Rw4G013030

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000252
Physical Location & Seq
Forward (+)
30546023 .. 30547408
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G013030.1

Sequence Viewer

Length: 1386 bp
ATGGATACTGTATATATGGAAGAAAATATGGAATGTGGGGATGAAGTGGAAACTGAGAGAAGTAATGTAGAAAATATGGAATGTGGGGATGAAGTGGAAACAGAGATTGGACTAGTGTTTGACTCAATTGATGAGCTAGAGAAGTATTATAAATCCTATGGAAAAGGAATAGGGTTTGAAGTTTGTGAAAGGACATCAAGCAAAGGAGATGATGGGGAATTGAAGTACATAACATTCACATGTTCACGTTTTGGCAAGCGTAGTAGCAAGTCAAGACATGCATTTAAATTGCGACCAGTTGCAAAATCAGATTGCAGGGCTAAATTCAATGTAAATTTACTCCCTGATGGAAAAAGGTTAGTGTCCTCCATTGTGCTTGAACATAATCATGATCTTAGTACTCCAAGCAAAAGACGGTTTTATAAAAGCTCAAGAGAATTACCGCCACATGTTAAAAAGAGGTTAGCAACAAATGATATAGCTGGAATAAGAACAAAAAAGAATTTCAATTCCTTTGTGGTTGAAGCCGGTGGACATGAGAATATAACATTCCTAGAGAAAGATGTGAGAAATTTTCTTGATAAGGTAAGGCGTCTGCGACTAAGGGAGGGAGATGCTACTGCTATTCAAAAGTATTTTCTGAAAATGCAAGCTGACAACTCCAATTTCTCTTATTTAATGGATATAAATGAGGAGGGTCGACTAAGGAATGTGTTTTTGGCAAATGCAAGAAGCAGAGCTGCTTACGAGGAATTTGGTGATGCTGTGACATTTGACACCACATACTTAACAAATAAGTATGACATGCCATTTGCATCTTTTGTAGGTGTCAATCATCATGGGCAATCAATATTACTAGGATGTGGATTGATTTCCCATGAGGATACAGATACGTTTACATGGTTATTCCAGTCCTGGCTTACATGTATGTCTAATCATGCTCCTAATGCAATCATTATAGATCAAGATAAAGCAATGCAAAGAGCAATTGAGATTATCTTTCGTAATACACGACATAGGTGGTGCTTATGGCATATAATGAAGAACGTTCCAGAAAAATTGAAAGGCTACAAAGAGAAATACGAGTCTATCAAGTTTTCTTTTCAAAATATTATTTACGATTCACTAAGTGGTGATGAATTTGAAGATCGTTGGAAGCTATTCATTGAAAAGTATAACCTACAGAATAATGAATGGTTACTGGGATTATATGAGGAGAGGCGAAGATGGGTACCTAGTTTTGTGAAAGACACTTTCTGGGCAGGCATGTCTACAACTCAGCGTAGTGAGAGCATGAATGCATTCTTTGATGGGTATGTAAACTCAAAGACTACATTAAAGCGGTTTGTGGAACAATATGAGAATGCTTTACGAGATAAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

461

Amino Acids

53.89

Weight (kDa)

6.85

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 48 - 133 1.4e-14 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 220 - 337 3.8e-08 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 256 - 349 1.3e-34 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 150, 423
Acc65I GGTACC 1 cut(s) 1231
AccB1I GGYRCC 1 cut(s) 1231
AccI GTMKAC 2 cut(s) 700, 1271
AciI CCGC 2 cut(s) 443, 1342
AclI AACGTT 1 cut(s) 1047
AcsI RAATTY 6 cut(s) 323, 334, 502, 571, 752, 1139
AcyI GRCGYC 1 cut(s) 592
AdeI CACNNNGTG 1 cut(s) 1130
AfaI GTAC 3 cut(s) 227, 400, 1233
AflIII ACRYGT 3 cut(s) 239, 448, 923
AhlI ACTAGT 1 cut(s) 112
AjnI CCWGG 1 cut(s) 914
AjuI GAANNNNNNNTTGG 4 cut(s) 90, 122, 701, 733
AluBI AGCT 6 cut(s) 136, 429, 482, 653, 740, 1159
AluI AGCT 6 cut(s) 136, 429, 482, 653, 740, 1159
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 6 cut(s) 323, 334, 502, 571, 752, 1139
ArsI GACNNNNNNTTYG 2 cut(s) 794, 826
Asp700I GAANNNNTTC 2 cut(s) 1160, 1301
Asp718I GGTACC 1 cut(s) 1231
AsuHPI GGTGA 2 cut(s) 770, 1145
BanI GGYRCC 1 cut(s) 1231
BbvI GCAGC 1 cut(s) 727
BccI CCATC 4 cut(s) 206, 341, 1221, 1304
BciT130I CCWGG 1 cut(s) 916
BciVI GTATCC 1 cut(s) 877
BcuI ACTAGT 1 cut(s) 112
BfaI CTAG 5 cut(s) 113, 137, 554, 857, 1236
BfmI CTRYAG 1 cut(s) 1181
BfuI GTATCC 1 cut(s) 877
BisI GCNGC 1 cut(s) 741
BlsI GCNGC 1 cut(s) 742
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 916
BmiI GGNNCC 1 cut(s) 1233
BmrFI CCNGG 1 cut(s) 916
BmrI ACTGGG 1 cut(s) 1211
BmsI GCATC 3 cut(s) 604, 751, 824
BmuI ACTGGG 1 cut(s) 1211
BpuEI CTTGAG 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 592
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 3 cut(s) 296, 910, 1206
Bse3DI GCAATG 1 cut(s) 981
BseBI CCWGG 1 cut(s) 916
BseGI GGATG 3 cut(s) 46, 94, 866
BseMI GCAATG 1 cut(s) 981
BseMII CTCAG 2 cut(s) 45, 1292
BseNI ACTGG 3 cut(s) 296, 910, 1206
BseRI GAGGAG 2 cut(s) 707, 1229
BseXI GCAGC 1 cut(s) 727
BshNI GGYRCC 1 cut(s) 1231
BsiSI CCGG 1 cut(s) 528
BsmI GAATGC 3 cut(s) 1301, 1303, 1369
Bsp143I GATC 3 cut(s) 391, 961, 1147
BspACI CCGC 2 cut(s) 443, 1342
BspCNI CTCAG 2 cut(s) 46, 1291
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 1233
BspT107I GGYRCC 1 cut(s) 1231
BsrDI GCAATG 1 cut(s) 981
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 3 cut(s) 296, 910, 1206
BssAI RCCGGY 1 cut(s) 527
BssMI GATC 3 cut(s) 391, 961, 1147
BssNI GRCGYC 1 cut(s) 592
Bst2UI CCWGG 1 cut(s) 916
Bst4CI ACNGT 2 cut(s) 10, 417
BstACI GRCGYC 1 cut(s) 592
BstC8I GCNNGC 3 cut(s) 257, 651, 1264
BstDEI CTNAG 6 cut(s) 54, 395, 602, 704, 1127, 1278
BstF5I GGATG 3 cut(s) 46, 94, 866
BstKTI GATC 3 cut(s) 394, 964, 1150
BstMBI GATC 3 cut(s) 391, 961, 1147
BstMWI GCNNNNNNNGC 1 cut(s) 947
BstNI CCWGG 1 cut(s) 916
BstNSI RCATGY 6 cut(s) 243, 281, 452, 808, 927, 1270
BstSCI CCNGG 1 cut(s) 914
BstSFI CTRYAG 1 cut(s) 1181
BstV1I GCAGC 1 cut(s) 727
BsuI GTATCC 1 cut(s) 877
BtsCI GGATG 3 cut(s) 46, 94, 866
Cac8I GCNNGC 3 cut(s) 257, 651, 1264
CciI TCATGA 1 cut(s) 388
Cfr10I RCCGGY 1 cut(s) 527
CseI GACGC 1 cut(s) 581
Csp6I GTAC 3 cut(s) 226, 399, 1232
CviQI GTAC 3 cut(s) 226, 399, 1232
DdeI CTNAG 6 cut(s) 54, 395, 602, 704, 1127, 1278
DpnI GATC 3 cut(s) 393, 963, 1149
DpnII GATC 3 cut(s) 391, 961, 1147
DraI TTTAAA 1 cut(s) 286
DraIII CACNNNGTG 1 cut(s) 1130
EcoRII CCWGG 1 cut(s) 914
EcoT22I ATGCAT 2 cut(s) 283, 1303
FblI GTMKAC 2 cut(s) 700, 1271
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 3 cut(s) 53, 101, 873
Fsp4HI GCNGC 1 cut(s) 741
FspBI CTAG 5 cut(s) 113, 137, 554, 857, 1236
GluI GCNGC 1 cut(s) 741
HapII CCGG 1 cut(s) 528
HgaI GACGC 1 cut(s) 581
Hin1I GRCGYC 1 cut(s) 592
HincII GTYRAC 1 cut(s) 701
HindII GTYRAC 1 cut(s) 701
HinfI GANTC 3 cut(s) 122, 1085, 1121
HpaII CCGG 1 cut(s) 528
HphI GGTGA 2 cut(s) 770, 1145
Hpy166II GTNNAC 6 cut(s) 245, 533, 701, 897, 1272, 1321
Hpy188I TCNGA 2 cut(s) 310, 642
Hpy188III TCNNGA 6 cut(s) 273, 389, 432, 578, 965, 1052
Hpy8I GTNNAC 6 cut(s) 245, 533, 701, 897, 1272, 1321
HpyCH4III ACNGT 2 cut(s) 10, 417
HpyCH4IV ACGT 3 cut(s) 247, 893, 1047
HpyCH4V TGCA 9 cut(s) 281, 302, 315, 649, 728, 815, 950, 979, 1301
HpyF10VI GCNNNNNNNGC 1 cut(s) 947
HpyF3I CTNAG 6 cut(s) 54, 395, 602, 704, 1127, 1278
HpySE526I ACGT 3 cut(s) 247, 893, 1047
Hsp92I GRCGYC 1 cut(s) 592
KpnI GGTACC 1 cut(s) 1235
Kzo9I GATC 3 cut(s) 391, 961, 1147
LmnI GCTCC 1 cut(s) 946
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 3 cut(s) 604, 751, 824
MaeI CTAG 5 cut(s) 113, 137, 554, 857, 1236
MaeII ACGT 3 cut(s) 247, 893, 1047
MaeIII GTNAC 2 cut(s) 766, 1197
MalI GATC 3 cut(s) 393, 963, 1149
MboI GATC 3 cut(s) 391, 961, 1147
MboII GAAGA 4 cut(s) 32, 1054, 1157, 1236
MfeI CAATTG 2 cut(s) 126, 987
MlyI GAGTC 2 cut(s) 116, 1094
MmeI TCCRAC 1 cut(s) 1133
MnlI CCTC 9 cut(s) 376, 453, 601, 685, 688, 742, 874, 1207, 1212
Mph1103I ATGCAT 2 cut(s) 283, 1303
MroXI GAANNNNTTC 2 cut(s) 1160, 1301
MseI TTAA 5 cut(s) 285, 453, 677, 788, 1337
MslI CAYNNNNRTG 2 cut(s) 238, 387
MspI CCGG 1 cut(s) 528
MspR9I CCNGG 1 cut(s) 916
MunI CAATTG 2 cut(s) 126, 987
Mva1269I GAATGC 3 cut(s) 1301, 1303, 1369
MvaI CCWGG 1 cut(s) 916
MwoI GCNNNNNNNGC 1 cut(s) 947
NdeII GATC 3 cut(s) 391, 961, 1147
NlaIV GGNNCC 1 cut(s) 1233
NmuCI GTSAC 1 cut(s) 766
NsiI ATGCAT 2 cut(s) 283, 1303
NspI RCATGY 6 cut(s) 243, 281, 452, 808, 927, 1270
PagI TCATGA 1 cut(s) 388
PciI ACATGT 3 cut(s) 239, 448, 923
PcsI WCGNNNNNNNCGW 1 cut(s) 1009
PctI GAATGC 3 cut(s) 1301, 1303, 1369
PdmI GAANNNNTTC 2 cut(s) 1160, 1301
PfeI GAWTC 1 cut(s) 1121
PkrI GCNGC 1 cut(s) 742
PleI GAGTC 2 cut(s) 116, 1093
PpsI GAGTC 2 cut(s) 116, 1093
PscI ACATGT 3 cut(s) 239, 448, 923
PsiI TTATAA 2 cut(s) 150, 423
Psp1406I AACGTT 1 cut(s) 1047
Psp6I CCWGG 1 cut(s) 914
PspGI CCWGG 1 cut(s) 914
PspN4I GGNNCC 1 cut(s) 1233
RsaI GTAC 3 cut(s) 227, 400, 1233
RsaNI GTAC 3 cut(s) 226, 399, 1232
RseI CAYNNNNRTG 2 cut(s) 238, 387
SalI GTCGAC 1 cut(s) 699
SaqAI TTAA 5 cut(s) 285, 453, 677, 788, 1337
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 3 cut(s) 391, 961, 1147
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 2 cut(s) 116, 1094
ScrFI CCNGG 1 cut(s) 916
SfaNI GCATC 3 cut(s) 604, 751, 824
SfcI CTRYAG 1 cut(s) 1181
SmiI ATTTAAAT 1 cut(s) 286
SmiMI CAYNNNNRTG 2 cut(s) 238, 387
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
SpeI ACTAGT 1 cut(s) 112
SsiI CCGC 2 cut(s) 443, 1342
SspI AATATT 2 cut(s) 852, 1111
SspMI CTAG 5 cut(s) 113, 137, 554, 857, 1236
StyD4I CCNGG 1 cut(s) 914
SwaI ATTTAAAT 1 cut(s) 286
TaaI ACNGT 2 cut(s) 10, 417
TaiI ACGT 3 cut(s) 250, 896, 1050
TaqI TCGA 1 cut(s) 700
TatI WGTACW 2 cut(s) 225, 398
TfiI GAWTC 1 cut(s) 1121
Tru1I TTAA 5 cut(s) 285, 453, 677, 788, 1337
Tru9I TTAA 5 cut(s) 285, 453, 677, 788, 1337
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 7 cut(s) 57, 105, 1055, 1152, 1153, 1206, 1310
XapI RAATTY 6 cut(s) 323, 334, 502, 571, 752, 1139
XceI RCATGY 6 cut(s) 243, 281, 452, 808, 927, 1270
XmiI GTMKAC 2 cut(s) 700, 1271
XmnI GAANNNNTTC 2 cut(s) 1160, 1301
XspI CTAG 5 cut(s) 113, 137, 554, 857, 1236
ZrmI AGTACT 1 cut(s) 400
Zsp2I ATGCAT 2 cut(s) 283, 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.