RLG00000014630

Protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
55567212 .. 55567866
655 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014630

Sequence Viewer

Length: 546 bp
ATGACTCCAGATAAATATATCCTGAGAAGATGGAGGAAGGATGTGAAGAGGTGTCACACAAGGGTTAAAATTAGTTATGGTGGATGGGATGCTAGTTCTGAATCACAAAGGCTTGACAAGATGCAGAAGACTTTTGATGACATTAAAGAATTAGCATACGATTATGAAGATAAGTGCATGATTGTTATGACTTGGTTGCATAACCTAAAGGATGAACTGTCCAAACATGAGTCCAAGAATGCTAGTGTTTGTGGTGGTGCTGAACCAATGCCTGGGTCACCTATCAATAGATATGGGAGTGACGTTGATGGTATTTCAAATCCGGGTCAACATATACTTACTCCATTAGTAAATAAGAGAAAAGGACGCCCACCATCTAAAAGGAAGGTTTCTAAGGTAGAAGAAGCAGTAAGAAAGAAACAGAAAAGAGAACAAAAGAACAAACATCCTGGGAACAATATTAATGAAGAAGTAGGAGTGAAGGGGTCAAGATCAAGAGGTCGTCTGCCATTGAAGAGGAATGAATCTAAGAAAGAGCAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

182

Amino Acids

20.88

Weight (kDa)

9.84

Isoelectric Point (pI)

64.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 2 cut(s) 318, 514
AjnI CCWGG 2 cut(s) 271, 448
AseI ATTAAT 1 cut(s) 462
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 134
BccI CCATC 4 cut(s) 24, 78, 302, 382
BciT130I CCWGG 2 cut(s) 273, 450
BcnI CCSGG 1 cut(s) 324
BfaI CTAG 2 cut(s) 93, 243
Bme1390I CCNGG 3 cut(s) 273, 324, 450
BmrFI CCNGG 3 cut(s) 273, 324, 450
BmsI GCATC 2 cut(s) 79, 111
BpiI GAAGAC 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 272, 449
Bsc4I CCNNNNNNNGG 1 cut(s) 272
BseBI CCWGG 2 cut(s) 273, 450
BseDI CCNNGG 2 cut(s) 272, 449
BseGI GGATG 5 cut(s) 46, 89, 94, 217, 445
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 272
BsmI GAATGC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 491
BspCNI CTCAG 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 272, 449
BssMI GATC 1 cut(s) 491
BssNI GRCGYC 1 cut(s) 367
Bst2UI CCWGG 2 cut(s) 273, 450
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 2 cut(s) 41, 509
BstACI GRCGYC 1 cut(s) 367
BstDEI CTNAG 3 cut(s) 23, 393, 528
BstEII GGTNACC 1 cut(s) 276
BstF5I GGATG 5 cut(s) 46, 89, 94, 217, 445
BstKTI GATC 1 cut(s) 494
BstMBI GATC 1 cut(s) 491
BstNI CCWGG 2 cut(s) 273, 450
BstPI GGTNACC 1 cut(s) 276
BstSCI CCNGG 3 cut(s) 271, 322, 448
BstV2I GAAGAC 1 cut(s) 134
BtsCI GGATG 5 cut(s) 46, 89, 94, 217, 445
CseI GACGC 1 cut(s) 375
CviAII CATG 2 cut(s) 178, 227
CviJI RGCY 1 cut(s) 112
CviKI_1 RGCY 1 cut(s) 112
DdeI CTNAG 3 cut(s) 23, 393, 528
DpnI GATC 1 cut(s) 493
DpnII GATC 1 cut(s) 491
Eam1104I CTCTTC 2 cut(s) 41, 509
EarI CTCTTC 2 cut(s) 41, 509
Eco91I GGTNACC 1 cut(s) 276
EcoO65I GGTNACC 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 271, 448
FaeI CATG 2 cut(s) 181, 230
FatI CATG 2 cut(s) 177, 226
FokI GGATG 5 cut(s) 53, 96, 101, 224, 432
FspBI CTAG 2 cut(s) 93, 243
HapII CCGG 1 cut(s) 323
HgaI GACGC 1 cut(s) 375
Hin1I GRCGYC 1 cut(s) 367
Hin1II CATG 2 cut(s) 181, 230
HincII GTYRAC 1 cut(s) 329
HindII GTYRAC 1 cut(s) 329
HinfI GANTC 4 cut(s) 4, 101, 230, 524
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 4 cut(s) 8, 22, 489, 495
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 31, 379, 475
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 124, 177, 199
HpyF3I CTNAG 3 cut(s) 23, 393, 528
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 367
Hsp92II CATG 2 cut(s) 181, 230
Kzo9I GATC 1 cut(s) 491
LpnPI CCDG 7 cut(s) 21, 35, 258, 285, 336, 435, 462
LweI GCATC 2 cut(s) 79, 111
MaeI CTAG 2 cut(s) 93, 243
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 3 cut(s) 53, 276, 299
MalI GATC 1 cut(s) 493
MboI GATC 1 cut(s) 491
MboII GAAGA 7 cut(s) 39, 58, 139, 179, 413, 479, 526
MluCI AATT 2 cut(s) 69, 149
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 4 cut(s) 27, 42, 491, 510
MseI TTAA 3 cut(s) 66, 144, 462
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 3 cut(s) 273, 324, 450
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 2 cut(s) 273, 450
NciI CCSGG 1 cut(s) 324
NdeII GATC 1 cut(s) 491
NlaIII CATG 2 cut(s) 181, 230
NmuCI GTSAC 3 cut(s) 53, 276, 299
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 101, 524
PflMI CCANNNNNTGG 1 cut(s) 272
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 271, 448
PspEI GGTNACC 1 cut(s) 276
PspGI CCWGG 2 cut(s) 271, 448
SaqAI TTAA 3 cut(s) 66, 144, 462
Sau3AI GATC 1 cut(s) 491
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 3 cut(s) 273, 324, 450
SetI ASST 7 cut(s) 53, 207, 283, 306, 390, 399, 502
SfaNI GCATC 2 cut(s) 79, 111
Sse9I AATT 2 cut(s) 69, 149
SspI AATATT 1 cut(s) 460
SspMI CTAG 2 cut(s) 93, 243
StyD4I CCNGG 3 cut(s) 271, 322, 448
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 1 cut(s) 306
TasI AATT 2 cut(s) 69, 149
TfiI GAWTC 2 cut(s) 101, 524
Tru1I TTAA 3 cut(s) 66, 144, 462
Tru9I TTAA 3 cut(s) 66, 144, 462
TseFI GTSAC 3 cut(s) 53, 276, 299
Tsp45I GTSAC 3 cut(s) 53, 276, 299
TspDTI ATGAA 4 cut(s) 180, 228, 480, 537
Van91I CCANNNNNTGG 1 cut(s) 272
VspI ATTAAT 1 cut(s) 462
XspI CTAG 2 cut(s) 93, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.