FvH4_3g17011

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000252
Physical Location & Seq
Forward (+)
10743665 .. 10745031
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17011.t1

Sequence Viewer

Length: 1191 bp
ATGTCTACCACACAGCGAAGTGAAAGTATGAATTCATTTTTTGATGGCCATGTCAATTCCAAGACTATCTTGAAGCAATTTGTTGAGCAATATGAAAATGCATTGAGAAGCAAGGTGGAAAAAGAAAACTATGAAGATTTCAAGTGTTTCTCGTACAGTCTTCCCGGTGCAACTCATTACAATATGGAAAAACAAGCACAAGACATTTACACAACTTCGAAGTTCAAAGAGTTTCGAGATGAATTGACAGGTAAAATGTATTGTGACTTTATTTCTGTTGAAGTGGATAATTCAATTTCACAATACATAATTTCTGAAGATATCAAGATTGGGGAGATGAACAAAGTTGTTCACTTTCAGGTTTCATTCAATGATGAGAATGATGAAGTTAACTGCAATTGTTGCCTCTTTCAGTTTAGAGGTATATTGTGCAGACATGCAATATATGTTTTAATTCGTCATAAGAAAAACATGATTCCAGATAAATGTATCATGAGAAGGTGGAGGAAGGATGTGAAAAGATGTCACACAAGGGTTCAAATTAGTTATGGCGGATGGGATGCTAGGCCTGAGTCACGAAGGCTTGACATGATGCAGAAGAATTTTGACGACATTAAGGACTCAGCATATGATTATGAAGATAAGTGCATGATTGTTATGACTTGGTTGAATAACCTAAAGGAAGAACTGTCCAAACATGAGTCCAAGAACTCTGGTGCTTGTGGTGGTGCTGAACCAGTACCAAGTTCACCTGTCAACAGAAACGTGAGTGACGCTGATGGAATTTCAAATCCAAGTCAACATATACTTACTCCATTGGTAAATAAGAGAAAGGGTCGCCCACCATCTAAAAGGAAGATGTCTAAGGTCGAGGAAGAAGTAAGAAAGAAGCGAAAAAGAGAACAAAAGAAAAAATGTGGCGAGACTGGTACTAATGAAGAACTAGGAGCAAAGGCATGCAACTTAATTGGGTCAAGAACAAGAGGTCGCCCGCCATTGAAAAAAAATGATTCTCAGGAAGAACAACCGCAAGGGGTCAAAAACAAAAAACAAAATCGGAGAAATAAGGTATCATCCAATAAAAATTCTGATCATGAAGGAGAAGGATTGAAGGATTTTCCACCCTCACAAAATGATGTCAACCCAAAAAGAGTGCGTGTACCATCCAGAAGATTGTTGGAAACAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

397

Amino Acids

45.91

Weight (kDa)

9.26

Isoelectric Point (pI)

61.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 119 - 154 5e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 3 cut(s) 552, 992, 1028
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 4 cut(s) 31, 601, 783, 1084
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 4 cut(s) 155, 741, 931, 1161
Alw26I GTCTC 1 cut(s) 917
AoxI GGCC 2 cut(s) 46, 566
ApoI RAATTY 4 cut(s) 31, 601, 783, 1084
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 741
AsuII TTCGAA 1 cut(s) 218
BalI TGGCCA 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 152
BccI CCATC 5 cut(s) 38, 549, 773, 853, 1171
BclI TGATCA 1 cut(s) 1090
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 917
BfaI CTAG 2 cut(s) 564, 944
Bme1390I CCNGG 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 550, 582
BpiI GAAGAC 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 737, 931
BseGI GGATG 5 cut(s) 517, 560, 565, 1073, 1163
BseMII CTCAG 3 cut(s) 561, 636, 1028
BseNI ACTGG 2 cut(s) 737, 931
BsgI GTGCAG 1 cut(s) 451
BshFI GGCC 2 cut(s) 48, 568
BsiSI CCGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 917
BsnI GGCC 2 cut(s) 48, 568
Bsp119I TTCGAA 1 cut(s) 218
Bsp143I GATC 1 cut(s) 1090
BspACI CCGC 3 cut(s) 552, 992, 1028
BspANI GGCC 2 cut(s) 48, 568
BspCNI CTCAG 3 cut(s) 562, 635, 1027
BspHI TCATGA 2 cut(s) 492, 1093
BspT104I TTCGAA 1 cut(s) 218
BsrI ACTGG 2 cut(s) 737, 931
BssMI GATC 1 cut(s) 1090
Bst4CI ACNGT 2 cut(s) 158, 690
BstAPI GCANNNNNTGC 1 cut(s) 402
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 958, 992
BstDEI CTNAG 4 cut(s) 570, 622, 864, 1014
BstF5I GGATG 5 cut(s) 517, 560, 565, 1073, 1163
BstKTI GATC 1 cut(s) 1093
BstMAI GTCTC 1 cut(s) 917
BstMBI GATC 1 cut(s) 1090
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNSI RCATGY 2 cut(s) 440, 960
BstSCI CCNGG 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 152
BsuRI GGCC 2 cut(s) 48, 568
BtsCI GGATG 5 cut(s) 517, 560, 565, 1073, 1163
Cac8I GCNNGC 2 cut(s) 958, 992
CciI TCATGA 2 cut(s) 492, 1093
CseI GACGC 1 cut(s) 782
Csp6I GTAC 4 cut(s) 154, 740, 930, 1160
CviAII CATG 9 cut(s) 50, 437, 472, 493, 589, 649, 698, 957, 1094
CviJI RGCY 3 cut(s) 48, 568, 583
CviKI_1 RGCY 3 cut(s) 48, 568, 583
CviQI GTAC 4 cut(s) 154, 740, 930, 1160
DdeI CTNAG 4 cut(s) 570, 622, 864, 1014
DpnI GATC 1 cut(s) 1092
DpnII GATC 1 cut(s) 1090
EaeI YGGCCR 1 cut(s) 46
EciI GGCGGA 1 cut(s) 567
Eco147I AGGCCT 1 cut(s) 568
Eco32I GATATC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 336
EcoRI GAATTC 1 cut(s) 31
EcoRV GATATC 1 cut(s) 322
EcoT22I ATGCAT 1 cut(s) 103
FaeI CATG 9 cut(s) 53, 440, 475, 496, 592, 652, 701, 960, 1097
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 9 cut(s) 49, 436, 471, 492, 588, 648, 697, 956, 1093
FauI CCCGC 1 cut(s) 999
FauNDI CATATG 1 cut(s) 628
FbaI TGATCA 1 cut(s) 1090
FblI GTMKAC 1 cut(s) 5
FokI GGATG 5 cut(s) 524, 567, 572, 1060, 1150
FspBI CTAG 2 cut(s) 564, 944
HaeIII GGCC 2 cut(s) 48, 568
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 782
Hin1II CATG 9 cut(s) 53, 440, 475, 496, 592, 652, 701, 960, 1097
HincII GTYRAC 4 cut(s) 391, 757, 800, 1141
HindII GTYRAC 4 cut(s) 391, 757, 800, 1141
HinfI GANTC 5 cut(s) 475, 572, 620, 701, 1010
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 741
Hpy166II GTNNAC 8 cut(s) 6, 352, 391, 749, 757, 800, 1141, 1160
Hpy188I TCNGA 3 cut(s) 316, 1059, 1090
Hpy8I GTNNAC 8 cut(s) 6, 352, 391, 749, 757, 800, 1141, 1160
HpyAV CCTTC 6 cut(s) 492, 502, 573, 1091, 1097, 1105
HpyCH4III ACNGT 2 cut(s) 158, 690
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 8 cut(s) 101, 170, 396, 432, 440, 595, 648, 960
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 4 cut(s) 570, 622, 864, 1014
HpySE526I ACGT 1 cut(s) 765
Hsp92II CATG 9 cut(s) 53, 440, 475, 496, 592, 652, 701, 960, 1097
Ksp22I TGATCA 1 cut(s) 1090
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 1 cut(s) 1090
LmnI GCTCC 1 cut(s) 947
LweI GCATC 2 cut(s) 550, 582
MaeI CTAG 2 cut(s) 564, 944
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 4 cut(s) 263, 524, 573, 770
MalI GATC 1 cut(s) 1092
MboI GATC 1 cut(s) 1090
MfeI CAATTG 1 cut(s) 397
MlsI TGGCCA 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 3 cut(s) 581, 614, 710
MmeI TCCRAC 1 cut(s) 1158
MnlI CCTC 6 cut(s) 413, 416, 498, 865, 977, 1135
Mox20I TGGCCA 1 cut(s) 48
Mph1103I ATGCAT 1 cut(s) 103
MscI TGGCCA 1 cut(s) 48
MseI TTAA 4 cut(s) 390, 452, 615, 965
Msp20I TGGCCA 1 cut(s) 48
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 165
MunI CAATTG 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 402
NciI CCSGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 628
NdeII GATC 1 cut(s) 1090
NlaIII CATG 9 cut(s) 53, 440, 475, 496, 592, 652, 701, 960, 1097
NmuCI GTSAC 4 cut(s) 263, 524, 573, 770
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 2 cut(s) 440, 960
NspV TTCGAA 1 cut(s) 218
PaeI GCATGC 1 cut(s) 960
PagI TCATGA 2 cut(s) 492, 1093
PceI AGGCCT 1 cut(s) 568
PfeI GAWTC 2 cut(s) 475, 1010
PleI GAGTC 3 cut(s) 580, 614, 709
PpsI GAGTC 3 cut(s) 580, 614, 709
RsaI GTAC 4 cut(s) 155, 741, 931, 1161
RsaNI GTAC 4 cut(s) 154, 740, 930, 1160
SaqAI TTAA 4 cut(s) 390, 452, 615, 965
Sau3AI GATC 1 cut(s) 1090
SchI GAGTC 3 cut(s) 581, 614, 710
ScrFI CCNGG 1 cut(s) 165
SfaNI GCATC 2 cut(s) 550, 582
SfuI TTCGAA 1 cut(s) 218
SphI GCATGC 1 cut(s) 960
SseBI AGGCCT 1 cut(s) 568
SsiI CCGC 3 cut(s) 552, 992, 1028
SspMI CTAG 2 cut(s) 564, 944
StuI AGGCCT 1 cut(s) 568
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 158, 690
TaiI ACGT 1 cut(s) 768
TaqI TCGA 3 cut(s) 218, 235, 870
TfiI GAWTC 2 cut(s) 475, 1010
Tru1I TTAA 4 cut(s) 390, 452, 615, 965
Tru9I TTAA 4 cut(s) 390, 452, 615, 965
TseFI GTSAC 4 cut(s) 263, 524, 573, 770
Tsp45I GTSAC 4 cut(s) 263, 524, 573, 770
XapI RAATTY 4 cut(s) 31, 601, 783, 1084
XceI RCATGY 2 cut(s) 440, 960
XcmI CCANNNNNNNNNTGG 1 cut(s) 1174
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 564, 944
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.