pycom12g03510

plant mutator transposase zinc finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
3419715 .. 3424244
4530 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g03510.2

Sequence Viewer

Length: 567 bp
ATGCAGAAAACCTTTGATGACATTAAGGAATTAGCCAATGATTCTGATGATAAGTGTATGTTTGTGGTGAGATGGATGCATAAACTAAAGAAGCAAATATGTAAACATGACGGAGCAGCTAGTAGCACTCAACTAACACCACAGTCACCTGATGATACGAACTCTGATCAAAGTGATGCAATATGCCATATTGATGGTCCACCTCCTTGTAGAAGTGATAACATAGTTGCAACACAAGAAAGTAATGTCGTTGTGGAGGAAAACATGGCTTTGTTATTGGGACTCAGTCAAGGTAGTCATCCAAACCCATTGTACAAAGAGTCTAAGATTGGAAATATAAGTTATCCTACTATTCATGGAAATTATGTCCAGATCCTCCTCACAACGTTTTCAAAGTTCAAACCAATTCACAACTACATAAAAAAAAAACTTCATATCAATCTTCAACTCTCACCTTTAATCAAACACTTTGTTGATCAACCAAAAGGATCCTTTGTCAGTTCTCAATCTTCGTCAGGTTTCTCGTTTCGGTTTTGGATTTCTCGATCAAATGGACCAAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

189

Amino Acids

21.13

Weight (kDa)

8.64

Isoelectric Point (pI)

61.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 386
AclWI GGATC 3 cut(s) 367, 483, 496
AfaI GTAC 1 cut(s) 314
AgsI TTSAA 3 cut(s) 393, 400, 446
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
AlwI GGATC 3 cut(s) 367, 483, 496
ApeKI GCWGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 197, 554
AsuHPI GGTGA 3 cut(s) 79, 138, 444
AvaII GGWCC 2 cut(s) 197, 554
BamHI GGATCC 1 cut(s) 488
BbvI GCAGC 1 cut(s) 128
BccI CCATC 2 cut(s) 66, 188
BclI TGATCA 2 cut(s) 166, 475
BfaI CTAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme18I GGWCC 2 cut(s) 197, 554
BmgT120I GGNCC 2 cut(s) 197, 554
BmiI GGNNCC 1 cut(s) 490
BmsI GCATC 2 cut(s) 66, 166
BseGI GGATG 2 cut(s) 81, 298
BseMII CTCAG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 128
BslFI GGGAC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 294
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 5 cut(s) 166, 372, 475, 488, 545
BspCNI CTCAG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 490
BspPI GGATC 3 cut(s) 367, 483, 496
BsrGI TGTACA 1 cut(s) 312
BssMI GATC 5 cut(s) 166, 372, 475, 488, 545
Bst4CI ACNGT 1 cut(s) 144
BstAUI TGTACA 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 284, 324
BstF5I GGATG 2 cut(s) 81, 298
BstKTI GATC 5 cut(s) 169, 375, 478, 491, 548
BstMBI GATC 5 cut(s) 166, 372, 475, 488, 545
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 2 cut(s) 372, 488
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 2 cut(s) 372, 488
BtsCI GGATG 2 cut(s) 81, 298
Cfr13I GGNCC 2 cut(s) 197, 554
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 107, 265, 356
CviJI RGCY 3 cut(s) 35, 119, 269
CviKI_1 RGCY 3 cut(s) 35, 119, 269
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 2 cut(s) 284, 324
DpnI GATC 5 cut(s) 168, 374, 477, 490, 547
DpnII GATC 5 cut(s) 166, 372, 475, 488, 545
Eco47I GGWCC 2 cut(s) 197, 554
EcoT22I ATGCAT 1 cut(s) 81
FaeI CATG 3 cut(s) 110, 268, 359
FaqI GGGAC 1 cut(s) 294
FatI CATG 3 cut(s) 106, 264, 355
FbaI TGATCA 2 cut(s) 166, 475
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 88, 285
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 117
Hin1II CATG 3 cut(s) 110, 268, 359
HinfI GANTC 3 cut(s) 41, 282, 320
HphI GGTGA 3 cut(s) 79, 138, 444
Hpy166II GTNNAC 2 cut(s) 104, 200
Hpy188I TCNGA 2 cut(s) 46, 166
Hpy188III TCNNGA 2 cut(s) 370, 543
Hpy8I GTNNAC 2 cut(s) 104, 200
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 4 cut(s) 4, 79, 179, 230
HpyF3I CTNAG 2 cut(s) 284, 324
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 3 cut(s) 110, 268, 359
Ksp22I TGATCA 2 cut(s) 166, 475
Kzo9I GATC 5 cut(s) 166, 372, 475, 488, 545
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 3 cut(s) 162, 383, 501
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 2 cut(s) 66, 166
MaeI CTAG 1 cut(s) 120
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 144
MalI GATC 5 cut(s) 168, 374, 477, 490, 547
MboI GATC 5 cut(s) 166, 372, 475, 488, 545
MboII GAAGA 2 cut(s) 434, 501
MflI RGATCY 2 cut(s) 372, 488
MluCI AATT 4 cut(s) 29, 361, 405, 562
MlyI GAGTC 2 cut(s) 276, 329
MnlI CCTC 4 cut(s) 213, 250, 386, 389
Mph1103I ATGCAT 1 cut(s) 81
MseI TTAA 2 cut(s) 24, 458
MslI CAYNNNNRTG 1 cut(s) 192
NdeII GATC 5 cut(s) 166, 372, 475, 488, 545
NlaIII CATG 3 cut(s) 110, 268, 359
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 81
PfeI GAWTC 1 cut(s) 41
PflFI GACNNNGTC 1 cut(s) 285
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 2 cut(s) 276, 328
PpsI GAGTC 2 cut(s) 276, 328
Psp1406I AACGTT 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 2 cut(s) 197, 554
PsuI RGATCY 2 cut(s) 372, 488
PsyI GACNNNGTC 1 cut(s) 285
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 2 cut(s) 24, 458
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 5 cut(s) 166, 372, 475, 488, 545
Sau96I GGNCC 2 cut(s) 197, 554
SchI GAGTC 2 cut(s) 276, 329
SetI ASST 8 cut(s) 14, 121, 151, 205, 295, 389, 457, 520
SfaNI GCATC 2 cut(s) 66, 166
SinI GGWCC 2 cut(s) 197, 554
SmiMI CAYNNNNRTG 1 cut(s) 192
Sse9I AATT 4 cut(s) 29, 361, 405, 562
SspMI CTAG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 1 cut(s) 389
TaqI TCGA 1 cut(s) 544
TasI AATT 4 cut(s) 29, 361, 405, 562
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 24, 458
Tru9I TTAA 2 cut(s) 24, 458
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 344, 422
TspGWI ACGGA 1 cut(s) 126
Tth111I GACNNNGTC 1 cut(s) 285
VpaK11BI GGWCC 2 cut(s) 197, 554
XspI CTAG 1 cut(s) 120
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.