Rorug07G0340400

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000252
Physical Location & Seq
Forward (+)
37500512 .. 37501168
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0340400.1

Sequence Viewer

Length: 597 bp
ATGGATACGCTTCTAAAAGTTAAAGATTTTCTTTGGAGAGCTATATCTGTGGCCATTCCTTCCGTTCTAAATTTGTATAGAAGGAAAATCTCCTCATCACTTCTTTGTCCGATTTGCGGTGATCATGATGAATCTATTGAACATAACCTACTTCTATGCTCTTGGGTTGATCTGATATGGTTTGGGTCACCTCTTGGTATCAGAATTGAGAAAAGAAATGTCACAACAATTGATGATTGGCTATTGAGTTCTTACAATTTAATTTGGACTACAAGGTGTGGCTTTATTTACCAAAAGAAGCCGCTGACTCCTCTGTTGATTATCAGAAGTGGAGCAAATTTGGCTTTTGAATATTGGGGAACAAGAAGCTTGAACTCAGTCACTCCGCTTCAACCCCCTGCTCAATCATCCAGATGGATCCCTCCCCCTCCTAGGTTCGTAAAAATCAATTGCAATGCAGCATGGTCTGGTTCCTCCTCTGTTTGTGGTTTAGGAGTGATGATCCTGAATCACCAATGTGCTGTGATGGGAGGCTCTGCTAGATCGATTTGCTGCAACTCTGTTCCTGTTAACGTTAGTGATCCGTGGGATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

198

Amino Acids

22.12

Weight (kDa)

8.78

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 5 - 60 9.8e-10 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 117, 302, 386
AclI AACGTT 1 cut(s) 573
AclWI GGATC 4 cut(s) 412, 425, 496, 575
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 2 cut(s) 70, 337
AfiI CCNNNNNNNGG 2 cut(s) 116, 432
AgsI TTSAA 4 cut(s) 140, 350, 373, 392
AleI CACNNNNGTG 1 cut(s) 516
AluBI AGCT 2 cut(s) 41, 369
AluI AGCT 2 cut(s) 41, 369
AlwI GGATC 4 cut(s) 412, 425, 496, 575
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 458, 552
ApoI RAATTY 2 cut(s) 70, 337
AspA2I CCTAGG 1 cut(s) 431
AsuHPI GGTGA 3 cut(s) 131, 180, 503
AvrII CCTAGG 1 cut(s) 431
BalI TGGCCA 1 cut(s) 53
BamHI GGATCC 1 cut(s) 417
BbvI GCAGC 2 cut(s) 470, 539
BccI CCATC 2 cut(s) 408, 520
BclI TGATCA 1 cut(s) 121
BfaI CTAG 3 cut(s) 432, 540, 595
BisI GCNGC 3 cut(s) 302, 459, 553
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 3 cut(s) 303, 460, 554
BmiI GGNNCC 2 cut(s) 419, 472
Bsa29I ATCGAT 1 cut(s) 545
BsaJI CCNNGG 2 cut(s) 431, 584
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 432
Bse3DI GCAATG 1 cut(s) 460
BseCI ATCGAT 1 cut(s) 545
BseDI CCNNGG 2 cut(s) 431, 584
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 2 cut(s) 116, 432
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 390
BseRI GAGGAG 3 cut(s) 82, 300, 466
BseXI GCAGC 2 cut(s) 470, 539
BshFI GGCC 1 cut(s) 53
BshVI ATCGAT 1 cut(s) 545
BslI CCNNNNNNNGG 2 cut(s) 116, 432
BsnI GGCC 1 cut(s) 53
Bsp143I GATC 7 cut(s) 121, 169, 417, 501, 542, 580, 589
BspACI CCGC 3 cut(s) 117, 302, 386
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 389
BspDI ATCGAT 1 cut(s) 545
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 419, 472
BspPI GGATC 4 cut(s) 412, 425, 496, 575
BsrDI GCAATG 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 431, 584
BssMI GATC 7 cut(s) 121, 169, 417, 501, 542, 580, 589
BssT1I CCWWGG 1 cut(s) 431
BstDEI CTNAG 1 cut(s) 376
BstDSI CCRYGG 1 cut(s) 584
BstEII GGTNACC 1 cut(s) 186
BstF5I GGATG 1 cut(s) 407
BstKTI GATC 7 cut(s) 124, 172, 420, 504, 545, 583, 592
BstMBI GATC 7 cut(s) 121, 169, 417, 501, 542, 580, 589
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 470, 539
BstX2I RGATCY 2 cut(s) 417, 589
BstYI RGATCY 2 cut(s) 417, 589
Bsu15I ATCGAT 1 cut(s) 545
BsuRI GGCC 1 cut(s) 53
BsuTUI ATCGAT 1 cut(s) 545
BtgI CCRYGG 1 cut(s) 584
BtsCI GGATG 1 cut(s) 407
CciI TCATGA 1 cut(s) 124
ClaI ATCGAT 1 cut(s) 545
CviAII CATG 2 cut(s) 125, 462
CviJI RGCY 8 cut(s) 41, 53, 241, 282, 301, 344, 369, 534
CviKI_1 RGCY 8 cut(s) 41, 53, 241, 282, 301, 344, 369, 534
DdeI CTNAG 1 cut(s) 376
DpnI GATC 7 cut(s) 123, 171, 419, 503, 544, 582, 591
DpnII GATC 7 cut(s) 121, 169, 417, 501, 542, 580, 589
EaeI YGGCCR 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 431
Eco91I GGTNACC 1 cut(s) 186
EcoO65I GGTNACC 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 2 cut(s) 128, 465
FaiI YATR 7 cut(s) 44, 78, 126, 144, 157, 178, 463
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 2 cut(s) 124, 461
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 302, 459, 553
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 3 cut(s) 302, 459, 553
FspBI CTAG 3 cut(s) 432, 540, 595
GluI GCNGC 3 cut(s) 302, 459, 553
HaeIII GGCC 1 cut(s) 53
Hin1II CATG 2 cut(s) 128, 465
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 3 cut(s) 131, 307, 508
HpaI GTTAAC 1 cut(s) 571
HphI GGTGA 3 cut(s) 131, 180, 503
Hpy166II GTNNAC 1 cut(s) 571
Hpy188I TCNGA 4 cut(s) 111, 174, 203, 326
Hpy188III TCNNGA 3 cut(s) 125, 411, 505
Hpy8I GTNNAC 1 cut(s) 571
HpyAV CCTTC 2 cut(s) 69, 75
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 3 cut(s) 453, 458, 555
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 1 cut(s) 376
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 2 cut(s) 128, 465
Ksp22I TGATCA 1 cut(s) 121
KspAI GTTAAC 1 cut(s) 571
Kzo9I GATC 7 cut(s) 121, 169, 417, 501, 542, 580, 589
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 5 cut(s) 411, 424, 453, 518, 579
Lsp1109I GCAGC 2 cut(s) 470, 539
MaeI CTAG 3 cut(s) 432, 540, 595
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 3 cut(s) 186, 220, 379
MalI GATC 7 cut(s) 123, 171, 419, 503, 544, 582, 591
MboI GATC 7 cut(s) 121, 169, 417, 501, 542, 580, 589
MfeI CAATTG 2 cut(s) 228, 448
MflI RGATCY 2 cut(s) 417, 589
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 7 cut(s) 70, 204, 228, 256, 261, 337, 448
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 8 cut(s) 103, 201, 321, 432, 438, 484, 487, 524
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
MseI TTAA 3 cut(s) 21, 260, 570
MslI CAYNNNNRTG 2 cut(s) 412, 516
Msp20I TGGCCA 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 304
MunI CAATTG 2 cut(s) 228, 448
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeII GATC 7 cut(s) 121, 169, 417, 501, 542, 580, 589
NlaIII CATG 2 cut(s) 128, 465
NlaIV GGNNCC 2 cut(s) 419, 472
NmuCI GTSAC 3 cut(s) 186, 220, 379
OliI CACNNNNGTG 1 cut(s) 516
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 2 cut(s) 131, 508
PkrI GCNGC 3 cut(s) 303, 460, 554
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Psp1406I AACGTT 1 cut(s) 573
PspEI GGTNACC 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 419, 472
PsrI GAACNNNNNNTAC 2 cut(s) 132, 164
PsuI RGATCY 2 cut(s) 417, 589
RseI CAYNNNNRTG 2 cut(s) 412, 516
SaqAI TTAA 3 cut(s) 21, 260, 570
SatI GCNGC 3 cut(s) 302, 459, 553
Sau3AI GATC 7 cut(s) 121, 169, 417, 501, 542, 580, 589
SchI GAGTC 1 cut(s) 301
SetI ASST 7 cut(s) 43, 150, 193, 278, 371, 437, 576
SmiMI CAYNNNNRTG 2 cut(s) 412, 516
Sse9I AATT 7 cut(s) 70, 204, 228, 256, 261, 337, 448
SsiI CCGC 3 cut(s) 117, 302, 386
SspI AATATT 1 cut(s) 353
SspMI CTAG 3 cut(s) 432, 540, 595
StyI CCWWGG 1 cut(s) 431
TaiI ACGT 1 cut(s) 576
TaqI TCGA 1 cut(s) 545
TasI AATT 7 cut(s) 70, 204, 228, 256, 261, 337, 448
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 2 cut(s) 131, 508
Tru1I TTAA 3 cut(s) 21, 260, 570
Tru9I TTAA 3 cut(s) 21, 260, 570
TseFI GTSAC 3 cut(s) 186, 220, 379
TseI GCWGC 2 cut(s) 458, 552
Tsp45I GTSAC 3 cut(s) 186, 220, 379
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 2 cut(s) 52, 573
XapI RAATTY 2 cut(s) 70, 337
XmaJI CCTAGG 1 cut(s) 431
XspI CTAG 3 cut(s) 432, 540, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.