Rroxscaffold_2G00135950

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000252
Physical Location & Seq
Reverse (-)
73480507 .. 73483589
3083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135950.1

Sequence Viewer

Length: 699 bp
ATGGAACAATCGTCCAACGATTCGGAGGGCATTATTCTCACTAATGATGAAGGAACAGTGGATGATTCATCAAAGAGCTTAGAGGATGATCAAGAAAATGAGGAGGAAGAAATTATTCTCACTAATGACCAAGGAACAGTGGATGAATCATCAAAGAGCTTAAAGATTGATCAAGAAAATGAGGTGGAAGAAATAATGCAAGATGAACTATCCAAACATGAGTCCAAGAACACTGGTGCTAGTGGTGGTGCTGAACCAATTCCTGGCTCACCTATCAATAGAAATGGGAGTGTCGACGTTGATGGTATTTCAAATCCAAGTCAACATATACTTACTCCATTGGTAAATAAGAGAAAAGGTCGCCCACCATCTAAAAGGAAGGTATCTAAGGTAGAGGAAGAGGTAAAAAAGAAACAGAAAAGAGAACAAAAGAACAAATGTGGTGGGAACAGTAGTAATGAAGAAGTAGGAGTGAAGGGGTCAAAATCAAGAGGTTGCCCGCCATTAAAAAAGACTGAATCTAAGAAAGTGCAAGAGGATCATAATTCTGAGCCTAGAGATTCTTCTAATACATTGTGTGCTTGCATTTTAAAGGTTTTATCACCCTCACAAAGTGATGTTAATCCAAAAAGAGTTCGTAAAGTATGTAATCCAGTTCGAGTGCAAATGGTGACCAGTGACTTGATTTCAACTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

232

Amino Acids

25.46

Weight (kDa)

5.25

Isoelectric Point (pI)

61.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 263
AccI GTMKAC 1 cut(s) 294
AciI CCGC 1 cut(s) 500
AclWI GGATC 1 cut(s) 546
AdeI CACNNNGTG 1 cut(s) 614
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 312, 690
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 2 cut(s) 78, 159
AluI AGCT 2 cut(s) 78, 159
AlwI GGATC 1 cut(s) 546
Asp700I GAANNNNTTC 2 cut(s) 114, 258
AsuHPI GGTGA 3 cut(s) 261, 594, 682
BccI CCATC 2 cut(s) 296, 376
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 2 cut(s) 88, 169
BfaI CTAG 3 cut(s) 240, 555, 697
Bme1390I CCNGG 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 3 cut(s) 238, 653, 675
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 3 cut(s) 67, 91, 148
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 3 cut(s) 238, 653, 675
BseRI GAGGAG 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 263
Bsp143I GATC 3 cut(s) 88, 169, 538
BspACI CCGC 1 cut(s) 500
BspCNI CTCAG 1 cut(s) 541
BspPI GGATC 1 cut(s) 546
BsrI ACTGG 3 cut(s) 238, 653, 675
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 3 cut(s) 88, 169, 538
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 3 cut(s) 58, 139, 452
Bst6I CTCTTC 1 cut(s) 393
BstC8I GCNNGC 2 cut(s) 500, 583
BstDEI CTNAG 4 cut(s) 79, 387, 522, 549
BstEII GGTNACC 1 cut(s) 670
BstF5I GGATG 3 cut(s) 67, 91, 148
BstKTI GATC 3 cut(s) 91, 172, 541
BstMBI GATC 3 cut(s) 88, 169, 538
BstNI CCWGG 1 cut(s) 264
BstPI GGTNACC 1 cut(s) 670
BstSCI CCNGG 1 cut(s) 262
BtsCI GGATG 3 cut(s) 67, 91, 148
BtsIMutI CAGTG 4 cut(s) 63, 144, 231, 682
Cac8I GCNNGC 2 cut(s) 500, 583
CspCI CAANNNNNGTGG 2 cut(s) 424, 459
CviAII CATG 1 cut(s) 218
CviJI RGCY 4 cut(s) 78, 159, 267, 553
CviKI_1 RGCY 4 cut(s) 78, 159, 267, 553
DdeI CTNAG 4 cut(s) 79, 387, 522, 549
DpnI GATC 3 cut(s) 90, 171, 540
DpnII GATC 3 cut(s) 88, 169, 538
DraI TTTAAA 1 cut(s) 591
DraIII CACNNNGTG 1 cut(s) 614
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 130
Eco91I GGTNACC 1 cut(s) 670
EcoO65I GGTNACC 1 cut(s) 670
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 221
FaiI YATR 5 cut(s) 219, 327, 329, 543, 646
FatI CATG 1 cut(s) 217
FauI CCCGC 1 cut(s) 507
FbaI TGATCA 2 cut(s) 88, 169
FblI GTMKAC 1 cut(s) 294
FokI GGATG 3 cut(s) 74, 98, 155
FspBI CTAG 3 cut(s) 240, 555, 697
Hin1II CATG 1 cut(s) 221
HincII GTYRAC 2 cut(s) 295, 323
HindII GTYRAC 2 cut(s) 295, 323
HinfI GANTC 6 cut(s) 20, 65, 146, 221, 518, 560
HphI GGTGA 3 cut(s) 261, 594, 682
Hpy166II GTNNAC 2 cut(s) 295, 323
Hpy188I TCNGA 2 cut(s) 25, 550
Hpy188III TCNNGA 3 cut(s) 92, 173, 489
Hpy8I GTNNAC 2 cut(s) 295, 323
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 44, 373, 469
HpyCH4III ACNGT 3 cut(s) 58, 139, 452
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 4 cut(s) 199, 532, 585, 664
HpyF3I CTNAG 4 cut(s) 79, 387, 522, 549
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 1 cut(s) 221
Ksp22I TGATCA 2 cut(s) 88, 169
Kzo9I GATC 3 cut(s) 88, 169, 538
LpnPI CCDG 5 cut(s) 219, 249, 276, 666, 688
MaeI CTAG 3 cut(s) 240, 555, 697
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 670, 677
MalI GATC 3 cut(s) 90, 171, 540
MboI GATC 3 cut(s) 88, 169, 538
MboII GAAGA 5 cut(s) 119, 200, 410, 473, 555
MluCI AATT 3 cut(s) 111, 258, 544
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 39
MroXI GAANNNNTTC 2 cut(s) 114, 258
MseI TTAA 4 cut(s) 161, 506, 590, 621
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
NdeII GATC 3 cut(s) 88, 169, 538
NlaIII CATG 1 cut(s) 221
NmuCI GTSAC 2 cut(s) 670, 677
PdmI GAANNNNTTC 2 cut(s) 114, 258
PfeI GAWTC 5 cut(s) 20, 65, 146, 518, 560
PflMI CCANNNNNTGG 1 cut(s) 263
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 262
PspEI GGTNACC 1 cut(s) 670
PspGI CCWGG 1 cut(s) 262
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 4 cut(s) 161, 506, 590, 621
Sau3AI GATC 3 cut(s) 88, 169, 538
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 264
Sse9I AATT 3 cut(s) 111, 258, 544
SsiI CCGC 1 cut(s) 500
SspMI CTAG 3 cut(s) 240, 555, 697
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 3 cut(s) 58, 139, 452
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 294, 658
TasI AATT 3 cut(s) 111, 258, 544
TfiI GAWTC 5 cut(s) 20, 65, 146, 518, 560
Tru1I TTAA 4 cut(s) 161, 506, 590, 621
Tru9I TTAA 4 cut(s) 161, 506, 590, 621
TscAI CASTG 4 cut(s) 63, 144, 238, 682
TseFI GTSAC 2 cut(s) 670, 677
Tsp45I GTSAC 2 cut(s) 670, 677
TspDTI ATGAA 5 cut(s) 57, 63, 159, 219, 474
TspRI CASTG 4 cut(s) 63, 144, 238, 682
Van91I CCANNNNNTGG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 2 cut(s) 114, 258
XspI CTAG 3 cut(s) 240, 555, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.