Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000252

Physical Location & Seq

Genomic Coordinates Forward (+)

39293471 .. 39293662

Gene Structure 192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0321200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGCTTTTTTGAGTATCTCCTTCATCTTAACTCTTTTATGCCTTGTGGGTTATCAGCTTTTGTGCCTAATGGACCTCGAGGACGATTACATCAACTCATATGATTCATCATCTCGGATAAACCGTACTGTTTTGCCAGAGTTTATCGTTCAAGGAGTTTTCTGCGTCATTCTTTTTATAACGAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

63

Amino Acids

7.26

Weight (kDa)

4.52

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cornichon	PF03311	5 - 63	6.7e-17	Cornichon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80010
fragaria_vesca	FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica	MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica	Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis	pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis	RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata	RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora	Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa	Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha	Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana	Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AbsI	CCTCGAGG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	152
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	125, 130
BstMAI	GTCTC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	126
CviJI	RGCY	2 cut(s)	5, 58
CviKI_1	RGCY	2 cut(s)	5, 58
CviQI	GTAC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	77
FaiI	YATR	4 cut(s)	40, 100, 102, 179
FauNDI	CATATG	1 cut(s)	100
HgaI	GACGC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	125, 130
LpnPI	CCDG	1 cut(s)	150
MnlI	CCTC	2 cut(s)	73, 86
MseI	TTAA	1 cut(s)	29
NdeI	CATATG	1 cut(s)	100
PaeR7I	CTCGAG	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	73
PspXI	VCTCGAGB	1 cut(s)	77
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	29
Sau96I	GGNCC	1 cut(s)	73
SetI	ASST	2 cut(s)	60, 78
Sfr274I	CTCGAG	1 cut(s)	77
SgeI	CNNG	6 cut(s)	56, 89, 91, 126, 149, 164
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	125, 130
TaqI	TCGA	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	13, 96
VpaK11BI	GGWCC	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.