Rmu_sc0023742.1_g000001

Protein FAR1-RELATED SEQUENCE 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023742.1
OG0000252
Physical Location & Seq
Reverse (-)
415 .. 1023
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023742.1_g000001.1.cds

Sequence Viewer

Length: 609 bp
atgaaagaggtggcggcggatctggagtcaagaatgtcgagctttgaattgaaaacacgatgcaactttgaagtgcaactatgtaaagtgtacaccaaggatattttcaagaggttccagttggaggttgagggaatgtactcctgcttcaatacaaggcaggtcaatgtcagtgggcctataataacctacatagttaaagaacgagttgaagttgaaggaaatgagaaggaagtcagatgctatgaggttttgtatgagacaacacaagtggatattcgatgtatctgcagtttgttcaactacaaagggtatctgtgcaggcatgcattaaacgttctgaactacaatggtgtggaagtaatcccgtcccgatacattttgccacggtggtgtaaagatttcaagcgcaggtatcttctgcatcaaggatccagtaatattgatgtgtatgacccagcatactggcgtaatcatctttataatctcgcccttccagttgcggaagaaggggcacaatctgaggaacattataagacgacgttgcaagcattggaggagttattgaacaagtttcatcttgtagaggataccctcaatgtagcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

202

Amino Acids

23.81

Weight (kDa)

6.0

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 483, 534
Acc36I ACCTGC 2 cut(s) 151, 402
AciI CCGC 3 cut(s) 14, 17, 503
AclI AACGTT 1 cut(s) 336
AclWI GGATC 3 cut(s) 27, 426, 439
AfaI GTAC 2 cut(s) 92, 140
AfiI CCNNNNNNNGG 1 cut(s) 124
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AleI CACNNNNGTG 1 cut(s) 391
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 3 cut(s) 27, 426, 439
AoxI GGCC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 517
BamHI GGATCC 1 cut(s) 431
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciVI GTATCC 1 cut(s) 583
BcoDI GTCTC 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 289
BfuAI ACCTGC 2 cut(s) 151, 402
BfuI GTATCC 1 cut(s) 583
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 116, 433
BmsI GCATC 3 cut(s) 50, 230, 433
BpmI CTGGAG 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 96, 386
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 4 cut(s) 118, 435, 470, 497
BseDI CCNNGG 2 cut(s) 96, 386
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 4 cut(s) 118, 435, 470, 497
BseRI GAGGAG 1 cut(s) 572
BseSI GKGCMC 1 cut(s) 517
BseYI CCCAGC 1 cut(s) 457
BsgI GTGCAG 1 cut(s) 340
BshFI GGCC 1 cut(s) 178
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 517
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 2 cut(s) 19, 431
BspACI CCGC 3 cut(s) 14, 17, 503
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 514
BspLI GGNNCC 2 cut(s) 116, 433
BspMAI CTGCAG 1 cut(s) 293
BspMI ACCTGC 2 cut(s) 151, 402
BspPI GGATC 3 cut(s) 27, 426, 439
BsrGI TGTACA 1 cut(s) 90
BsrI ACTGG 4 cut(s) 118, 435, 470, 497
BssECI CCNNGG 2 cut(s) 96, 386
BssMI GATC 2 cut(s) 19, 431
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 90
BstC8I GCNNGC 3 cut(s) 323, 327, 549
BstDEI CTNAG 1 cut(s) 522
BstDSI CCRYGG 1 cut(s) 386
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 2 cut(s) 22, 434
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 2 cut(s) 19, 431
BstNSI RCATGY 1 cut(s) 329
BstSFI CTRYAG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 517
BstX2I RGATCY 2 cut(s) 19, 431
BstXI CCANNNNNNTGG 1 cut(s) 465
BstYI RGATCY 2 cut(s) 19, 431
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 178
BveI ACCTGC 2 cut(s) 151, 402
Cac8I GCNNGC 3 cut(s) 323, 327, 549
CfoI GCGC 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 91, 139
CspCI CAANNNNNGTGG 4 cut(s) 154, 189, 252, 287
CviAII CATG 1 cut(s) 326
CviJI RGCY 2 cut(s) 42, 178
CviKI_1 RGCY 2 cut(s) 42, 178
CviQI GTAC 2 cut(s) 91, 139
DdeI CTNAG 1 cut(s) 522
DpnI GATC 2 cut(s) 21, 433
DpnII GATC 2 cut(s) 19, 431
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 1 cut(s) 329
FaqI GGGAC 1 cut(s) 355
FatI CATG 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
GlaI GCGC 1 cut(s) 410
GluI GCNGC 1 cut(s) 15
GsaI CCCAGC 1 cut(s) 461
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 178
HhaI GCGC 1 cut(s) 411
Hin1II CATG 1 cut(s) 329
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HinfI GANTC 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 91, 93
Hpy188I TCNGA 3 cut(s) 239, 342, 523
Hpy188III TCNNGA 4 cut(s) 23, 30, 109, 372
Hpy8I GTNNAC 2 cut(s) 91, 93
Hpy99I CGWCG 1 cut(s) 544
HpyAV CCTTC 4 cut(s) 212, 223, 503, 503
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4IV ACGT 2 cut(s) 336, 542
HpyCH4V TGCA 7 cut(s) 63, 76, 291, 321, 329, 424, 547
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 2 cut(s) 336, 542
Hsp92II CATG 1 cut(s) 329
HspAI GCGC 1 cut(s) 409
Kzo9I GATC 2 cut(s) 19, 431
LweI GCATC 3 cut(s) 50, 230, 433
MaeII ACGT 2 cut(s) 336, 542
MalI GATC 2 cut(s) 21, 433
MboI GATC 2 cut(s) 19, 431
MboII GAAGA 2 cut(s) 410, 518
MflI RGATCY 2 cut(s) 19, 431
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 1 cut(s) 47
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 8 cut(s) 105, 118, 124, 241, 517, 550, 580, 605
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 2 cut(s) 198, 332
MslI CAYNNNNRTG 1 cut(s) 391
NdeII GATC 2 cut(s) 19, 431
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 2 cut(s) 116, 433
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 1 cut(s) 329
OliI CACNNNNGTG 1 cut(s) 391
PaeI GCATGC 1 cut(s) 329
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PsiI TTATAA 2 cut(s) 483, 534
Psp1406I AACGTT 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 457
PspN4I GGNNCC 2 cut(s) 116, 433
PspPI GGNCC 1 cut(s) 176
PstI CTGCAG 1 cut(s) 293
PsuI RGATCY 2 cut(s) 19, 431
RsaI GTAC 2 cut(s) 92, 140
RsaNI GTAC 2 cut(s) 91, 139
RseI CAYNNNNRTG 1 cut(s) 391
SaqAI TTAA 2 cut(s) 198, 332
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 19, 431
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 517
SfaNI GCATC 3 cut(s) 50, 230, 433
SfcI CTRYAG 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 391
SphI GCATGC 1 cut(s) 329
Sse9I AATT 1 cut(s) 47
SsiI CCGC 3 cut(s) 14, 17, 503
SspI AATATT 1 cut(s) 442
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 390
TaiI ACGT 2 cut(s) 339, 545
TaqI TCGA 2 cut(s) 38, 280
TasI AATT 1 cut(s) 47
TatI WGTACW 2 cut(s) 90, 138
TauI GCSGC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 198, 332
Tru9I TTAA 2 cut(s) 198, 332
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 17, 566
TspRI CASTG 1 cut(s) 178
XceI RCATGY 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.