FvH4_2g24400

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000252
Physical Location & Seq
Reverse (-)
19930613 .. 19931385
773 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24400.t1

Sequence Viewer

Length: 585 bp
ATGCAGAAGAGGTTTGATGACATTAAGGAGTTAGCCTATGATTCTGAAGATAAATGCATGATCGTTATGACTTGGTTGCATAACCTAAATGATGAACTATCAAAACATGAGTCCAAGAACTCTTGTACTTCTGTTGGTGCTGACCCGGTGGCTGGATCACCTATCAATAGAAATGAGAGTGACATTGATGGTACTTCTAATCCAGGTCAACATATACTTACTCCATTGGTGAAAAAAAGAAAAGGCCGCCCACCATCTAAAAGGAAGATGTCTACGGTAGAAGAGGAGGTAAGAAATAAGCAAACACGAGAACAGAAGAAAAAATGTGGAGCAAACAATGCTAATGAAGAATTAGGAGCTAAGGGTTCAAAATCAAGAGGCCGCCCGCCATTACAAAGGAACGAATCTAATAAAAAGAAAGAGGAAGAGGTCAAAAACAAACAAAATAGAAGAAATAAGGCTTCATCAAATAAGAAGCCTGATCAAGAAGAAGAAAGATTACAGGATTTTTCACCCTCACAAACTGATGCCAATACAAAAAGAGTTCGTATACCATCTAAAAGATTGTTGGAAACATTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

195

Amino Acids

22.17

Weight (kDa)

9.7

Isoelectric Point (pI)

78.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 272, 550
AciI CCGC 3 cut(s) 247, 382, 386
AclWI GGATC 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 2 cut(s) 127, 193
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 369
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
AlwI GGATC 1 cut(s) 163
AoxI GGCC 2 cut(s) 244, 379
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 150, 241, 504
BarI GAAGNNNNNNTAC 2 cut(s) 483, 515
BauI CACGAG 1 cut(s) 306
BccI CCATC 3 cut(s) 182, 262, 562
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 1 cut(s) 146
BisI GCNGC 2 cut(s) 247, 382
BlsI GCNGC 2 cut(s) 248, 383
Bme1390I CCNGG 2 cut(s) 146, 204
BmrFI CCNGG 2 cut(s) 146, 204
BmsI GCATC 1 cut(s) 517
Bpu10I CCTNAGC 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 299
BshFI GGCC 2 cut(s) 246, 381
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 152
BsnI GGCC 2 cut(s) 246, 381
Bsp143I GATC 3 cut(s) 60, 155, 481
BspACI CCGC 3 cut(s) 247, 382, 386
BspANI GGCC 2 cut(s) 246, 381
BspPI GGATC 1 cut(s) 163
BssMI GATC 3 cut(s) 60, 155, 481
BssNAI GTATAC 1 cut(s) 551
BssSI CACGAG 1 cut(s) 306
Bst1107I GTATAC 1 cut(s) 551
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 3 cut(s) 2, 276, 420
BstAPI GCANNNNNTGC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 386
BstDEI CTNAG 1 cut(s) 360
BstKTI GATC 3 cut(s) 63, 158, 484
BstMBI GATC 3 cut(s) 60, 155, 481
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 2 cut(s) 144, 202
BstZ17I GTATAC 1 cut(s) 551
BsuRI GGCC 2 cut(s) 246, 381
Cac8I GCNNGC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 126, 192
CviAII CATG 2 cut(s) 58, 107
CviJI RGCY 7 cut(s) 35, 152, 246, 359, 381, 461, 478
CviKI_1 RGCY 7 cut(s) 35, 152, 246, 359, 381, 461, 478
CviQI GTAC 2 cut(s) 126, 192
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 62, 157, 483
DpnII GATC 3 cut(s) 60, 155, 481
DraI TTTAAA 1 cut(s) 580
Eam1104I CTCTTC 3 cut(s) 2, 276, 420
EarI CTCTTC 3 cut(s) 2, 276, 420
Eco57I CTGAAG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 59
FaeI CATG 2 cut(s) 61, 110
FaiI YATR 8 cut(s) 39, 59, 68, 81, 108, 213, 215, 551
FatI CATG 2 cut(s) 57, 106
FauI CCCGC 1 cut(s) 393
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 2 cut(s) 272, 550
Fnu4HI GCNGC 2 cut(s) 247, 382
Fsp4HI GCNGC 2 cut(s) 247, 382
GluI GCNGC 2 cut(s) 247, 382
HaeIII GGCC 2 cut(s) 246, 381
HapII CCGG 1 cut(s) 146
Hin1II CATG 2 cut(s) 61, 110
HincII GTYRAC 1 cut(s) 209
HindII GTYRAC 1 cut(s) 209
HinfI GANTC 3 cut(s) 41, 110, 404
HpaII CCGG 1 cut(s) 146
HphI GGTGA 3 cut(s) 150, 241, 504
Hpy166II GTNNAC 3 cut(s) 209, 273, 551
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 2 cut(s) 375, 485
Hpy8I GTNNAC 3 cut(s) 209, 273, 551
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 4, 57, 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 2 cut(s) 61, 110
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 3 cut(s) 60, 155, 481
LmnI GCTCC 2 cut(s) 329, 356
LpnPI CCDG 6 cut(s) 138, 159, 189, 216, 488, 492
LweI GCATC 1 cut(s) 517
MaeIII GTNAC 1 cut(s) 179
MalI GATC 3 cut(s) 62, 157, 483
MboI GATC 3 cut(s) 60, 155, 481
MluCI AATT 1 cut(s) 350
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 7 cut(s) 3, 277, 280, 371, 415, 421, 526
Mph1103I ATGCAT 1 cut(s) 59
MseI TTAA 2 cut(s) 24, 579
MslI CAYNNNNRTG 1 cut(s) 580
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 146, 204
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 338
NciI CCSGG 1 cut(s) 146
NdeII GATC 3 cut(s) 60, 155, 481
NlaIII CATG 2 cut(s) 61, 110
NmuCI GTSAC 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 59
PfeI GAWTC 2 cut(s) 41, 404
PkrI GCNGC 2 cut(s) 248, 383
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
RsaI GTAC 2 cut(s) 127, 193
RsaNI GTAC 2 cut(s) 126, 192
RseI CAYNNNNRTG 1 cut(s) 580
SaqAI TTAA 2 cut(s) 24, 579
SatI GCNGC 2 cut(s) 247, 382
Sau3AI GATC 3 cut(s) 60, 155, 481
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 146, 204
SetI ASST 7 cut(s) 14, 87, 163, 208, 291, 361, 432
SfaNI GCATC 1 cut(s) 517
SmiI ATTTAAAT 1 cut(s) 580
SmiMI CAYNNNNRTG 1 cut(s) 580
Sse9I AATT 1 cut(s) 350
SsiI CCGC 3 cut(s) 247, 382, 386
StyD4I CCNGG 2 cut(s) 144, 202
SwaI ATTTAAAT 1 cut(s) 580
TaaI ACNGT 1 cut(s) 277
TasI AATT 1 cut(s) 350
TatI WGTACW 1 cut(s) 125
TauI GCSGC 2 cut(s) 249, 384
TfiI GAWTC 2 cut(s) 41, 404
Tru1I TTAA 2 cut(s) 24, 579
Tru9I TTAA 2 cut(s) 24, 579
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 3 cut(s) 108, 360, 453
XmiI GTMKAC 2 cut(s) 272, 550
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.