, 972, 1658
FatI	CATG	7 cut(s)	230, 567, 862, 923, 947, 951, 1698
FauI	CCCGC	5 cut(s)	25, 138, 840, 972, 1276
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	7 cut(s)	274, 968, 1170, 1478, 1837, 1840, 1843
FokI	GGATG	7 cut(s)	17, 53, 179, 584, 735, 1300, 1973
FriOI	GRGCYC	1 cut(s)	1390
Fsp4HI	GCNGC	7 cut(s)	274, 968, 1170, 1478, 1837, 1840, 1843
FspBI	CTAG	6 cut(s)	330, 759, 984, 1029, 1560, 1949
FspI	TGCGCA	1 cut(s)	76
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	7 cut(s)	274, 968, 1170, 1478, 1837, 1840, 1843
GsuI	CTGGAG	1 cut(s)	595
HaeIII	GGCC	4 cut(s)	36, 322, 461, 1582
HapII	CCGG	5 cut(s)	102, 134, 336, 1256, 1295
HgaI	GACGC	2 cut(s)	758, 969
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	961
Hin1II	CATG	7 cut(s)	234, 571, 866, 927, 951, 955, 1702
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	3 cut(s)	604, 1565, 1576
HindII	GTYRAC	3 cut(s)	604, 1565, 1576
HindIII	AAGCTT	2 cut(s)	266, 1976
HpaII	CCGG	5 cut(s)	102, 134, 336, 1256, 1295
HphI	GGTGA	2 cut(s)	587, 1397
Hpy166II	GTNNAC	6 cut(s)	604, 1138, 1497, 1565, 1576, 1867
Hpy188III	TCNNGA	6 cut(s)	1076, 1340, 1370, 1434, 1461, 1791
Hpy8I	GTNNAC	6 cut(s)	604, 1138, 1497, 1565, 1576, 1867
HpyAV	CCTTC	8 cut(s)	59, 575, 626, 712, 1354, 1529, 1597, 1907
HpyCH4III	ACNGT	6 cut(s)	538, 773, 910, 990, 1737, 1934
HpyCH4IV	ACGT	4 cut(s)	510, 699, 1451, 1596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	874, 1842, 1952
HpyF3I	CTNAG	7 cut(s)	24, 269, 552, 1148, 1511, 1671, 1776
HpySE526I	ACGT	4 cut(s)	510, 699, 1451, 1596
Hsp92I	GRCGYC	1 cut(s)	961
Hsp92II	CATG	7 cut(s)	234, 571, 866, 927, 951, 955, 1702
HspAI	GCGC	1 cut(s)	75
Ksp22I	TGATCA	1 cut(s)	420
Lsp1109I	GCAGC	5 cut(s)	260, 1181, 1464, 1823, 1851
LweI	GCATC	5 cut(s)	34, 628, 713, 1408, 1454
MaeI	CTAG	6 cut(s)	330, 759, 984, 1029, 1560, 1949
MaeII	ACGT	4 cut(s)	510, 699, 1451, 1596
MaeIII	GTNAC	2 cut(s)	1817, 1934
MboII	GAAGA	7 cut(s)	310, 518, 1169, 1247, 1311, 1922, 1940
MflI	RGATCY	3 cut(s)	682, 706, 1993
MhlI	GDGCHC	1 cut(s)	1390
MlyI	GAGTC	2 cut(s)	228, 365
MmeI	TCCRAC	6 cut(s)	121, 399, 451, 1324, 1434, 1938
Mph1103I	ATGCAT	2 cut(s)	953, 1895
MseI	TTAA	6 cut(s)	365, 620, 780, 893, 1113, 1854
MslI	CAYNNNNRTG	1 cut(s)	1872
MspA1I	CMGCKG	2 cut(s)	835, 1842
MspI	CCGG	5 cut(s)	102, 134, 336, 1256, 1295
MspR9I	CCNGG	3 cut(s)	38, 1295, 1409
MvaI	CCWGG	2 cut(s)	38, 1409
MvnI	CGCG	2 cut(s)	752, 1792
MwoI	GCNNNNNNNGC	3 cut(s)	874, 1842, 1952
NciI	CCSGG	1 cut(s)	1295
NlaIII	CATG	7 cut(s)	234, 571, 866, 927, 951, 955, 1702
NlaIV	GGNNCC	5 cut(s)	475, 684, 1074, 1254, 1995
NmeAIII	GCCGAG	1 cut(s)	1397
NruI	TCGCGA	1 cut(s)	1792
NsbI	TGCGCA	1 cut(s)	76
NsiI	ATGCAT	2 cut(s)	953, 1895
NspI	RCATGY	2 cut(s)	951, 1702
NspV	TTCGAA	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	1441
PcsI	WCGNNNNNNNCGW	2 cut(s)	1448, 1457
PfeI	GAWTC	9 cut(s)	155, 207, 548, 587, 655, 914, 1118, 1430, 1457
PflMI	CCANNNNNTGG	1 cut(s)	381
PinAI	ACCGGT	1 cut(s)	335
PkrI	GCNGC	7 cut(s)	275, 969, 1171, 1479, 1838, 1841, 1844
PleI	GAGTC	2 cut(s)	227, 365
PpsI	GAGTC	2 cut(s)	227, 365
Ppu21I	YACGTR	2 cut(s)	700, 1597
PpuMI	RGGWCCY	1 cut(s)	1681
PshBI	ATTAAT	1 cut(s)	1854
PsiI	TTATAA	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	1390
Psp5II	RGGWCCY	1 cut(s)	1681
Psp6I	CCWGG	2 cut(s)	36, 1407
PspGI	CCWGG	2 cut(s)	36, 1407
PspN4I	GGNNCC	5 cut(s)	475, 684, 1074, 1254, 1995
PspPI	GGNCC	7 cut(s)	34, 333, 1186, 1297, 1580, 1681, 1741
PspPPI	RGGWCCY	1 cut(s)	1681
PspXI	VCTCGAGB	1 cut(s)	1441
PstI	CTGCAG	2 cut(s)	278, 1841
PsuI	RGATCY	3 cut(s)	682, 706, 1993
RruI	TCGCGA	1 cut(s)	1792
RsaI	GTAC	4 cut(s)	236, 513, 1496, 1544
RsaNI	GTAC	4 cut(s)	235, 512, 1495, 1543
RseI	CAYNNNNRTG	1 cut(s)	1872
SacI	GAGCTC	1 cut(s)	1390
SaqAI	TTAA	6 cut(s)	365, 620, 780, 893, 1113, 1854
SatI	GCNGC	7 cut(s)	274, 968, 1170, 1478, 1837, 1840, 1843
Sau96I	GGNCC	7 cut(s)	34, 333, 1186, 1297, 1580, 1681, 1741
SchI	GAGTC	2 cut(s)	228, 365
ScrFI	CCNGG	3 cut(s)	38, 1295, 1409
SduI	GDGCHC	1 cut(s)	1390
SfaNI	GCATC	5 cut(s)	34, 628, 713, 1408, 1454
SfcI	CTRYAG	2 cut(s)	274, 1837
Sfr274I	CTCGAG	1 cut(s)	1441
SfuI	TTCGAA	1 cut(s)	532
SinI	GGWCC	5 cut(s)	333, 1186, 1297, 1681, 1741
SlaI	CTCGAG	1 cut(s)	1441
SmiMI	CAYNNNNRTG	1 cut(s)	1872
SmlI	CTYRAG	3 cut(s)	404, 727, 1441
SmoI	CTYRAG	3 cut(s)	404, 727, 1441
SnaBI	TACGTA	1 cut(s)	1597
SpeI	ACTAGT	1 cut(s)	1559
SspMI	CTAG	6 cut(s)	330, 759, 984, 1029, 1560, 1949
SstI	GAGCTC	1 cut(s)	1390
StyD4I	CCNGG	3 cut(s)	36, 1293, 1407
TaaI	ACNGT	6 cut(s)	538, 773, 910, 990, 1737, 1934
TaiI	ACGT	4 cut(s)	513, 702, 1454, 1599
TaqI	TCGA	7 cut(s)	532, 1098, 1240, 1384, 1442, 1460, 1827
TaqII	GACCGA	2 cut(s)	98, 1729
TatI	WGTACW	2 cut(s)	1494, 1542
TauI	GCSGC	2 cut(s)	970, 1845
TfiI	GAWTC	9 cut(s)	155, 207, 548, 587, 655, 914, 1118, 1430, 1457
Tru1I	TTAA	6 cut(s)	365, 620, 780, 893, 1113, 1854
Tru9I	TTAA	6 cut(s)	365, 620, 780, 893, 1113, 1854
TscAI	CASTG	6 cut(s)	28, 439, 543, 995, 1740, 1784
TseI	GCWGC	5 cut(s)	273, 1169, 1477, 1836, 1839
TspDTI	ATGAA	8 cut(s)	21, 66, 79, 594, 1119, 1248, 1311, 1665
TspGWI	ACGGA	3 cut(s)	1212, 1770, 1828
TspRI	CASTG	6 cut(s)	28, 439, 543, 995, 1740, 1784
Van91I	CCANNNNNTGG	1 cut(s)	381
VpaK11BI	GGWCC	5 cut(s)	333, 1186, 1297, 1681, 1741
VspI	ATTAAT	1 cut(s)	1854
XapI	RAATTY	9 cut(s)	53, 149, 440, 733, 821, 1080, 1160, 1334, 1767
XceI	RCATGY	2 cut(s)	951, 1702
XhoI	CTCGAG	1 cut(s)	1441
XspI	CTAG	6 cut(s)	330, 759, 984, 1029, 1560, 1949
Zsp2I	ATGCAT	2 cut(s)	953, 1895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.