Rh6BG170300

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000252
Physical Location & Seq
Reverse (-)
28175068 .. 28175579
512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG170300.1

Sequence Viewer

Length: 234 bp
ATGCAGAAGAATTTTGATGACATTAAGGAGCTAGCATACAATTCTGAAGATAAGTGCATGATTGTTATGACTTGTTTGCATAACTTAAAGGATGAACTATCCAAACATGAGTCCAAGAACATTGGTGCTAGTGGTGGTGCTAAACCAATTTCTGGCTCACCTATCAATAGAAATGGGACTGTCGACTTTCATGGGGTCAAAATCAAGAGGTCGCCCGCTATTGAAAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

77

Amino Acids

8.5

Weight (kDa)

7.8

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 152
AccI GTMKAC 1 cut(s) 183
AciI CCGC 1 cut(s) 216
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
ApoI RAATTY 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 150
AsuNHI GCTAGC 1 cut(s) 31
BfaI CTAG 2 cut(s) 32, 129
BmtI GCTAGC 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 190
BspACI CCGC 1 cut(s) 216
BspOI GCTAGC 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 33, 216
BstF5I GGATG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 33, 216
CviAII CATG 3 cut(s) 58, 107, 191
CviJI RGCY 2 cut(s) 31, 156
CviKI_1 RGCY 2 cut(s) 31, 156
Eco57I CTGAAG 1 cut(s) 66
FaeI CATG 3 cut(s) 61, 110, 194
FaiI YATR 6 cut(s) 37, 59, 68, 81, 108, 192
FaqI GGGAC 1 cut(s) 190
FatI CATG 3 cut(s) 57, 106, 190
FauI CCCGC 1 cut(s) 223
FblI GTMKAC 1 cut(s) 183
FokI GGATG 1 cut(s) 104
FspBI CTAG 2 cut(s) 32, 129
Hin1II CATG 3 cut(s) 61, 110, 194
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 1 cut(s) 110
HphI GGTGA 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 3 cut(s) 4, 57, 79
Hsp92II CATG 3 cut(s) 61, 110, 194
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 1 cut(s) 138
MaeI CTAG 2 cut(s) 32, 129
MboII GAAGA 2 cut(s) 19, 59
MluCI AATT 3 cut(s) 10, 40, 147
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 1 cut(s) 201
MseI TTAA 2 cut(s) 24, 86
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 3 cut(s) 61, 110, 194
PflMI CCANNNNNTGG 1 cut(s) 152
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
SalI GTCGAC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 24, 86
SchI GAGTC 1 cut(s) 119
SetI ASST 3 cut(s) 33, 163, 212
Sse9I AATT 3 cut(s) 10, 40, 147
SsiI CCGC 1 cut(s) 216
SspMI CTAG 2 cut(s) 32, 129
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 183
TasI AATT 3 cut(s) 10, 40, 147
Tru1I TTAA 2 cut(s) 24, 86
Tru9I TTAA 2 cut(s) 24, 86
TspDTI ATGAA 2 cut(s) 108, 179
Van91I CCANNNNNTGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 2 cut(s) 32, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.