Rh6AG165100

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000252
Physical Location & Seq
Reverse (-)
26359409 .. 26362270
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG165100.1

Sequence Viewer

Length: 639 bp
ATGGAACAATCGTCCAACGATTCGGAGGACGTTATTCTCACTAATGATGAAGGAACAGTGGATGATTCATTAAAGAGCTTAGAGGATGATCAAGAAAATGAGGAGGAAGAAATTATTCTCACTAATGACCAAGGAACAGTGGATGATTCATCAAAGAGCTTAGAGAATGATCAAGAAAATGAGGTGGAAGAAATAATGCGAGTGCCCAGTGTTGAGATGAGTTTTGATTCTATTGATGAGACATATGACTATTATAGAAAATATGGGAAGCAATTAGGATTCCCAGATGAACTATCCAAACACGAGTCCAAGAACATTGGTACTAGTGGTGGTGCTAAACCAATTCCTGGCTCACCTATCAATAGAAATGGGATTGTCGACTTTGATGGTATTTCAAATCCAAGTCAACATATACTTACTCCATTGGTAAATAAGAGAAAAGGTCGCCCACCATCTAAAAGGAAGGTATCTAAGGTAGAGGAAGAGGGGTCAAAATCAAGAGGTCGCCCGCCATTGAAAAAGACTGAATCTAAAAAAGAGCAAGAGGTCAAAAACAAACAAATTAGAAGAAATAATGTTTCATCCAATAAAAAGCCTAATCATGAAGGAGAAGGATTGCCGGTTTTATCACCCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

212

Amino Acids

23.7

Weight (kDa)

4.88

Isoelectric Point (pI)

67.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 347
AccI GTMKAC 1 cut(s) 378
AciI CCGC 1 cut(s) 509
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 2 cut(s) 396, 517
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 2 cut(s) 78, 159
AluI AGCT 2 cut(s) 78, 159
Alw26I GTCTC 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 345, 621
BaeGI GKGCMC 1 cut(s) 207
BauI CACGAG 1 cut(s) 302
BccI CCATC 2 cut(s) 380, 460
BciT130I CCWGG 1 cut(s) 348
BclI TGATCA 2 cut(s) 88, 169
BcoDI GTCTC 1 cut(s) 233
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 348
BmrI ACTGGG 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 1 cut(s) 619
Bse1I ACTGG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 4 cut(s) 67, 91, 148, 581
BseLI CCNNNNNNNGG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 116
BseSI GKGCMC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 620
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 88, 169
BspACI CCGC 1 cut(s) 509
BspHI TCATGA 1 cut(s) 601
BsrFI RCCGGY 1 cut(s) 619
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 88, 169
BssSI CACGAG 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 130
Bst2BI CACGAG 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 58, 139
Bst6I CTCTTC 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 3 cut(s) 79, 160, 471
BstF5I GGATG 4 cut(s) 67, 91, 148, 581
BstKTI GATC 2 cut(s) 91, 172
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 88, 169
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 207
BtsCI GGATG 4 cut(s) 67, 91, 148, 581
BtsIMutI CAGTG 3 cut(s) 63, 144, 214
Cac8I GCNNGC 1 cut(s) 509
CciI TCATGA 1 cut(s) 601
Cfr10I RCCGGY 1 cut(s) 619
Csp6I GTAC 1 cut(s) 321
CviAII CATG 1 cut(s) 602
CviJI RGCY 4 cut(s) 78, 159, 351, 595
CviKI_1 RGCY 4 cut(s) 78, 159, 351, 595
CviQI GTAC 1 cut(s) 321
DdeI CTNAG 3 cut(s) 79, 160, 471
DpnI GATC 2 cut(s) 90, 171
DpnII GATC 2 cut(s) 88, 169
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 605
FaiI YATR 8 cut(s) 244, 246, 255, 264, 411, 413, 603, 637
FatI CATG 1 cut(s) 601
FauI CCCGC 1 cut(s) 516
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 2 cut(s) 88, 169
FblI GTMKAC 1 cut(s) 378
FokI GGATG 4 cut(s) 74, 98, 155, 568
FspBI CTAG 1 cut(s) 324
HapII CCGG 1 cut(s) 620
Hin1II CATG 1 cut(s) 605
HincII GTYRAC 2 cut(s) 379, 407
HindII GTYRAC 2 cut(s) 379, 407
HinfI GANTC 7 cut(s) 20, 65, 146, 227, 279, 305, 527
HpaII CCGG 1 cut(s) 620
HphI GGTGA 2 cut(s) 345, 621
Hpy166II GTNNAC 2 cut(s) 379, 407
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 4 cut(s) 92, 173, 498, 602
Hpy8I GTNNAC 2 cut(s) 379, 407
HpyAV CCTTC 4 cut(s) 44, 457, 599, 605
HpyCH4III ACNGT 2 cut(s) 58, 139
HpyCH4IV ACGT 1 cut(s) 30
HpyF3I CTNAG 3 cut(s) 79, 160, 471
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 1 cut(s) 605
Ksp22I TGATCA 2 cut(s) 88, 169
Kzo9I GATC 2 cut(s) 88, 169
LpnPI CCDG 5 cut(s) 220, 297, 333, 360, 633
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 30
MalI GATC 2 cut(s) 90, 171
MboI GATC 2 cut(s) 88, 169
MboII GAAGA 4 cut(s) 119, 200, 494, 579
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 4 cut(s) 111, 272, 342, 561
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 9 cut(s) 19, 76, 94, 97, 175, 472, 478, 494, 538
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 1 cut(s) 71
MspI CCGG 1 cut(s) 620
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
NdeI CATATG 1 cut(s) 244
NdeII GATC 2 cut(s) 88, 169
NlaIII CATG 1 cut(s) 605
PagI TCATGA 1 cut(s) 601
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 6 cut(s) 20, 65, 146, 227, 279, 527
PflMI CCANNNNNTGG 1 cut(s) 347
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
SalI GTCGAC 1 cut(s) 377
SaqAI TTAA 1 cut(s) 71
Sau3AI GATC 2 cut(s) 88, 169
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 207
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 4 cut(s) 111, 272, 342, 561
SsiI CCGC 1 cut(s) 509
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 2 cut(s) 58, 139
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 378
TasI AATT 4 cut(s) 111, 272, 342, 561
TfiI GAWTC 6 cut(s) 20, 65, 146, 227, 279, 527
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 3 cut(s) 63, 144, 214
TspDTI ATGAA 6 cut(s) 57, 63, 138, 303, 570, 618
TspRI CASTG 3 cut(s) 63, 144, 214
Van91I CCANNNNNTGG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 378
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.