Rh7BG402900

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000252
Physical Location & Seq
Forward (+)
44924257 .. 44938965
14709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG402900.1

Sequence Viewer

Length: 1278 bp
ATGGTTAGTGTCCTCCATTGTGCTGAACATAATCATGATCTTAGTACTCCAAGCAAAAGACGGTTTTTTAAAAGCTCAAGAGAATTACCGCCACATGTTAAAAAGAGGTTAGCAACAAATGATATAGCTGGAATAAGACCAAAAAAGAATTTCAATTCCTTTGTGGTTGAAGCTAGTGGACATGAGAATTTAACATTCCTAGAGAAGGATGTGAGAAATTTTCTTGATAATTTTGTGGAGCAATATGAGAATGCTTTACGAGATAAAGTTGAGAAAGAGAGTCTTGCAGATTTTCAGTCTTTCAATTCAAAGATTCCGTGTTTCACAATGTATAATATTGAGAAACAATACCATGATGCTTACACAAATGCAAAGTTCAAAGAGGTTCAGAAAGAGCTAGAAGGAAAGATGCATTGTGGCATATCATCATCTGAAAGGAATGGTACAATTATAGATATCACTGTGGATGAAGATGTAAAGATCGATACAGAAATGAGACGTGTCCCATTCATAGTTCATTTCAATGAGGACAGGTGTGAGGTGGCAGACTTGGCAGATGGCAAAGAAGAAGATTCTAACATGGTGATAGGGATATTAAATGATCTGAAAATGAAACTGACTCAAAGTAAAGTTGATTGCGAAAGAAAAGGAGACAATATTGAGTTGGTTGAGAAGACAACAGATGATGGAAAACTTTTAGAGAATGGTTGTGAAATACTTGATCCATTATCTGTTCGAAGTAAAGGTCGTCCTCCAGTCAACCGAAAACAATCTATGACCGAGCAAATTATTCGAAAAAGAAAAGAATCTGAAGCTGCAAAAATATCTAATAATAAAAATAAATTCGAGGATTCTGAAATAATGAAAAGCACTAATGATGTCTTTGGGACACAAGAAAGCATTGTACTTCAGGCATCTAAAGAGCATATAGCTCCATCTGTTCAAGACATGAAGAAGATGATTAAGACTCTCTTTGGTTGCTTCAGTGGAAAGCAACGCCAACAAAAGAGAAATAAGCTTGATCTTGAGAGAAAACTCTTTCGGAAAAAGCTTGAGACGAAGCAAACGGAAGATGAAGGCATGTCTTGGCAGAAACCATCTGCAGATGTCATGGAGAACATTCTTCAGCGTGTCAACGTAGGTGATCGCATACGGTTGAGTATCGTCTCCAAGCCTTGGAACTCAATTGTTACACGAAGAGACATTCGTGATTTCGTGGTGCTCCACATGAACTCCCCTGGTTACTACTCCCTCATCCCACAAAATGGAAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

425

Amino Acids

48.97

Weight (kDa)

8.48

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 369 - 402 1.3e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1176, 1265
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 716
AcsI RAATTY 4 cut(s) 148, 187, 217, 842
AcuI CTGAAG 4 cut(s) 831, 893, 967, 1109
AfaI GTAC 4 cut(s) 46, 445, 906, 1273
AfiI CCNNNNNNNGG 3 cut(s) 205, 1176, 1265
AflIII ACRYGT 2 cut(s) 94, 499
AgsI TTSAA 7 cut(s) 154, 170, 304, 309, 379, 523, 944
AjiI CACGTC 1 cut(s) 500
AjnI CCWGG 1 cut(s) 1237
AluBI AGCT 8 cut(s) 75, 128, 173, 397, 815, 932, 1018, 1051
AluI AGCT 8 cut(s) 75, 128, 173, 397, 815, 932, 1018, 1051
Alw21I GWGCWC 1 cut(s) 1224
Alw26I GTCTC 5 cut(s) 490, 645, 1049, 1171, 1194
AlwI GGATC 1 cut(s) 716
ApeKI GCWGC 1 cut(s) 815
ApoI RAATTY 4 cut(s) 148, 187, 217, 842
ArsI GACNNNNNNTTYG 2 cut(s) 730, 762
AsuHPI GGTGA 2 cut(s) 595, 1154
AsuII TTCGAA 2 cut(s) 736, 793
BbsI GAAGAC 1 cut(s) 680
Bbv12I GWGCWC 1 cut(s) 1224
BbvI GCAGC 1 cut(s) 802
BccI CCATC 4 cut(s) 551, 680, 943, 1105
BcgI CGANNNNNNTGC 2 cut(s) 773, 807
BciT130I CCWGG 1 cut(s) 1239
BcoDI GTCTC 5 cut(s) 490, 645, 1049, 1171, 1194
BfaI CTAG 3 cut(s) 174, 200, 398
BfmI CTRYAG 1 cut(s) 1101
BisI GCNGC 1 cut(s) 816
BlsI GCNGC 1 cut(s) 817
BmcAI AGTACT 2 cut(s) 46, 1273
Bme1390I CCNGG 1 cut(s) 1239
BmgBI CACGTC 1 cut(s) 500
BmrFI CCNGG 1 cut(s) 1239
BmsI GCATC 3 cut(s) 346, 399, 923
BpiI GAAGAC 1 cut(s) 680
BpmI CTGGAG 1 cut(s) 738
Bpu14I TTCGAA 2 cut(s) 736, 793
BpuEI CTTGAG 3 cut(s) 61, 1046, 1073
Bsa29I ATCGAT 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 1175, 1237
BsaXI ACNNNNNCTCC 2 cut(s) 1217, 1247
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 1176, 1265
Bse1I ACTGG 1 cut(s) 755
BseBI CCWGG 1 cut(s) 1239
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 1175, 1237
BseGI GGATG 3 cut(s) 214, 472, 1254
BseLI CCNNNNNNNGG 3 cut(s) 205, 1176, 1265
BseNI ACTGG 1 cut(s) 755
BseXI GCAGC 1 cut(s) 802
BshVI ATCGAT 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 1224
BslFI GGGAC 2 cut(s) 488, 901
BslI CCNNNNNNNGG 3 cut(s) 205, 1176, 1265
BsmAI GTCTC 5 cut(s) 490, 645, 1049, 1171, 1194
BsmBI CGTCTC 3 cut(s) 490, 1049, 1171
BsmFI GGGAC 2 cut(s) 488, 901
BsmI GAATGC 1 cut(s) 256
Bsp119I TTCGAA 2 cut(s) 736, 793
Bsp1286I GDGCHC 1 cut(s) 1224
Bsp143I GATC 6 cut(s) 37, 480, 601, 721, 1021, 1144
BspACI CCGC 1 cut(s) 89
BspDI ATCGAT 1 cut(s) 483
BspHI TCATGA 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 1105
BspPI GGATC 1 cut(s) 716
BspT104I TTCGAA 2 cut(s) 736, 793
BsrI ACTGG 1 cut(s) 755
BssECI CCNNGG 2 cut(s) 1175, 1237
BssMI GATC 6 cut(s) 37, 480, 601, 721, 1021, 1144
BssT1I CCWWGG 1 cut(s) 1175
Bst2UI CCWGG 1 cut(s) 1239
Bst4CI ACNGT 3 cut(s) 63, 463, 1155
Bst6I CTCTTC 1 cut(s) 1192
BstBI TTCGAA 2 cut(s) 736, 793
BstDEI CTNAG 1 cut(s) 41
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 3 cut(s) 214, 472, 1254
BstKTI GATC 6 cut(s) 40, 483, 604, 724, 1024, 1147
BstMAI GTCTC 5 cut(s) 490, 645, 1049, 1171, 1194
BstMBI GATC 6 cut(s) 37, 480, 601, 721, 1021, 1144
BstMWI GCNNNNNNNGC 1 cut(s) 551
BstNI CCWGG 1 cut(s) 1239
BstNSI RCATGY 2 cut(s) 98, 1084
BstSCI CCNGG 1 cut(s) 1237
BstSFI CTRYAG 1 cut(s) 1101
BstV1I GCAGC 1 cut(s) 802
BstV2I GAAGAC 1 cut(s) 680
Bsu15I ATCGAT 1 cut(s) 483
BsuTUI ATCGAT 1 cut(s) 483
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 3 cut(s) 214, 472, 1254
BtsIMutI CAGTG 2 cut(s) 459, 991
CciI TCATGA 1 cut(s) 34
ClaI ATCGAT 1 cut(s) 483
Csp6I GTAC 4 cut(s) 45, 444, 905, 1272
CviAII CATG 9 cut(s) 35, 95, 182, 353, 580, 949, 1081, 1111, 1228
CviJI RGCY 9 cut(s) 75, 128, 173, 397, 815, 932, 1018, 1051, 1174
CviKI_1 RGCY 9 cut(s) 75, 128, 173, 397, 815, 932, 1018, 1051, 1174
CviQI GTAC 4 cut(s) 45, 444, 905, 1272
DdeI CTNAG 1 cut(s) 41
DpnI GATC 6 cut(s) 39, 482, 603, 723, 1023, 1146
DpnII GATC 6 cut(s) 37, 480, 601, 721, 1021, 1144
DraI TTTAAA 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 1192
EarI CTCTTC 1 cut(s) 1192
Eco130I CCWWGG 1 cut(s) 1175
Eco32I GATATC 1 cut(s) 457
Eco57I CTGAAG 4 cut(s) 831, 893, 967, 1109
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 1237
EcoRV GATATC 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 1175
EcoT22I ATGCAT 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 1175
Esp3I CGTCTC 3 cut(s) 490, 1049, 1171
FaeI CATG 9 cut(s) 38, 98, 185, 356, 583, 952, 1084, 1114, 1231
FalI AAGNNNNNCTT 4 cut(s) 267, 299, 956, 988
FaqI GGGAC 2 cut(s) 488, 901
FatI CATG 9 cut(s) 34, 94, 181, 352, 579, 948, 1080, 1110, 1227
Fnu4HI GCNGC 1 cut(s) 816
FokI GGATG 3 cut(s) 221, 479, 1241
Fsp4HI GCNGC 1 cut(s) 816
FspBI CTAG 3 cut(s) 174, 200, 398
GluI GCNGC 1 cut(s) 816
GsuI CTGGAG 1 cut(s) 738
Hin1II CATG 9 cut(s) 38, 98, 185, 356, 583, 952, 1084, 1114, 1231
HincII GTYRAC 2 cut(s) 760, 1135
HindII GTYRAC 2 cut(s) 760, 1135
HindIII AAGCTT 2 cut(s) 1016, 1049
HinfI GANTC 7 cut(s) 280, 313, 572, 619, 806, 851, 967
HphI GGTGA 2 cut(s) 595, 1154
Hpy166II GTNNAC 3 cut(s) 179, 760, 1135
Hpy188I TCNGA 6 cut(s) 390, 433, 606, 811, 856, 1044
Hpy188III TCNNGA 6 cut(s) 35, 78, 224, 944, 1025, 1208
Hpy8I GTNNAC 3 cut(s) 179, 760, 1135
HpyAV CCTTC 3 cut(s) 199, 395, 1070
HpyCH4III ACNGT 3 cut(s) 63, 463, 1155
HpyCH4IV ACGT 2 cut(s) 499, 1137
HpyCH4V TGCA 5 cut(s) 287, 371, 412, 818, 1103
HpyF10VI GCNNNNNNNGC 1 cut(s) 551
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 2 cut(s) 499, 1137
Hsp92II CATG 9 cut(s) 38, 98, 185, 356, 583, 952, 1084, 1114, 1231
Kzo9I GATC 6 cut(s) 37, 480, 601, 721, 1021, 1144
LmnI GCTCC 3 cut(s) 238, 937, 1227
LpnPI CCDG 6 cut(s) 114, 517, 768, 896, 1224, 1251
Lsp1109I GCAGC 1 cut(s) 802
LweI GCATC 3 cut(s) 346, 399, 923
MaeI CTAG 3 cut(s) 174, 200, 398
MaeII ACGT 2 cut(s) 499, 1137
MaeIII GTNAC 2 cut(s) 1189, 1241
MalI GATC 6 cut(s) 39, 482, 603, 723, 1023, 1146
MboI GATC 6 cut(s) 37, 480, 601, 721, 1021, 1144
MboII GAAGA 9 cut(s) 482, 578, 581, 685, 964, 967, 1082, 1115, 1209
MfeI CAATTG 1 cut(s) 1185
MhlI GDGCHC 1 cut(s) 1224
MlyI GAGTC 3 cut(s) 289, 613, 961
MnlI CCTC 8 cut(s) 23, 99, 376, 520, 532, 762, 841, 1262
Mph1103I ATGCAT 1 cut(s) 414
MseI TTAA 5 cut(s) 69, 99, 191, 596, 963
MslI CAYNNNNRTG 2 cut(s) 33, 522
MspR9I CCNGG 1 cut(s) 1239
MunI CAATTG 1 cut(s) 1185
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 1 cut(s) 1239
MwoI GCNNNNNNNGC 1 cut(s) 551
NdeII GATC 6 cut(s) 37, 480, 601, 721, 1021, 1144
NlaIII CATG 9 cut(s) 38, 98, 185, 356, 583, 952, 1084, 1114, 1231
NsiI ATGCAT 1 cut(s) 414
NspI RCATGY 2 cut(s) 98, 1084
NspV TTCGAA 2 cut(s) 736, 793
PagI TCATGA 1 cut(s) 34
PciI ACATGT 1 cut(s) 94
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 4 cut(s) 313, 572, 806, 851
PflMI CCANNNNNTGG 2 cut(s) 1176, 1265
PkrI GCNGC 1 cut(s) 817
PleI GAGTC 3 cut(s) 288, 613, 961
PpsI GAGTC 3 cut(s) 288, 613, 961
PscI ACATGT 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 1237
PspGI CCWGG 1 cut(s) 1237
PstI CTGCAG 1 cut(s) 1105
RsaI GTAC 4 cut(s) 46, 445, 906, 1273
RsaNI GTAC 4 cut(s) 45, 444, 905, 1272
RseI CAYNNNNRTG 2 cut(s) 33, 522
SaqAI TTAA 5 cut(s) 69, 99, 191, 596, 963
SatI GCNGC 1 cut(s) 816
Sau3AI GATC 6 cut(s) 37, 480, 601, 721, 1021, 1144
ScaI AGTACT 2 cut(s) 46, 1273
SchI GAGTC 3 cut(s) 289, 613, 961
ScrFI CCNGG 1 cut(s) 1239
SduI GDGCHC 1 cut(s) 1224
SfaNI GCATC 3 cut(s) 346, 399, 923
SfcI CTRYAG 1 cut(s) 1101
SfuI TTCGAA 2 cut(s) 736, 793
SmiMI CAYNNNNRTG 2 cut(s) 33, 522
SmlI CTYRAG 3 cut(s) 76, 1025, 1052
SmoI CTYRAG 3 cut(s) 76, 1025, 1052
SsiI CCGC 1 cut(s) 89
SspI AATATT 2 cut(s) 337, 658
SspMI CTAG 3 cut(s) 174, 200, 398
StyD4I CCNGG 1 cut(s) 1237
StyI CCWWGG 1 cut(s) 1175
TaaI ACNGT 3 cut(s) 63, 463, 1155
TaiI ACGT 2 cut(s) 502, 1140
TaqI TCGA 4 cut(s) 483, 736, 793, 846
TaqII GACCGA 1 cut(s) 794
TatI WGTACW 3 cut(s) 44, 904, 1271
TfiI GAWTC 4 cut(s) 313, 572, 806, 851
Tru1I TTAA 5 cut(s) 69, 99, 191, 596, 963
Tru9I TTAA 5 cut(s) 69, 99, 191, 596, 963
TscAI CASTG 2 cut(s) 466, 991
TseI GCWGC 1 cut(s) 815
TspDTI ATGAA 8 cut(s) 483, 499, 506, 626, 878, 965, 1089, 1244
TspGWI ACGGA 2 cut(s) 306, 1082
TspRI CASTG 2 cut(s) 466, 991
Van91I CCANNNNNTGG 2 cut(s) 1176, 1265
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 4 cut(s) 148, 187, 217, 842
XceI RCATGY 2 cut(s) 98, 1084
XspI CTAG 3 cut(s) 174, 200, 398
ZrmI AGTACT 2 cut(s) 46, 1273
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.