Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001385.1

Orthogroup ID

OG0000252

Physical Location & Seq

Genomic Coordinates Forward (+)

9452 .. 12736

Gene Structure 3285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001385.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgccaaagccgcagggacggcaatggtacgagtgcatgaccatacggagcacaaaaacggaaaccccatttacgcttgagcttttggtcagaccagcgcccactcttcactcttgttgctcccccgagatctctcatcagatggatgaagtttctctcaacacggagccagcgggcgaggatgatgctgatgggtatgagattgaaggagactgtgcaatgacagagtttgtaagtcaaaatggcattatgcaaggagagaatcctctccctccttcggctggaatggagttcgattcttatgaggatgtatattacttctacaattgctatgctaagcaacaggggtttggggttagagtgagtaatacatggtatagaaagagcaaggaaaggtacagaggaaagcttagctgcagtagtgcaggtttcaaaaagaagagtgaagctaatcgcccaaggccggagactagaaccggttgtccagcaatggtgaagttcaggttaatggaatccaacaggtggagaattattgaagttgagctcgagcacaaccatttgatcagtccagcaagtggcaaattttataaatcacacaagagcataggtggtggaaccaaaagatcattgcagttggatagtgctgaagaagtacaaaagataaggctattccgaaccgtgattattgattctgagggtaacagaagcatagatgttgacgaaggagaatctggtaataaagttgactactccaatcaattgaagcttaaagaaggagatgccaaagctgttcagaatttcttttctcgcttgcaattgatggatccagacttcttttatgtagtggatctaaatgagaaaggatgcttgagaaatttgttttgggctgatgcgaggagtagggttgcttacacttatttcagtgacgtagttgccattgacaccacatgcttggaaaacaaatttgaagtcccattggtctcattcagtggagtcaatcaccatggacaatctgtaatttgtctagacatatatcatactgactacttccaaagttctaaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

355

Amino Acids

40.46

Weight (kDa)

5.72

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80010
fragaria_vesca	FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica	MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica	Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis	pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis	RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata	RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora	Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa	Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha	Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana	Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	588
Acc36I	ACCTGC	1 cut(s)	416
AccB7I	CCANNNNNTGG	2 cut(s)	522, 575
AciI	CCGC	2 cut(s)	11, 173
AclWI	GGATC	3 cut(s)	818, 831, 855
AcsI	RAATTY	4 cut(s)	581, 796, 874, 962
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	3 cut(s)	29, 398, 654
AfiI	CCNNNNNNNGG	5 cut(s)	277, 281, 463, 522, 575
AgeI	ACCGGT	1 cut(s)	476
AgsI	TTSAA	5 cut(s)	206, 433, 536, 763, 968
AjuI	GAANNNNNNNTTGG	2 cut(s)	865, 897
AloI	GAACNNNNNNTCC	2 cut(s)	466, 498
AluBI	AGCT	7 cut(s)	82, 409, 414, 449, 544, 766, 788
AluI	AGCT	7 cut(s)	82, 409, 414, 449, 544, 766, 788
Alw21I	GWGCWC	3 cut(s)	53, 546, 552
Alw26I	GTCTC	3 cut(s)	204, 461, 985
AlwI	GGATC	3 cut(s)	818, 831, 855
Ama87I	CYCGRG	2 cut(s)	125, 545
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	4 cut(s)	581, 796, 874, 962
ArsI	GACNNNNNNTTYG	2 cut(s)	954, 986
AsiGI	ACCGGT	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	505, 992
AvaI	CYCGRG	2 cut(s)	125, 545
BamHI	GGATCC	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	546
Bbv12I	GWGCWC	3 cut(s)	53, 546, 552
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	3 cut(s)	136, 185, 814
BceAI	ACGGC	1 cut(s)	35
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BclI	TGATCA	1 cut(s)	561
BcoDI	GTCTC	3 cut(s)	204, 461, 985
BfaI	CTAG	2 cut(s)	471, 1025
BfmI	CTRYAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	416
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	2 cut(s)	11, 415
BlpI	GCTNAGC	2 cut(s)	336, 410
BlsI	GCNGC	2 cut(s)	12, 416
BmeT110I	CYCGRG	2 cut(s)	125, 545
BmiI	GGNNCC	3 cut(s)	168, 616, 825
BmsI	GCATC	4 cut(s)	175, 769, 854, 880
Bpu1102I	GCTNAGC	2 cut(s)	336, 410
BpuEI	CTTGAG	2 cut(s)	98, 889
BsaI	GGTCTC	1 cut(s)	985
BsaJI	CCNNGG	2 cut(s)	458, 1003
BsaWI	WCCGGW	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	5 cut(s)	277, 281, 463, 522, 575
Bse118I	RCCGGY	1 cut(s)	476
Bse3DI	GCAATG	4 cut(s)	29, 225, 495, 626
BseDI	CCNNGG	2 cut(s)	458, 1003
BseGI	GGATG	4 cut(s)	151, 187, 313, 869
BseLI	CCNNNNNNNGG	5 cut(s)	277, 281, 463, 522, 575
BseMI	GCAATG	4 cut(s)	29, 225, 495, 626
BseMII	CTCAG	1 cut(s)	684
BseRI	GAGGAG	1 cut(s)	910
BseXI	GCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	463
BshTI	ACCGGT	1 cut(s)	476
BsiHKAI	GWGCWC	3 cut(s)	53, 546, 552
BsiHKCI	CYCGRG	2 cut(s)	125, 545
BsiSI	CCGG	2 cut(s)	464, 477
BslFI	GGGAC	2 cut(s)	30, 956
BslI	CCNNNNNNNGG	5 cut(s)	277, 281, 463, 522, 575
BsmAI	GTCTC	3 cut(s)	204, 461, 985
BsmFI	GGGAC	2 cut(s)	30, 956
BsnI	GGCC	1 cut(s)	463
Bso31I	GGTCTC	1 cut(s)	985
BsoBI	CYCGRG	2 cut(s)	125, 545
Bsp1286I	GDGCHC	3 cut(s)	53, 546, 552
Bsp143I	GATC	5 cut(s)	129, 561, 623, 823, 847
Bsp1720I	GCTNAGC	2 cut(s)	336, 410
Bsp19I	CCATGG	1 cut(s)	1003
BspACI	CCGC	2 cut(s)	11, 173
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	1 cut(s)	685
BspLI	GGNNCC	3 cut(s)	168, 616, 825
BspMAI	CTGCAG	1 cut(s)	419
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	3 cut(s)	818, 831, 855
BspTNI	GGTCTC	1 cut(s)	985
BsrDI	GCAATG	4 cut(s)	29, 225, 495, 626
BsrFI	RCCGGY	1 cut(s)	476
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	458, 1003
BssMI	GATC	5 cut(s)	129, 561, 623, 823, 847
BssT1I	CCWWGG	2 cut(s)	458, 1003
Bst4CI	ACNGT	2 cut(s)	215, 679
Bst6I	CTCTTC	2 cut(s)	111, 434
BstC8I	GCNNGC	3 cut(s)	171, 175, 812
BstDEI	CTNAG	3 cut(s)	336, 410, 693
BstDSI	CCRYGG	1 cut(s)	1003
BstF5I	GGATG	4 cut(s)	151, 187, 313, 869
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	5 cut(s)	132, 564, 626, 826, 850
BstMAI	GTCTC	3 cut(s)	204, 461, 985
BstMBI	GATC	5 cut(s)	129, 561, 623, 823, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 19
BstNSI	RCATGY	1 cut(s)	951
BstSFI	CTRYAG	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	401
BstX2I	RGATCY	3 cut(s)	129, 823, 847
BstXI	CCANNNNNNTGG	1 cut(s)	952
BstYI	RGATCY	3 cut(s)	129, 823, 847
BsuRI	GGCC	1 cut(s)	463
BtgI	CCRYGG	1 cut(s)	1003
BtsCI	GGATG	4 cut(s)	151, 187, 313, 869
BtsIMutI	CAGTG	2 cut(s)	928, 994
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	3 cut(s)	171, 175, 812
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	476
Csp6I	GTAC	3 cut(s)	28, 397, 653
CspAI	ACCGGT	1 cut(s)	476
CviAII	CATG	4 cut(s)	37, 372, 948, 1004
CviQI	GTAC	3 cut(s)	28, 397, 653
DdeI	CTNAG	3 cut(s)	336, 410, 693
DpnI	GATC	5 cut(s)	131, 563, 625, 825, 849
DpnII	GATC	5 cut(s)	129, 561, 623, 823, 847
Eam1104I	CTCTTC	2 cut(s)	111, 434
EarI	CTCTTC	2 cut(s)	111, 434
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	2 cut(s)	458, 1003
Eco24I	GRGCYC	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	985
Eco53kI	GAGCTC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	666
Eco88I	CYCGRG	2 cut(s)	125, 545
EcoICRI	GAGCTC	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	458, 1003
EcoT38I	GRGCYC	1 cut(s)	546
ErhI	CCWWGG	2 cut(s)	458, 1003
FaeI	CATG	4 cut(s)	40, 375, 951, 1007
FaqI	GGGAC	2 cut(s)	30, 956
FatI	CATG	4 cut(s)	36, 371, 947, 1003
FauI	CCCGC	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	2 cut(s)	11, 415
FokI	GGATG	4 cut(s)	158, 194, 320, 876
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	2 cut(s)	11, 415
FspBI	CTAG	2 cut(s)	471, 1025
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	11, 415
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	463
HapII	CCGG	2 cut(s)	464, 477
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	4 cut(s)	40, 375, 951, 1007
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	2 cut(s)	718, 745
HindII	GTYRAC	2 cut(s)	718, 745
HindIII	AAGCTT	2 cut(s)	407, 764
HinfI	GANTC	6 cut(s)	262, 296, 512, 689, 728, 993
HpaII	CCGG	2 cut(s)	464, 477
HphI	GGTGA	2 cut(s)	505, 992
Hpy166II	GTNNAC	2 cut(s)	718, 745
Hpy188I	TCNGA	5 cut(s)	92, 141, 674, 694, 795
Hpy188III	TCNNGA	2 cut(s)	827, 1025
Hpy8I	GTNNAC	2 cut(s)	718, 745
HpyAV	CCTTC	4 cut(s)	200, 285, 716, 767
HpyCH4III	ACNGT	2 cut(s)	215, 679
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	7 cut(s)	36, 218, 253, 417, 425, 631, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 19
HpyF3I	CTNAG	3 cut(s)	336, 410, 693
HpySE526I	ACGT	1 cut(s)	927
Hsp92II	CATG	4 cut(s)	40, 375, 951, 1007
HspAI	GCGC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	5 cut(s)	129, 561, 623, 823, 847
LmnI	GCTCC	3 cut(s)	48, 125, 166
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	4 cut(s)	175, 769, 854, 880
MaeI	CTAG	2 cut(s)	471, 1025
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	2 cut(s)	698, 923
MalI	GATC	5 cut(s)	131, 563, 625, 825, 849
MboI	GATC	5 cut(s)	129, 561, 623, 823, 847
MboII	GAAGA	3 cut(s)	98, 451, 659
MfeI	CAATTG	3 cut(s)	325, 758, 815
MflI	RGATCY	3 cut(s)	129, 823, 847
MhlI	GDGCHC	3 cut(s)	53, 546, 552
MluCI	AATT	9 cut(s)	325, 528, 581, 758, 796, 815, 874, 962, 1017
MlyI	GAGTC	1 cut(s)	1002
MmeI	TCCRAC	2 cut(s)	540, 615
MnlI	CCTC	7 cut(s)	172, 276, 282, 298, 395, 688, 888
MseI	TTAA	2 cut(s)	506, 768
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	2 cut(s)	464, 477
MunI	CAATTG	3 cut(s)	325, 758, 815
MwoI	GCNNNNNNNGC	2 cut(s)	10, 19
NcoI	CCATGG	1 cut(s)	1003
NdeII	GATC	5 cut(s)	129, 561, 623, 823, 847
NlaIII	CATG	4 cut(s)	40, 375, 951, 1007
NlaIV	GGNNCC	3 cut(s)	168, 616, 825
NmuCI	GTSAC	1 cut(s)	923
NspI	RCATGY	1 cut(s)	951
PaeR7I	CTCGAG	1 cut(s)	545
PfeI	GAWTC	5 cut(s)	262, 296, 512, 689, 728
PflMI	CCANNNNNTGG	2 cut(s)	522, 575
PinAI	ACCGGT	1 cut(s)	476
PkrI	GCNGC	2 cut(s)	12, 416
PleI	GAGTC	1 cut(s)	1001
PpsI	GAGTC	1 cut(s)	1001
PsiI	TTATAA	1 cut(s)	588
Psp124BI	GAGCTC	1 cut(s)	546
PspN4I	GGNNCC	3 cut(s)	168, 616, 825
PspXI	VCTCGAGB	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	419
PsuI	RGATCY	3 cut(s)	129, 823, 847
RsaI	GTAC	3 cut(s)	29, 398, 654
RsaNI	GTAC	3 cut(s)	28, 397, 653
SacI	GAGCTC	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	506, 768
SatI	GCNGC	2 cut(s)	11, 415
Sau3AI	GATC	5 cut(s)	129, 561, 623, 823, 847
SchI	GAGTC	1 cut(s)	1002
SduI	GDGCHC	3 cut(s)	53, 546, 552
SfaNI	GCATC	4 cut(s)	175, 769, 854, 880
SfcI	CTRYAG	1 cut(s)	415
Sfr274I	CTCGAG	1 cut(s)	545
SlaI	CTCGAG	1 cut(s)	545
SmlI	CTYRAG	3 cut(s)	77, 545, 868
SmoI	CTYRAG	3 cut(s)	77, 545, 868
Sse9I	AATT	9 cut(s)	325, 528, 581, 758, 796, 815, 874, 962, 1017
SsiI	CCGC	2 cut(s)	11, 173
SspMI	CTAG	2 cut(s)	471, 1025
SstI	GAGCTC	1 cut(s)	546
StyI	CCWWGG	2 cut(s)	458, 1003
TaaI	ACNGT	2 cut(s)	215, 679
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	2 cut(s)	294, 546
TasI	AATT	9 cut(s)	325, 528, 581, 758, 796, 815, 874, 962, 1017
TatI	WGTACW	1 cut(s)	652
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	5 cut(s)	262, 296, 512, 689, 728
Tru1I	TTAA	2 cut(s)	506, 768
Tru9I	TTAA	2 cut(s)	506, 768
TscAI	CASTG	2 cut(s)	928, 994
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	3 cut(s)	61, 74, 179
TspRI	CASTG	2 cut(s)	928, 994
Van91I	CCANNNNNTGG	2 cut(s)	522, 575
XapI	RAATTY	4 cut(s)	581, 796, 874, 962
XbaI	TCTAGA	1 cut(s)	1024
XceI	RCATGY	1 cut(s)	951
XhoI	CTCGAG	1 cut(s)	545
XspI	CTAG	2 cut(s)	471, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.