Rroxscaffold_7G00172860

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000252
Physical Location & Seq
Forward (+)
12991424 .. 13001061
9638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172860.1

Sequence Viewer

Length: 942 bp
ATGGAGACAACAGATTACACAGATGTATTCATACCGTTTGAGTCTGCACGTTTGCTCCACAGGCCCTGCATTGATTTGGAACCAAACTGTGCATTCAATGGTGATAAGGATAATCTTGTCTCGATCATGATATCGATTGTGCGGGAGGAGCAATACATTATAGCAGCCCACAAATCCTGTCACTCTCTCAAGGTGTGCCAAGGGTTGCACAATCTTGCGAGCATTGCTGAATCTGTCCCTCGAATAGAAGGCTGCCGAGAAGAACTCGTCGTCTCTGCCTCACTCTCGGGTCATCCTCTTGCATCAAAAGCATTCGGTAATGGAGAAAAACAGTCTATTGTAGAAGAAATGGAAAGTGTTGAGAATGAAATGGATACTGCATATATGGAAGAAAATATGGAAGGTGGGGATGAAGTGGAAACTGAGAGAAGTAATGTAGAAATTGATATCGAAATTGCTGAGAATGAAACAGTGAAAGAAAGGGAAAGAGATCCAGAGATTGGACTAGTGTTTGACTCAATTGATGAGCTAGAGAAGTATTATAAATCCTATGGAAAAGGTATGGGGTTTGAAGTTTGTAAAAGGACATCAAGCAAAGGAGATGATGGGGAAGTAAAGTACATAACATTCACATGTTCTCGTTTTGACAAGCCTAGTAGCAAGTCAAGACATGCATTTAAATTGCGACCAGTTGCAAAATCAGATTGCAAGGATAAACTCAATGCAAATTTACTCCCGGATGGAAAATGGTTAGTGTCCTCCATTGTGCTTGAACATAATCATGATCTTAGTACTCCAAGCAAAAGACGGTTTTATAAAAGCTCAAGAGAATTACCGCCACATGTTACAATTGATGGACTATTGAGTAGATATCACATTACAAACTCTCTACAACCCCACAATCCTATCAATGGGGATAACATGCAGTCGAAACAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

313

Amino Acids

35.29

Weight (kDa)

5.19

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 179 - 264 1.7e-15 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 543, 816
AccB7I CCANNNNNTGG 1 cut(s) 500
AciI CCGC 2 cut(s) 142, 836
AclWI GGATC 1 cut(s) 485
AcsI RAATTY 1 cut(s) 727
AfaI GTAC 2 cut(s) 620, 793
AfiI CCNNNNNNNGG 2 cut(s) 500, 911
AflIII ACRYGT 2 cut(s) 632, 841
AgsI TTSAA 3 cut(s) 97, 572, 773
AhlI ACTAGT 1 cut(s) 505
AluBI AGCT 2 cut(s) 529, 822
AluI AGCT 2 cut(s) 529, 822
Alw26I GTCTC 2 cut(s) 124, 277
AlwI GGATC 1 cut(s) 485
AlwNI CAGNNNCTG 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 2 cut(s) 164, 252
ApoI RAATTY 1 cut(s) 727
AspS9I GGNCC 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 737
AsuHPI GGTGA 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 286
BbvI GCAGC 2 cut(s) 176, 239
BccI CCATC 3 cut(s) 599, 734, 848
BciVI GTATCC 1 cut(s) 367
BcnI CCSGG 1 cut(s) 737
BcoDI GTCTC 2 cut(s) 124, 277
BcuI ACTAGT 1 cut(s) 505
BfaI CTAG 3 cut(s) 506, 530, 654
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 2 cut(s) 165, 253
BlsI GCNGC 2 cut(s) 166, 254
BmcAI AGTACT 1 cut(s) 793
Bme1390I CCNGG 1 cut(s) 737
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 737
BmsI GCATC 1 cut(s) 311
BplI GAGNNNNNCTC 2 cut(s) 249, 281
BpuEI CTTGAG 2 cut(s) 173, 808
BpuMI CCSGG 1 cut(s) 737
Bsa29I ATCGAT 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 2 cut(s) 500, 911
Bse1I ACTGG 1 cut(s) 689
Bse3DI GCAATG 1 cut(s) 222
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 3 cut(s) 292, 415, 745
BseLI CCNNNNNNNGG 2 cut(s) 500, 911
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 414, 450
BseNI ACTGG 1 cut(s) 689
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 176, 239
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 64
BshVI ATCGAT 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 1 cut(s) 737
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 500, 911
BsmAI GTCTC 2 cut(s) 124, 277
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 2 cut(s) 92, 311
BsnI GGCC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 286
Bsp143I GATC 3 cut(s) 123, 490, 784
BspACI CCGC 2 cut(s) 142, 836
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 415, 451
BspDI ATCGAT 1 cut(s) 134
BspHI TCATGA 2 cut(s) 126, 781
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 689
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 3 cut(s) 123, 490, 784
BssT1I CCWWGG 1 cut(s) 199
Bst4CI ACNGT 5 cut(s) 36, 89, 333, 472, 810
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 423, 459, 788
BstF5I GGATG 3 cut(s) 292, 415, 745
BstKTI GATC 3 cut(s) 126, 493, 787
BstMAI GTCTC 2 cut(s) 124, 277
BstMBI GATC 3 cut(s) 123, 490, 784
BstMWI GCNNNNNNNGC 4 cut(s) 61, 148, 224, 308
BstNSI RCATGY 4 cut(s) 636, 674, 845, 925
BstSCI CCNGG 1 cut(s) 735
BstV1I GCAGC 2 cut(s) 176, 239
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
Bsu15I ATCGAT 1 cut(s) 134
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 1 cut(s) 64
BsuTUI ATCGAT 1 cut(s) 134
BtsCI GGATG 3 cut(s) 292, 415, 745
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 220
CaiI CAGNNNCTG 1 cut(s) 66
CciI TCATGA 2 cut(s) 126, 781
Cfr13I GGNCC 1 cut(s) 63
ClaI ATCGAT 1 cut(s) 134
Csp6I GTAC 2 cut(s) 619, 792
CviAII CATG 6 cut(s) 127, 633, 671, 782, 842, 922
CviJI RGCY 6 cut(s) 64, 167, 252, 529, 652, 822
CviKI_1 RGCY 6 cut(s) 64, 167, 252, 529, 652, 822
CviQI GTAC 2 cut(s) 619, 792
DdeI CTNAG 3 cut(s) 423, 459, 788
DpnI GATC 3 cut(s) 125, 492, 786
DpnII GATC 3 cut(s) 123, 490, 784
DraI TTTAAA 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 199
Eco32I GATATC 3 cut(s) 132, 448, 872
Eco88I CYCGRG 1 cut(s) 286
EcoO109I RGGNCCY 1 cut(s) 63
EcoRV GATATC 3 cut(s) 132, 448, 872
EcoT14I CCWWGG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 6 cut(s) 130, 636, 674, 785, 845, 925
FaqI GGGAC 1 cut(s) 221
FatI CATG 6 cut(s) 126, 632, 670, 781, 841, 921
FauI CCCGC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 165, 253
FokI GGATG 3 cut(s) 279, 422, 752
Fsp4HI GCNGC 2 cut(s) 165, 253
FspBI CTAG 3 cut(s) 506, 530, 654
GluI GCNGC 2 cut(s) 165, 253
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 737
Hin1II CATG 6 cut(s) 130, 636, 674, 785, 845, 925
HinfI GANTC 3 cut(s) 41, 230, 515
HpaII CCGG 1 cut(s) 737
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 703
Hpy188III TCNNGA 6 cut(s) 121, 127, 494, 666, 782, 825
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 242, 395
HpyCH4III ACNGT 5 cut(s) 36, 89, 333, 472, 810
HpyCH4IV ACGT 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 148, 224, 308
HpyF3I CTNAG 3 cut(s) 423, 459, 788
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 6 cut(s) 130, 636, 674, 785, 845, 925
Kzo9I GATC 3 cut(s) 123, 490, 784
LmnI GCTCC 2 cut(s) 60, 148
LpnPI CCDG 6 cut(s) 46, 79, 190, 507, 702, 750
Lsp1109I GCAGC 2 cut(s) 176, 239
LweI GCATC 1 cut(s) 311
MaeI CTAG 3 cut(s) 506, 530, 654
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 179, 844
MalI GATC 3 cut(s) 125, 492, 786
MboI GATC 3 cut(s) 123, 490, 784
MboII GAAGA 3 cut(s) 272, 356, 401
MfeI CAATTG 2 cut(s) 519, 849
MflI RGATCY 1 cut(s) 490
MluCI AATT 7 cut(s) 441, 453, 519, 680, 727, 830, 849
MlyI GAGTC 2 cut(s) 50, 509
MnlI CCTC 5 cut(s) 139, 249, 289, 306, 769
Mph1103I ATGCAT 1 cut(s) 676
MseI TTAA 1 cut(s) 678
MslI CAYNNNNRTG 2 cut(s) 631, 780
MspI CCGG 1 cut(s) 737
MspR9I CCNGG 1 cut(s) 737
MunI CAATTG 2 cut(s) 519, 849
Mva1269I GAATGC 2 cut(s) 92, 311
MwoI GCNNNNNNNGC 4 cut(s) 61, 148, 224, 308
NciI CCSGG 1 cut(s) 737
NdeII GATC 3 cut(s) 123, 490, 784
NlaIII CATG 6 cut(s) 130, 636, 674, 785, 845, 925
NlaIV GGNNCC 1 cut(s) 81
NmeAIII GCCGAG 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 4 cut(s) 636, 674, 845, 925
PagI TCATGA 2 cut(s) 126, 781
PciI ACATGT 2 cut(s) 632, 841
PctI GAATGC 2 cut(s) 92, 311
PfeI GAWTC 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 500
PfoI TCCNGGA 1 cut(s) 735
PkrI GCNGC 2 cut(s) 166, 254
PleI GAGTC 2 cut(s) 49, 509
PpsI GAGTC 2 cut(s) 49, 509
PscI ACATGT 2 cut(s) 632, 841
PsiI TTATAA 2 cut(s) 543, 816
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 2 cut(s) 620, 793
RsaNI GTAC 2 cut(s) 619, 792
RseI CAYNNNNRTG 2 cut(s) 631, 780
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 2 cut(s) 165, 253
Sau3AI GATC 3 cut(s) 123, 490, 784
Sau96I GGNCC 1 cut(s) 63
ScaI AGTACT 1 cut(s) 793
SchI GAGTC 2 cut(s) 50, 509
ScrFI CCNGG 1 cut(s) 737
SetI ASST 6 cut(s) 52, 195, 406, 531, 562, 824
SfaNI GCATC 1 cut(s) 311
SmiI ATTTAAAT 1 cut(s) 679
SmiMI CAYNNNNRTG 2 cut(s) 631, 780
SmlI CTYRAG 2 cut(s) 188, 823
SmoI CTYRAG 2 cut(s) 188, 823
SpeI ACTAGT 1 cut(s) 505
Sse9I AATT 7 cut(s) 441, 453, 519, 680, 727, 830, 849
SsiI CCGC 2 cut(s) 142, 836
SspMI CTAG 3 cut(s) 506, 530, 654
StyD4I CCNGG 1 cut(s) 735
StyI CCWWGG 1 cut(s) 199
SwaI ATTTAAAT 1 cut(s) 679
TaaI ACNGT 5 cut(s) 36, 89, 333, 472, 810
TaiI ACGT 1 cut(s) 52
TaqI TCGA 5 cut(s) 122, 134, 241, 450, 929
TasI AATT 7 cut(s) 441, 453, 519, 680, 727, 830, 849
TatI WGTACW 2 cut(s) 618, 791
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 2 cut(s) 164, 252
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 4 cut(s) 19, 381, 426, 480
TspRI CASTG 1 cut(s) 477
Van91I CCANNNNNTGG 1 cut(s) 500
XapI RAATTY 1 cut(s) 727
XceI RCATGY 4 cut(s) 636, 674, 845, 925
XspI CTAG 3 cut(s) 506, 530, 654
ZrmI AGTACT 1 cut(s) 793
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.