Rw1G039690

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000252
Physical Location & Seq
Reverse (-)
67211037 .. 67213007
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039690.1

Sequence Viewer

Length: 1578 bp
ATGCAAGCTAAGAATGCTAGTTTCTTCTATGTCATTGATATAAATGAAAATGGTAGATTGAGAAATTTATTTTGGGCAGATGCAAGGAGTAGGGTGGCGTACCAGGAATTTGGCGATGTTGTTACATTTGACACTGCTTATTTGACGAATAAGTATGAAATGCCCTTTGCTCCATTTGTAGGGGTCAACCATCATGGGCAGTCTATATTGCTTGGATGTGGATTGATTTCAAGTGAAGATACTGAGACATTTGTTTGGTTTTTCAAGTCTTGGCTAGCATGTATGTCTGGGAATGCTCCTAATGGAATAATTACTGACCAAGATAGAGCCATGAAAAATGTCATTGAGATTGTCTTTCCAAACACTAGGCATCGATATACAGAATATGAATCTCTCTCAGTGACCTTGCTAAATACTGTTTATGATTCATTATCTCGAGTTGAGTTTGAAGAACGCTGGGATGAGGTGATTAAGAAATACAAGTTGCATGAAAATGATTGGTTGAATGTCATCTTCGTTAAAGATTGTTTTTGGGCAGGAATGTCTACCACACAACGAAGTGAAAGTATGAATTCATTTTTTGATGGCCATGTCAATTCCAAGACTACCTTGAAACAGTTTGTGGAGCAATATGAAAATGCATTGAGAAGTAAGGTGGAGAAAGAGAACCATGAAGATTTCAAGTGTTTCTCATATAGTCTTCCTGGTGCAACTCATTATGACATGGAAAAACAAGCACATGATATCTACACAACTTCGAAGTTCAAAGAGTTTCGAGATGAATTAACAAGTATACTATGCAGGCATGCAATATATGTTCTGATTCGTCATAAGAAAAACATGATTCCAAATAAATATATCCTGAGAAGATGGAGGAAGGATGTGAAGAGGTGTCACACAAGGGTTAAAATTAGTTATGGTGGATGGGATGCTAGACCTGAATCACAAAGGCTTGACAAGATGCAAAAGAATTTTGATGACATTAAAGAATTAGCATACGATTCTGAAGATAAGTGCATGATTGTTATGACTTGGTTGCATACCCTAAAGGATGAACTGTCCAAACATGAGTCCAAGAATGCTAGTGCTTGTGGTGGTACTGAACCAATGTCTGGCTCACCTATCAATAGATATGGGAGTAACATTGATGGTATTTCAAATATTTCAAGTCAACATATACTTACTCCATTGGTGAATAAGAGAAAAGGACGCCCACCATCCAAAAGGAAGGTTTCTAAGGTAGAAGAAGCGGTAAAAAAGAAACAGAAAAGAGAACAAAAGAACAAACATGGTGGGAACAATACTAATGAAGAAGTAGGAGTGAAGGGGTCAAGATCAAGAGGTCGTATGCCATTGAAGAGGAATGAATCTAAGAAAGAACAAGAGCAAGAGGTCAAAAACAAACAAAATAGAAGAAATAAGGTTCCATCCAATAAAAACCCTAATCATGAAGGAGAAGGATTAAAGAATTCTGATACATTGTGTGTTTTCATTTTTAAAGATTTTTCACCCTCACAAAGTGATGTCAATCCAAAGAGAGTTCGTATACCATCGAAAAGATTATTGGAAATAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

525

Amino Acids

61.08

Weight (kDa)

9.32

Isoelectric Point (pI)

58.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 11 - 123 3.3e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 40 - 126 9.6e-29 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1112
AccI GTMKAC 3 cut(s) 545, 793, 1546
AciI CCGC 1 cut(s) 1250
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 5 cut(s) 64, 107, 571, 970, 1468
AcuI CTGAAG 1 cut(s) 1026
AcyI GRCGYC 1 cut(s) 1210
AdeI CACNNNGTG 1 cut(s) 1520
AfaI GTAC 2 cut(s) 101, 1099
AfiI CCNNNNNNNGG 2 cut(s) 179, 1112
AjnI CCWGG 2 cut(s) 102, 703
AjuI GAANNNNNNNTTGG 3 cut(s) 55, 87, 1547
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 1 cut(s) 586
ApoI RAATTY 5 cut(s) 64, 107, 571, 970, 1468
AsuHPI GGTGA 4 cut(s) 478, 1110, 1204, 1500
AsuII TTCGAA 1 cut(s) 758
AsuNHI GCTAGC 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 435
BalI TGGCCA 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 692
BccI CCATC 8 cut(s) 198, 578, 864, 918, 1142, 1225, 1435, 1558
BciT130I CCWGG 2 cut(s) 104, 705
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 5 cut(s) 18, 275, 366, 933, 1083
Bme1390I CCNGG 2 cut(s) 104, 705
BmeT110I CYCGRG 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 1425
BmrFI CCNGG 2 cut(s) 104, 705
BmsI GCATC 4 cut(s) 70, 379, 919, 951
BmtI GCTAGC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 692
Bpu14I TTCGAA 1 cut(s) 758
Bsa29I ATCGAT 1 cut(s) 373
BsaBI GATNNNNATC 1 cut(s) 1527
BsaHI GRCGYC 1 cut(s) 1210
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 1112
Bse8I GATNNNNATC 1 cut(s) 1527
BseBI CCWGG 2 cut(s) 104, 705
BseCI ATCGAT 1 cut(s) 373
BseGI GGATG 8 cut(s) 221, 466, 886, 929, 934, 1057, 1217, 1427
BseJI GATNNNNATC 1 cut(s) 1527
BseLI CCNNNNNNNGG 2 cut(s) 179, 1112
BseMII CTCAG 3 cut(s) 234, 411, 854
BseYI CCCAGC 1 cut(s) 456
BshFI GGCC 1 cut(s) 588
BshVI ATCGAT 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 179, 1112
BsmAI GTCTC 1 cut(s) 239
BsmI GAATGC 3 cut(s) 19, 298, 1084
BsnI GGCC 1 cut(s) 588
BsoBI CYCGRG 1 cut(s) 435
Bsp119I TTCGAA 1 cut(s) 758
Bsp143I GATC 1 cut(s) 1334
BspACI CCGC 1 cut(s) 1250
BspANI GGCC 1 cut(s) 588
BspCNI CTCAG 3 cut(s) 235, 410, 855
BspDI ATCGAT 1 cut(s) 373
BspHI TCATGA 1 cut(s) 1447
BspLI GGNNCC 1 cut(s) 1425
BspOI GCTAGC 1 cut(s) 278
BspT104I TTCGAA 1 cut(s) 758
BssMI GATC 1 cut(s) 1334
BssNAI GTATAC 2 cut(s) 794, 1547
BssNI GRCGYC 1 cut(s) 1210
Bst1107I GTATAC 2 cut(s) 794, 1547
Bst2UI CCWGG 2 cut(s) 104, 705
Bst4CI ACNGT 3 cut(s) 418, 618, 1059
Bst6I CTCTTC 2 cut(s) 881, 1352
BstACI GRCGYC 1 cut(s) 1210
BstBI TTCGAA 1 cut(s) 758
BstC8I GCNNGC 4 cut(s) 6, 276, 803, 807
BstDEI CTNAG 6 cut(s) 9, 243, 397, 863, 1236, 1371
BstF5I GGATG 8 cut(s) 221, 466, 886, 929, 934, 1057, 1217, 1427
BstKTI GATC 1 cut(s) 1337
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 1 cut(s) 1334
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 2 cut(s) 104, 705
BstNSI RCATGY 2 cut(s) 282, 809
BstSCI CCNGG 2 cut(s) 102, 703
BstV2I GAAGAC 1 cut(s) 692
BstXI CCANNNNNNTGG 1 cut(s) 110
BstZ17I GTATAC 2 cut(s) 794, 1547
Bsu15I ATCGAT 1 cut(s) 373
BsuRI GGCC 1 cut(s) 588
BsuTUI ATCGAT 1 cut(s) 373
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 8 cut(s) 221, 466, 886, 929, 934, 1057, 1217, 1427
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 132, 405
Cac8I GCNNGC 4 cut(s) 6, 276, 803, 807
CciI TCATGA 1 cut(s) 1447
ClaI ATCGAT 1 cut(s) 373
CseI GACGC 1 cut(s) 1218
Csp6I GTAC 2 cut(s) 100, 1098
CspCI CAANNNNNGTGG 2 cut(s) 1273, 1308
CviJI RGCY 6 cut(s) 8, 274, 329, 588, 952, 1116
CviKI_1 RGCY 6 cut(s) 8, 274, 329, 588, 952, 1116
CviQI GTAC 2 cut(s) 100, 1098
DdeI CTNAG 6 cut(s) 9, 243, 397, 863, 1236, 1371
DpnI GATC 1 cut(s) 1336
DpnII GATC 1 cut(s) 1334
DraI TTTAAA 1 cut(s) 1498
DraIII CACNNNGTG 1 cut(s) 1520
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 881, 1352
EarI CTCTTC 2 cut(s) 881, 1352
Eco32I GATATC 1 cut(s) 745
Eco57I CTGAAG 1 cut(s) 1026
Eco88I CYCGRG 1 cut(s) 435
EcoRI GAATTC 2 cut(s) 571, 1468
EcoRII CCWGG 2 cut(s) 102, 703
EcoRV GATATC 1 cut(s) 745
EcoT22I ATGCAT 1 cut(s) 643
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FblI GTMKAC 3 cut(s) 545, 793, 1546
FokI GGATG 8 cut(s) 228, 473, 893, 936, 941, 1064, 1204, 1414
FspBI CTAG 5 cut(s) 18, 275, 366, 933, 1083
GsaI CCCAGC 1 cut(s) 460
HaeIII GGCC 1 cut(s) 588
HgaI GACGC 1 cut(s) 1218
Hin1I GRCGYC 1 cut(s) 1210
HincII GTYRAC 2 cut(s) 187, 1172
HindII GTYRAC 2 cut(s) 187, 1172
HinfI GANTC 8 cut(s) 389, 425, 823, 844, 941, 1001, 1070, 1367
HphI GGTGA 4 cut(s) 478, 1110, 1204, 1500
Hpy166II GTNNAC 5 cut(s) 187, 546, 794, 1172, 1547
Hpy188I TCNGA 3 cut(s) 822, 1006, 1474
Hpy188III TCNNGA 6 cut(s) 435, 776, 862, 1332, 1338, 1448
Hpy8I GTNNAC 5 cut(s) 187, 546, 794, 1172, 1547
HpyAV CCTTC 5 cut(s) 871, 1222, 1318, 1445, 1451
HpyCH4III ACNGT 3 cut(s) 418, 618, 1059
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 6 cut(s) 9, 243, 397, 863, 1236, 1371
Hsp92I GRCGYC 1 cut(s) 1210
Kzo9I GATC 1 cut(s) 1334
LmnI GCTCC 3 cut(s) 175, 301, 625
LweI GCATC 4 cut(s) 70, 379, 919, 951
MaeI CTAG 5 cut(s) 18, 275, 366, 933, 1083
MaeIII GTNAC 4 cut(s) 121, 400, 893, 1139
MalI GATC 1 cut(s) 1336
MboI GATC 1 cut(s) 1334
MlsI TGGCCA 1 cut(s) 588
MluNI TGGCCA 1 cut(s) 588
MlyI GAGTC 1 cut(s) 1079
MnlI CCTC 7 cut(s) 457, 867, 882, 1334, 1353, 1384, 1522
Mox20I TGGCCA 1 cut(s) 588
Mph1103I ATGCAT 1 cut(s) 643
MscI TGGCCA 1 cut(s) 588
MseI TTAA 8 cut(s) 471, 519, 785, 906, 984, 1463, 1497, 1576
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 588
MspR9I CCNGG 2 cut(s) 104, 705
Mva1269I GAATGC 3 cut(s) 19, 298, 1084
MvaI CCWGG 2 cut(s) 104, 705
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 1 cut(s) 1334
NheI GCTAGC 1 cut(s) 274
NlaIV GGNNCC 1 cut(s) 1425
NmuCI GTSAC 2 cut(s) 400, 893
NsiI ATGCAT 1 cut(s) 643
NspI RCATGY 2 cut(s) 282, 809
NspV TTCGAA 1 cut(s) 758
PaeI GCATGC 1 cut(s) 809
PaeR7I CTCGAG 1 cut(s) 435
PagI TCATGA 1 cut(s) 1447
PctI GAATGC 3 cut(s) 19, 298, 1084
PfeI GAWTC 7 cut(s) 389, 425, 823, 844, 941, 1001, 1367
PflMI CCANNNNNTGG 1 cut(s) 1112
PleI GAGTC 1 cut(s) 1078
PpsI GAGTC 1 cut(s) 1078
Psp6I CCWGG 2 cut(s) 102, 703
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 2 cut(s) 102, 703
PspN4I GGNNCC 1 cut(s) 1425
RsaI GTAC 2 cut(s) 101, 1099
RsaNI GTAC 2 cut(s) 100, 1098
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 8 cut(s) 471, 519, 785, 906, 984, 1463, 1497, 1576
Sau3AI GATC 1 cut(s) 1334
SchI GAGTC 1 cut(s) 1079
ScrFI CCNGG 2 cut(s) 104, 705
SfaNI GCATC 4 cut(s) 70, 379, 919, 951
Sfr274I CTCGAG 1 cut(s) 435
SfuI TTCGAA 1 cut(s) 758
SlaI CTCGAG 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
SphI GCATGC 1 cut(s) 809
SsiI CCGC 1 cut(s) 1250
SspI AATATT 1 cut(s) 1162
SspMI CTAG 5 cut(s) 18, 275, 366, 933, 1083
StyD4I CCNGG 2 cut(s) 102, 703
TaaI ACNGT 3 cut(s) 418, 618, 1059
TaqI TCGA 5 cut(s) 373, 436, 758, 775, 1553
TfiI GAWTC 7 cut(s) 389, 425, 823, 844, 941, 1001, 1367
Tru1I TTAA 8 cut(s) 471, 519, 785, 906, 984, 1463, 1497, 1576
Tru9I TTAA 8 cut(s) 471, 519, 785, 906, 984, 1463, 1497, 1576
TscAI CASTG 2 cut(s) 139, 405
TseFI GTSAC 2 cut(s) 400, 893
Tsp45I GTSAC 2 cut(s) 400, 893
TspRI CASTG 2 cut(s) 139, 405
Van91I CCANNNNNTGG 1 cut(s) 1112
XapI RAATTY 5 cut(s) 64, 107, 571, 970, 1468
XceI RCATGY 2 cut(s) 282, 809
XhoI CTCGAG 1 cut(s) 435
XmiI GTMKAC 3 cut(s) 545, 793, 1546
XspI CTAG 5 cut(s) 18, 275, 366, 933, 1083
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.