Rh2CG315500

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000252
Physical Location & Seq
Forward (+)
40016071 .. 40042920
26850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG315500.1

Sequence Viewer

Length: 1125 bp
ATGGAACAATCGTCCAGTGATTCGGAGGACATTATTCTCACTAATGATCAAGGAACAGTGGATGATTCATCAAAGAGCTTAGAGAATGATCAAGAAAATGAGGTGGAAGAAATATTGCAAGTGCCCAGTGTTGAGATGAGTTTTGATTCTATTGATGAGGCATATGACTATTATAGAAAATATGGGAAGCAATTAGGATTCCCATTTGTGGAGCAATATGAAAATGCATTGAGAAGTAAGGTGGAGAAAGAGAACCATGAAGATTTCAAGTGTTTCTCATATAGTCTCCCTGGTGCAACTCATTATGACATGGAAAAACAAGCACATGATATCTACACAACTTCGAAGTTCAAAGAGTTTCGAGATGAATTAACAGATAAATATATCCTGAGAAGATGGAGGAAGGATGTGAAGAGGTGTCACACAAGGGTACAATCACAAAGGCTTGACAAGATGCAGAAGAATTTTGATGACATTAAAGAATTAGCATACGATTCTGAAGATAAGTGCATGATTGTTATGACTTGGTTGCATACCCTAAAGGATGAACTGTCCAAACATGAGTCCAAGAATGCTAGTGCTTGTGGTGGTACTGAACCAATGCCTGGCTCACCTATCAATAGATATGGGAGTAACGTTGATGGTATTTCAAATATTCCAAGTCAACATATACTTACTCCATTGGTGAATAAGAGAAAAGGACGCCCACCATCTAAAAGGAAGATTTCTAAGGTAGATGAAGCGGTAAGAAAGAAACAGAAAAGAGAACAAAAGACCAAACGTGGTGGGAACAATACTAATGAAGAAGTAGGAGTGAAGGGGTCAAGATCAAGAGGTCGTCTGTCATTGAAGAGGAATGAATCTAAGAAAGAGCAAGAGCAAGAGGTCAAAAACAAACAAAATAGAAGAAATAAGGTTCCATCCAATAAAAAGCCTAATCATGAAGGAGAAGGATTAAAGCTAGTGCTGCTTGCTTGGATGGACCGACGACGGTGGACACTGATGGTGTGGCTACTGGGCGGGATTGTCGGCGTCTACAGCTTTGATGTTGCCAGTGGTGACGGGGAAGTTGCTTGGTGGTGCCGCTTTGGAGCTGCTCGTCACTCCGATTCTGTTCAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

374

Amino Acids

43.25

Weight (kDa)

8.81

Isoelectric Point (pI)

63.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1080
AccB7I CCANNNNNTGG 1 cut(s) 605
AccI GTMKAC 1 cut(s) 1035
AciI CCGC 3 cut(s) 743, 1020, 1084
AclI AACGTT 1 cut(s) 636
AcsI RAATTY 1 cut(s) 463
AcuI CTGAAG 1 cut(s) 519
AcyI GRCGYC 2 cut(s) 703, 1032
AfaI GTAC 2 cut(s) 432, 592
AfiI CCNNNNNNNGG 2 cut(s) 208, 605
AgsI TTSAA 5 cut(s) 268, 352, 651, 850, 1118
AjnI CCWGG 2 cut(s) 289, 604
AluBI AGCT 5 cut(s) 78, 961, 1041, 1094, 1121
AluI AGCT 5 cut(s) 78, 961, 1041, 1094, 1121
Alw26I GTCTC 1 cut(s) 290
ApeKI GCWGC 2 cut(s) 967, 1094
ApoI RAATTY 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 982
AsuHPI GGTGA 3 cut(s) 603, 697, 1070
AsuII TTCGAA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 982
BaeGI GKGCMC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 1080
BbvI GCAGC 2 cut(s) 954, 1081
BccI CCATC 6 cut(s) 390, 635, 718, 928, 973, 997
BciT130I CCWGG 2 cut(s) 291, 606
BclI TGATCA 2 cut(s) 46, 88
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 2 cut(s) 576, 962
BfmI CTRYAG 1 cut(s) 1036
BisI GCNGC 3 cut(s) 968, 1084, 1095
BlsI GCNGC 3 cut(s) 969, 1085, 1096
Bme1390I CCNGG 2 cut(s) 291, 606
Bme18I GGWCC 1 cut(s) 982
BmgT120I GGNCC 1 cut(s) 982
BmiI GGNNCC 2 cut(s) 918, 1082
BmrFI CCNGG 2 cut(s) 291, 606
BmrI ACTGGG 2 cut(s) 120, 1025
BmsI GCATC 1 cut(s) 444
BmuI ACTGGG 2 cut(s) 120, 1025
Bpu14I TTCGAA 1 cut(s) 344
BsaHI GRCGYC 2 cut(s) 703, 1032
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 605
Bse1I ACTGG 4 cut(s) 15, 126, 1020, 1053
BseBI CCWGG 2 cut(s) 291, 606
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 5 cut(s) 67, 412, 550, 920, 984
BseLI CCNNNNNNNGG 2 cut(s) 208, 605
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 4 cut(s) 15, 126, 1020, 1053
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 2 cut(s) 954, 1081
BshNI GGYRCC 1 cut(s) 1080
BslI CCNNNNNNNGG 2 cut(s) 208, 605
BsmAI GTCTC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 577
Bsp119I TTCGAA 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 3 cut(s) 46, 88, 827
BspACI CCGC 3 cut(s) 743, 1020, 1084
BspCNI CTCAG 1 cut(s) 381
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 2 cut(s) 918, 1082
BspT104I TTCGAA 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 1080
BsrI ACTGG 4 cut(s) 15, 126, 1020, 1053
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 3 cut(s) 46, 88, 827
BssNI GRCGYC 2 cut(s) 703, 1032
Bst2UI CCWGG 2 cut(s) 291, 606
Bst4CI ACNGT 3 cut(s) 58, 552, 993
Bst6I CTCTTC 2 cut(s) 407, 845
BstACI GRCGYC 2 cut(s) 703, 1032
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 972
BstDEI CTNAG 4 cut(s) 79, 389, 729, 864
BstF5I GGATG 5 cut(s) 67, 412, 550, 920, 984
BstKTI GATC 3 cut(s) 49, 91, 830
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 3 cut(s) 46, 88, 827
BstMWI GCNNNNNNNGC 2 cut(s) 967, 1038
BstNI CCWGG 2 cut(s) 291, 606
BstSCI CCNGG 2 cut(s) 289, 604
BstSFI CTRYAG 1 cut(s) 1036
BstSLI GKGCMC 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 954, 1081
BtsCI GGATG 5 cut(s) 67, 412, 550, 920, 984
BtsIMutI CAGTG 5 cut(s) 22, 63, 133, 998, 1060
Cac8I GCNNGC 1 cut(s) 972
CciI TCATGA 1 cut(s) 940
Cfr13I GGNCC 1 cut(s) 982
CseI GACGC 2 cut(s) 711, 1021
Csp6I GTAC 2 cut(s) 431, 591
CspCI CAANNNNNGTGG 2 cut(s) 766, 801
CviAII CATG 6 cut(s) 257, 310, 326, 511, 560, 941
CviJI RGCY 9 cut(s) 78, 445, 609, 934, 961, 1012, 1041, 1094, 1121
CviKI_1 RGCY 9 cut(s) 78, 445, 609, 934, 961, 1012, 1041, 1094, 1121
CviQI GTAC 2 cut(s) 431, 591
DdeI CTNAG 4 cut(s) 79, 389, 729, 864
DpnI GATC 3 cut(s) 48, 90, 829
DpnII GATC 3 cut(s) 46, 88, 827
Eam1104I CTCTTC 2 cut(s) 407, 845
EarI CTCTTC 2 cut(s) 407, 845
Eco32I GATATC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 982
Eco57I CTGAAG 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 289, 604
EcoRV GATATC 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 6 cut(s) 260, 313, 329, 514, 563, 944
FatI CATG 6 cut(s) 256, 309, 325, 510, 559, 940
FauI CCCGC 1 cut(s) 1013
FauNDI CATATG 1 cut(s) 163
FbaI TGATCA 2 cut(s) 46, 88
FblI GTMKAC 1 cut(s) 1035
Fnu4HI GCNGC 3 cut(s) 968, 1084, 1095
FokI GGATG 5 cut(s) 74, 419, 557, 907, 991
Fsp4HI GCNGC 3 cut(s) 968, 1084, 1095
FspBI CTAG 2 cut(s) 576, 962
GluI GCNGC 3 cut(s) 968, 1084, 1095
HgaI GACGC 2 cut(s) 711, 1021
Hin1I GRCGYC 2 cut(s) 703, 1032
Hin1II CATG 6 cut(s) 260, 313, 329, 514, 563, 944
HincII GTYRAC 1 cut(s) 665
HindII GTYRAC 1 cut(s) 665
HindIII AAGCTT 1 cut(s) 1119
HinfI GANTC 8 cut(s) 20, 65, 146, 198, 494, 563, 860, 1109
HphI GGTGA 3 cut(s) 603, 697, 1070
Hpy166II GTNNAC 3 cut(s) 665, 996, 1036
Hpy188I TCNGA 3 cut(s) 25, 499, 1108
Hpy188III TCNNGA 6 cut(s) 92, 362, 388, 825, 831, 941
Hpy8I GTNNAC 3 cut(s) 665, 996, 1036
Hpy99I CGWCG 2 cut(s) 990, 993
HpyAV CCTTC 4 cut(s) 397, 811, 938, 944
HpyCH4III ACNGT 3 cut(s) 58, 552, 993
HpyCH4IV ACGT 2 cut(s) 636, 781
HpyCH4V TGCA 6 cut(s) 118, 227, 296, 457, 510, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 967, 1038
HpyF3I CTNAG 4 cut(s) 79, 389, 729, 864
HpySE526I ACGT 2 cut(s) 636, 781
Hsp92I GRCGYC 2 cut(s) 703, 1032
Hsp92II CATG 6 cut(s) 260, 313, 329, 514, 563, 944
Ksp22I TGATCA 2 cut(s) 46, 88
Kzo9I GATC 3 cut(s) 46, 88, 827
LmnI GCTCC 2 cut(s) 211, 1091
LpnPI CCDG 9 cut(s) 28, 139, 276, 303, 401, 591, 618, 1001, 1066
Lsp1109I GCAGC 2 cut(s) 954, 1081
LweI GCATC 1 cut(s) 444
MaeI CTAG 2 cut(s) 576, 962
MaeII ACGT 2 cut(s) 636, 781
MaeIII GTNAC 4 cut(s) 419, 632, 1058, 1100
MalI GATC 3 cut(s) 48, 90, 829
MboI GATC 3 cut(s) 46, 88, 827
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 4 cut(s) 191, 368, 463, 482
MlyI GAGTC 1 cut(s) 572
MnlI CCTC 8 cut(s) 19, 94, 151, 393, 408, 827, 846, 877
Mph1103I ATGCAT 1 cut(s) 229
MseI TTAA 3 cut(s) 371, 477, 956
MspR9I CCNGG 2 cut(s) 291, 606
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 2 cut(s) 291, 606
MwoI GCNNNNNNNGC 2 cut(s) 967, 1038
NdeI CATATG 1 cut(s) 163
NdeII GATC 3 cut(s) 46, 88, 827
NlaIII CATG 6 cut(s) 260, 313, 329, 514, 563, 944
NlaIV GGNNCC 2 cut(s) 918, 1082
NmuCI GTSAC 3 cut(s) 419, 1058, 1100
NsiI ATGCAT 1 cut(s) 229
NspV TTCGAA 1 cut(s) 344
PagI TCATGA 1 cut(s) 940
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 7 cut(s) 20, 65, 146, 198, 494, 860, 1109
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 3 cut(s) 969, 1085, 1096
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
Psp1406I AACGTT 1 cut(s) 636
Psp6I CCWGG 2 cut(s) 289, 604
PspGI CCWGG 2 cut(s) 289, 604
PspN4I GGNNCC 2 cut(s) 918, 1082
PspPI GGNCC 1 cut(s) 982
RsaI GTAC 2 cut(s) 432, 592
RsaNI GTAC 2 cut(s) 431, 591
SaqAI TTAA 3 cut(s) 371, 477, 956
SatI GCNGC 3 cut(s) 968, 1084, 1095
Sau3AI GATC 3 cut(s) 46, 88, 827
Sau96I GGNCC 1 cut(s) 982
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 2 cut(s) 291, 606
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 1 cut(s) 444
SfcI CTRYAG 1 cut(s) 1036
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 1 cut(s) 982
Sse9I AATT 4 cut(s) 191, 368, 463, 482
SsiI CCGC 3 cut(s) 743, 1020, 1084
SspI AATATT 2 cut(s) 114, 655
SspMI CTAG 2 cut(s) 576, 962
StyD4I CCNGG 2 cut(s) 289, 604
TaaI ACNGT 3 cut(s) 58, 552, 993
TaiI ACGT 2 cut(s) 639, 784
TaqI TCGA 2 cut(s) 344, 361
TaqII GACCGA 1 cut(s) 999
TasI AATT 4 cut(s) 191, 368, 463, 482
TauI GCSGC 1 cut(s) 1086
TfiI GAWTC 7 cut(s) 20, 65, 146, 198, 494, 860, 1109
Tru1I TTAA 3 cut(s) 371, 477, 956
Tru9I TTAA 3 cut(s) 371, 477, 956
TscAI CASTG 5 cut(s) 22, 63, 133, 1005, 1060
TseFI GTSAC 3 cut(s) 419, 1058, 1100
TseI GCWGC 2 cut(s) 967, 1094
Tsp45I GTSAC 3 cut(s) 419, 1058, 1100
TspDTI ATGAA 9 cut(s) 57, 234, 273, 381, 561, 753, 816, 873, 957
TspRI CASTG 5 cut(s) 22, 63, 133, 1005, 1060
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 982
XapI RAATTY 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 1035
XspI CTAG 2 cut(s) 576, 962
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.