Rh4DG152500

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000252
Physical Location & Seq
Forward (+)
30384798 .. 30392416
7619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG152500.1

Sequence Viewer

Length: 498 bp
ATGGCAATTCGACTGCCAAGCCTGAAGCACAAAGAAATGATAAGATGTAATTTGTTTTATGAGGTAGCAGACTTAGCAGATGACAAAGAAGAAGATTGTAACATGGTGATGGGGATATTAAATGATCTGAAAATGAAGCTGACTCAAAGTAAAGTTGATTGCGAAAGGAAAGGAGATAATATTGAGTTGGTTGAGAAGACAAAGCTTGATGGAAAACTTTTCGAGAATGGTTGTGAAATACTTGATCCATTATATGTTCGAAGTAAAGGTCGTCCTCCAGTCAACCGAAAACAATCTACGACCGAGCAAATTATTCAAAAAAGAAAAGAAACTGAAGCTGCAAAAATATCTAATGACAAAAATAAATTCCAAGATTCAGAAATAATGAAAAGCACTAATGAGATTTTGGGACGCAAGAAAGCATTGTGCTTCAGACTCGGTACTGTGCGCAAAATTGAAAAGCTTGACCATGGTGGTTTCCGATTCTTCTTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

165

Amino Acids

19.1

Weight (kDa)

9.04

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 449
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 3 cut(s) 44, 354, 415
AfaI GTAC 1 cut(s) 442
AgsI TTSAA 2 cut(s) 317, 458
AluBI AGCT 4 cut(s) 139, 205, 338, 463
AluI AGCT 4 cut(s) 139, 205, 338, 463
AlwI GGATC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 365
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AspLEI GCGC 1 cut(s) 450
AsuHPI GGTGA 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 325
BccI CCATC 2 cut(s) 103, 203
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 261
Bpu14I TTCGAA 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 423
Bsp119I TTCGAA 1 cut(s) 259
Bsp143I GATC 2 cut(s) 124, 244
Bsp19I CCATGG 1 cut(s) 469
BspPI GGATC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 259
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 469
BssMI GATC 2 cut(s) 124, 244
BssT1I CCWWGG 1 cut(s) 469
Bst4CI ACNGT 1 cut(s) 445
BstBI TTCGAA 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 73
BstDSI CCRYGG 1 cut(s) 469
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 2 cut(s) 127, 247
BstMBI GATC 2 cut(s) 124, 244
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 469
CfoI GCGC 1 cut(s) 450
CseI GACGC 1 cut(s) 420
Csp6I GTAC 1 cut(s) 441
CviAII CATG 2 cut(s) 103, 470
CviJI RGCY 5 cut(s) 21, 139, 205, 338, 463
CviKI_1 RGCY 5 cut(s) 21, 139, 205, 338, 463
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 1 cut(s) 73
DpnI GATC 2 cut(s) 126, 246
DpnII GATC 2 cut(s) 124, 244
Eco130I CCWWGG 1 cut(s) 469
Eco57I CTGAAG 3 cut(s) 44, 354, 415
EcoT14I CCWWGG 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 2 cut(s) 106, 473
FaiI YATR 5 cut(s) 60, 104, 253, 255, 471
FaqI GGGAC 1 cut(s) 423
FatI CATG 2 cut(s) 102, 469
Fnu4HI GCNGC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 339
FspI TGCGCA 1 cut(s) 449
GlaI GCGC 1 cut(s) 449
GluI GCNGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 261
HgaI GACGC 1 cut(s) 420
HhaI GCGC 1 cut(s) 450
Hin1II CATG 2 cut(s) 106, 473
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 2 cut(s) 203, 461
HinfI GANTC 4 cut(s) 142, 374, 435, 483
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 5 cut(s) 129, 379, 434, 482, 497
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4V TGCA 1 cut(s) 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 2 cut(s) 106, 473
HspAI GCGC 1 cut(s) 448
Kzo9I GATC 2 cut(s) 124, 244
LpnPI CCDG 2 cut(s) 35, 291
Lsp1109I GCAGC 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 98
MalI GATC 2 cut(s) 126, 246
MboI GATC 2 cut(s) 124, 244
MboII GAAGA 4 cut(s) 101, 104, 208, 478
MluCI AATT 5 cut(s) 6, 49, 309, 365, 453
MlyI GAGTC 2 cut(s) 136, 429
MnlI CCTC 2 cut(s) 55, 285
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 74
NcoI CCATGG 1 cut(s) 469
NdeII GATC 2 cut(s) 124, 244
NlaIII CATG 2 cut(s) 106, 473
NsbI TGCGCA 1 cut(s) 449
NspV TTCGAA 1 cut(s) 259
PfeI GAWTC 2 cut(s) 374, 483
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 2 cut(s) 136, 429
PpsI GAGTC 2 cut(s) 136, 429
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 2 cut(s) 124, 244
SchI GAGTC 2 cut(s) 136, 429
SetI ASST 6 cut(s) 66, 141, 207, 271, 340, 465
SfuI TTCGAA 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 5 cut(s) 6, 49, 309, 365, 453
SspI AATATT 1 cut(s) 181
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 1 cut(s) 445
TaqI TCGA 3 cut(s) 10, 222, 259
TaqII GACCGA 1 cut(s) 317
TasI AATT 5 cut(s) 6, 49, 309, 365, 453
TfiI GAWTC 2 cut(s) 374, 483
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 149, 401
XapI RAATTY 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.