Rh6BG170500

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000252
Physical Location & Seq
Reverse (-)
28176865 .. 28179658
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG170500.1

Sequence Viewer

Length: 654 bp
ATGCTCGAGGAGAGGAGGACTCTTTACATAGTGATTGCCGCCATCGGGCCATATCGACTCTCCGGTGGTGTCATCTCGGGAGTTTGGAAGGAAGGAAACCGACGAGTTTGGTCCGGAACAGTGGATGATTCATCAAAGAGCTTAGAGAATGATCAAGAAAATGAGGTGGAAGAAATAATGCAAGTGCCCAATGTTGAGATGAATTTTGATTCTATTGATGAGGCATATGACTATTATAGAAAATATGGGAAGCAATTAGGATTCCCAGTGAGAAAGAGAACATCAAGAAAGGGTGATGATGGGATCACAAAATATATAACTATTTCATGTGGTCGAGCAGGAAAATTTAAAAGTAAGTCAAGTAACTCTCTAAAGCCGCATCCAAGTGTGAAGACTGATTGCAAGGCACTTATTAGACTTGGTAAATCCCTTGATGGAAAGTGGAAAATCAATTCTACAAAGCTTGAGCATAACCATGGTTTGAGTCCAAGAAAATCTCGTTATTTCCCAGTCAACCGTGAATTAAGTTCATCAATAAAAAGGAGGCTTGAACTAAATGATGTTGCTAGAATAGGGTTAAACAAGAGTTTTAACTCAATTGTTGTTGAAGCTCAAGGATATGAGAATGTACCATTTTTAGAAAATGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

217

Amino Acids

24.62

Weight (kDa)

9.46

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 77 - 162 5.3e-16 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 113
AciI CCGC 2 cut(s) 39, 377
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 2 cut(s) 202, 344
AfaI GTAC 1 cut(s) 630
AfiI CCNNNNNNNGG 1 cut(s) 45
AgsI TTSAA 2 cut(s) 551, 608
AluBI AGCT 3 cut(s) 141, 463, 611
AluI AGCT 3 cut(s) 141, 463, 611
AlwI GGATC 1 cut(s) 311
Ama87I CYCGRG 2 cut(s) 5, 76
Aor13HI TCCGGA 1 cut(s) 113
AoxI GGCC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 202, 344
AspS9I GGNCC 2 cut(s) 47, 111
AsuHPI GGTGA 1 cut(s) 305
AvaI CYCGRG 2 cut(s) 5, 76
AvaII GGWCC 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 398
BccI CCATC 3 cut(s) 50, 293, 428
BclI TGATCA 1 cut(s) 151
BfaI CTAG 1 cut(s) 567
BisI GCNGC 2 cut(s) 39, 377
BlsI GCNGC 2 cut(s) 40, 378
Bme18I GGWCC 1 cut(s) 111
BmeT110I CYCGRG 2 cut(s) 5, 76
BmgT120I GGNCC 2 cut(s) 47, 111
BmrI ACTGGG 2 cut(s) 260, 503
BmsI GCATC 2 cut(s) 388, 637
BmuI ACTGGG 2 cut(s) 260, 503
BpiI GAAGAC 1 cut(s) 398
BplI GAGNNNNNCTC 1 cut(s) 36
BpuEI CTTGAG 2 cut(s) 485, 597
BsaJI CCNNGG 1 cut(s) 475
BsaWI WCCGGW 2 cut(s) 62, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 266, 509
BseAI TCCGGA 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 2 cut(s) 130, 379
BseLI CCNNNNNNNGG 1 cut(s) 45
BseNI ACTGG 2 cut(s) 266, 509
BseRI GAGGAG 2 cut(s) 23, 28
BseSI GKGCMC 1 cut(s) 189
BshFI GGCC 1 cut(s) 49
BsiHKCI CYCGRG 2 cut(s) 5, 76
BsiSI CCGG 2 cut(s) 63, 114
BslI CCNNNNNNNGG 1 cut(s) 45
BsnI GGCC 1 cut(s) 49
BsoBI CYCGRG 2 cut(s) 5, 76
Bsp1286I GDGCHC 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 113
Bsp143I GATC 2 cut(s) 151, 303
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 2 cut(s) 39, 377
BspANI GGCC 1 cut(s) 49
BspEI TCCGGA 1 cut(s) 113
BspPI GGATC 1 cut(s) 311
BsrI ACTGG 2 cut(s) 266, 509
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 2 cut(s) 151, 303
BssT1I CCWWGG 1 cut(s) 475
Bst4CI ACNGT 2 cut(s) 121, 518
BstDEI CTNAG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 130, 379
BstKTI GATC 2 cut(s) 154, 306
BstMBI GATC 2 cut(s) 151, 303
BstSLI GKGCMC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 398
BsuRI GGCC 1 cut(s) 49
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 2 cut(s) 130, 379
BtsIMutI CAGTG 2 cut(s) 126, 273
Cfr13I GGNCC 2 cut(s) 47, 111
Csp6I GTAC 1 cut(s) 629
CviAII CATG 2 cut(s) 327, 476
CviJI RGCY 6 cut(s) 49, 141, 376, 463, 547, 611
CviKI_1 RGCY 6 cut(s) 49, 141, 376, 463, 547, 611
CviQI GTAC 1 cut(s) 629
DdeI CTNAG 1 cut(s) 142
DpnI GATC 2 cut(s) 153, 305
DpnII GATC 2 cut(s) 151, 303
DraI TTTAAA 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 111
Eco88I CYCGRG 2 cut(s) 5, 76
EcoT14I CCWWGG 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 475
FaeI CATG 2 cut(s) 330, 479
FatI CATG 2 cut(s) 326, 475
FauNDI CATATG 1 cut(s) 226
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 39, 377
FokI GGATG 2 cut(s) 137, 366
Fsp4HI GCNGC 2 cut(s) 39, 377
FspBI CTAG 1 cut(s) 567
GluI GCNGC 2 cut(s) 39, 377
HaeIII GGCC 1 cut(s) 49
HapII CCGG 2 cut(s) 63, 114
Hin1II CATG 2 cut(s) 330, 479
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 6 cut(s) 19, 57, 128, 209, 261, 484
HpaII CCGG 2 cut(s) 63, 114
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 514
Hpy188III TCNNGA 4 cut(s) 78, 114, 155, 285
Hpy8I GTNNAC 1 cut(s) 514
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 2 cut(s) 82, 86
HpyCH4III ACNGT 2 cut(s) 121, 518
HpyCH4V TGCA 2 cut(s) 181, 402
HpyF3I CTNAG 1 cut(s) 142
Hsp92II CATG 2 cut(s) 330, 479
Kpn2I TCCGGA 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 2 cut(s) 151, 303
LpnPI CCDG 5 cut(s) 76, 127, 279, 324, 522
LweI GCATC 2 cut(s) 388, 637
MaeI CTAG 1 cut(s) 567
MaeIII GTNAC 1 cut(s) 362
MalI GATC 2 cut(s) 153, 305
MboI GATC 2 cut(s) 151, 303
MboII GAAGA 2 cut(s) 182, 403
MfeI CAATTG 1 cut(s) 597
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 6 cut(s) 202, 254, 344, 451, 521, 597
MlyI GAGTC 3 cut(s) 13, 51, 493
MnlI CCTC 5 cut(s) 6, 9, 157, 214, 537
MroI TCCGGA 1 cut(s) 113
MseI TTAA 4 cut(s) 348, 524, 578, 591
MslI CAYNNNNRTG 2 cut(s) 384, 474
MspI CCGG 2 cut(s) 63, 114
MunI CAATTG 1 cut(s) 597
NcoI CCATGG 1 cut(s) 475
NdeI CATATG 1 cut(s) 226
NdeII GATC 2 cut(s) 151, 303
NlaIII CATG 2 cut(s) 330, 479
PaeR7I CTCGAG 1 cut(s) 5
PfeI GAWTC 3 cut(s) 128, 209, 261
PkrI GCNGC 2 cut(s) 40, 378
PleI GAGTC 3 cut(s) 13, 51, 492
PpsI GAGTC 3 cut(s) 13, 51, 492
PspPI GGNCC 2 cut(s) 47, 111
PspXI VCTCGAGB 1 cut(s) 5
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
RseI CAYNNNNRTG 2 cut(s) 384, 474
SaqAI TTAA 4 cut(s) 348, 524, 578, 591
SatI GCNGC 2 cut(s) 39, 377
Sau3AI GATC 2 cut(s) 151, 303
Sau96I GGNCC 2 cut(s) 47, 111
SchI GAGTC 3 cut(s) 13, 51, 493
SduI GDGCHC 1 cut(s) 189
SetI ASST 4 cut(s) 143, 168, 465, 613
SfaNI GCATC 2 cut(s) 388, 637
Sfr274I CTCGAG 1 cut(s) 5
SinI GGWCC 1 cut(s) 111
SlaI CTCGAG 1 cut(s) 5
SmiMI CAYNNNNRTG 2 cut(s) 384, 474
SmlI CTYRAG 3 cut(s) 5, 464, 612
SmoI CTYRAG 3 cut(s) 5, 464, 612
Sse9I AATT 6 cut(s) 202, 254, 344, 451, 521, 597
SsiI CCGC 2 cut(s) 39, 377
SspMI CTAG 1 cut(s) 567
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 2 cut(s) 121, 518
TaqI TCGA 3 cut(s) 6, 55, 334
TasI AATT 6 cut(s) 202, 254, 344, 451, 521, 597
TauI GCSGC 2 cut(s) 41, 379
TfiI GAWTC 3 cut(s) 128, 209, 261
Tru1I TTAA 4 cut(s) 348, 524, 578, 591
Tru9I TTAA 4 cut(s) 348, 524, 578, 591
TscAI CASTG 2 cut(s) 126, 273
TspDTI ATGAA 4 cut(s) 120, 215, 315, 519
TspRI CASTG 2 cut(s) 126, 273
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 2 cut(s) 202, 344
XhoI CTCGAG 1 cut(s) 5
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.